ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX535453 | A-375
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◣ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

WDR74
EXD1
CHP1
SEMA6A
H4C14
STX16
DPY19L4
H4C15
FAM98B
STX18
MTRNR2L2
MRPL21
IGHMBP2
H4C12
DDIT4
SAR1B
GSTA4
NUF2
IST1
H4C11
AAR2
GBA
NR1H3
ACP2
TUBGCP3
FRA10AC1
C17orf75
SMARCD2
NME1
SLC44A1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
H2AC19
H2AC18
UCHL5
RO60
H2BC18
H3C13
GALK2
COPS2
DMAP1
H4C5
TPRKB
PHLDA1
SF3A3
RAD54L2
FEM1B
RRP15
SLC9A1
RCAN1
GTF3C3
JRK
H1-2
RARS1
H3C3
DSTYK
TBC1D19
RPL37
DCAF10
SNAP47
JMJD4
VWA8
RBBP5
ATR
TATDN3
NSL1
EIF1AD
BANF1
NPAS4
H4C4
S100A16
MRPL16
H1-4
CDKN2AIPNL
RPS7
IFRD2
RPTOR
FLOT1
IER3
EIF2D
USP30
TOP3B
NDUFB7
NOTCH2
SELENOH
RAB5IF
MAN2C1
ACOT7
BCL9
WDR31
CDK5RAP1
DHRS3
KMT2C
TRIB3
ZSCAN30
CUL4A
PCID2
MTRNR2L8
C12orf73
NDUFA12
SPOP
BFSP1
DCP1A
GTF2H2C_2
GTF2H2C
OGT
STAT3
YWHAE
DRG2
SNRPB2
CLUAP1
H2BC21
H2AC20
H2AC21
PDE4DIP
SSBP1
TACO1
SPRY4
SCNM1
LYSMD1
VIRMA
COMMD2
TEFM
RPS6
WDR36
KLHL20
TRIP4
HEXA
TRIAP1
C11orf49
BNIP1
S100A2
METTL9
H3C15
H3C14
LRRC47
E2F6
CT45A10
LAMP1
SLC24A1
PEX3
ADAT2
MTF2
NDUFS3
KBTBD4
YARS1
S100PBP
CSRNP1
JUNB
IRS2
WDR24
HMGB1
ZNF212
USPL1
EEF1A1
VANGL2
LARS2
ST3GAL2
ADPRS
H3C2
TMA16
KANSL3
SPATA24
ZNFX1
MRPL44
INTS12
GSTCD
NEURL2
CTSA
MANBAL
EIF3G
ADPRHL1
STAT6
VPS25
IPO4
MRPS23
FBXW2
AP3B1
GTF2H2
ALKBH2
CCNL1
TMEM101
TMEM256
PSMF1
RTN4
GPRC5A
IFI16
PYDC5
DPY19L3
GSTP1
WWP2
SNX17
EIF2B4
PLEKHM3
NECAP2
ALG10B
MRPL3
RPL32
DNAJC24
DCDC1
DPP9
GUSB
NDUFS7
NOC4L
DDX51
TTPAL
VWA5A
TMEM242
ZNF391
AGMO
TOR1AIP1
SLC3A2
CTSC
DDX1
RTF2
DNAJC25-GNG10
DNAJC25
DMAC1
GGNBP2
TBL3
HTR5A
PAFAH2
ARHGEF12
WDR11
NFXL1
H4C6
NDUFC2-KCTD14
NDUFC2
EFNA1
SSBP2
RTEL1
RBM28
SREK1IP1
CWC27
SIRT4
SNRPB
ATF3
ARIH1
ZC3H6
TRUB2
COQ4
ACBD6
H1-3
DDX23
TVP23B
PMPCA
ENTR1
NCBP3
RCOR3
RPS2
RAB18
CCDC107
E2F4
H3-2
DIAPH1
RINT1
POGZ
INO80C
DRAP1
C11orf68
MNAT1
ANKRD18B
KBTBD6
CCNC
KDM1A
IQSEC3
INTS1
CHD1L
PRKAB2
COX16
KCNMA1
SRFBP1
SH3GL1
AVEN
CPLX2
CCND1
ZBTB45
ALG10
EDC4
MTERF1
ZMPSTE24
FZD1
ZSCAN25
PRKCE
MUS81
SEC16B
AURKAIP1
COG2
TPR
ODR4
RBM45
TRIB1
ZNF827
TTC4
FAM227B
DTWD1
RPS8
SLC25A51
RACK1
RILP
DPH7
INTS5
UFSP1
SERPINA3
CASC3
C10orf88
CCT7
PRADC1
RPL26
RGPD2
RGPD1
UQCC1
KNL1
ANP32E
UCN2
LRRC37A3
PRRG2
NOSIP
CT45A7
CT45A6
CT45A3
SLC33A1
PSMD6
GOSR1
ATXN2
TRPC4AP
OTUD7B
CSNK1D
NOC3L
NOB1
PIP5KL1
HEXIM2
KMT2D
ATP5MF-PTCD1
ATP5MF
CDC73
TTC33
CCDC86
POLDIP3
MRPL38
THAP5
DNAJB9
H4C3
SRA1
WWOX
COQ5
NFATC2
FAM133B
DUS1L
RRN3
RPL28
H1-0
MTAP
GTF2I
SRSF6
TIGD1
EIF4E2
DHX8
CPPED1
ZNF106
ILVBL
ZNF253
GRAP2
ORMDL3
BANP
RUVBL1
SLC35A3
ZC3HC1
CHI3L2
LGI4
MED23
BOD1L1
RFXANK
BORCS8-MEF2B
BORCS8
RPL23A
NCOA3
PPP4R3B
PSMB6
TUT1
ZBTB37
RCC1
NSUN4
MTHFS
WWTR1
MRPL58
RPS27
BICD1
ATF6
SNTB1
SOX10
DUS2
DDX28
ANKRD40
TTI2
BAGE5
BAGE4
BAGE3
BAGE
TAF1C
ZNF554
ZNF830
CCT6B
MRPS14
BRD2
NBPF1
RPL11
NHEJ1
H2AX
RPS14
LSM8
TP53BP2
ZSCAN22
RPL29
RPS3A
ITGB3BP
EFCAB7
SUPT5H
FRG1
LRRC37B
NMNAT1
LZIC
RPL13
SNRPE
USP2
INPP5F
FUS
DDX19B
AARS1
CFAP298-TCP10L
CFAP298
RNF216
REX1BD
PYGB
SPIN2B
CCDC88A
SNX19
LDAH
EXD2
AP4E1
RPL7
RDH10
ADNP
NAA20
TAF13
HOOK2
H2BC8
H2AC8
AK3
GPR176
CFAP20DC
PCOLCE
CALR3
C19orf44
C16orf91
TRA2B
CAAP1
SLC20A1
PARP4
ZNF708
SEC13
RFX3
CHCHD2
SLC26A2
SDHAF3
YJU2
KCTD3
ABHD12
EIF4A2
SART1
ZER1
NBN
ANAPC5
MBTPS2
THOC5
RAF1
HNRNPA1L2
RPL41
TENT4A
COPS7B
NDRG1
PBK
TBL1X
ZCCHC4
C8orf33
MRPL48
AARS2
LRRC59
HNRNPH1
OSBPL11
MRM3
GLOD4
RBM14-RBM4
RBM14
INO80B
FAM189B
TRIM46
KRTCAP2
MKRN1
COQ8B
TFAP2B
SPDYE14
SPDYE10P
POLR3B
NFE2L2
VPS72
RMDN2
DNLZ
LSM5
AVL9
NREP
LYPLAL1
H2BC14
H2AC14
PLEKHG5
MRPL39
WASHC5
NSMCE2
FAM228B
RPL13A
SF3B6
LDHA
RPL7A
MED22
ZNF791
ZNF490
SLC36A1
EPHA3
VPS33A
FANCD2
MTR
POLR2J
ERMARD
PCOTH
MIPEP
CAPS2
STEAP1B
TMEM115
CWC25
SEC61A1
MRPL40
HIRA
RANBP6
VPS45
MARCHF7
LTBR
NDUFAF5
ESF1
ZNF564
LAMTOR5
CSKMT
C11orf98
C16orf72
COIL
ZNF443
DEF8
RFFL
POLR2J3
DNM1L
GTF2IRD2
GTF2IRD2B
UTP3
SMG8
H2BC12
H2AC12
CDC16
MEOX2
ZNF56
REXO4
ARMH3
MCOLN1
LIG4
ABHD13
CRB1
APH1B
TAF5
TOMM20
ZNF45
H3C8
LTBP1
PARP2
ZBTB40
LONP2
ABCC11
PKIG
MBNL2
SURF6
PSMB4
STMP1
TPK1
TTC26
RBM17
PNPO
USP4
DCUN1D5
MAPRE2
CDH19
BOD1
LTA4H
FBXO38
NACA
TUBA1C
LRP6
RPL5
RBM39
STK4
BBS1
KDSR
CALM2
ZNF337
POLG
ELOB
ZNF76
WIZ
CEP120
ATAD2B
CHD1
ZNF205
SH3TC2
UNK
EIF1
MCL1
TAF3
ID1
TARS2
DDX5
CEP95
UBXN1
RPS21
HEMK1
TAGLN2
PRPF6
TIMMDC1
SRSF5
TMEM170A
IPP
ZNF561
IL6R
XKR7
MYPN
IDH3B
DCAF8
DHX9
H4C8
CTNNB1
COMMD1
CCT4
SACM1L
RNF6
GRPEL2
H2BC11
H2AC11
MLEC
PEX2
COA1
GPATCH4
H4C2
SPRED2
PRNP
RBSN
SNRPD1
BUD13
BORCS5
G6PC3
CAPRIN2
PPP2CB
PTPN13
ARGLU1
APP
IFT46
WASHC2C
C12orf57
CBX5
HNRNPA1
KIAA0895
GTPBP3
MAGEA2B
MAGEA2
ACOX3
TRMT44
CCDC90B
DNM2
DYNLL1
GFM2
EIF2B3
SRSF9
ATP5F1E
ERMP1
GFOD2
PDE8A
INTS2
CHML
OPN3
BACE1
FXYD3
MTERF4
THOC3
SLC35E1
CNP
DIDO1
LUC7L3
GID8
DISC1
SLC25A21
MRPS15
SPRED1
DNAJB1
TECR
GNPAT
C1orf131
ALDH9A1
LETMD1
TIMM10
SPIDR
MC1R
BAIAP2
OR2L13
FLRT3
TRAPPC3
BMS1
ARL14EP
THEM4
COMMD4
ARMC8
SRRM1
TMEM167B
ABCA3
SPRY2
PKD2L2
ZNF579
SOD2
WTAP
EFCAB2
NECAP1
GOLGA4
H3C4
KLHL9
ESD
INPPL1
ABCF2-H2BE1
ABCF2
MANF
SH2B1
TRMO
RPL35
ARPC5L
ZBTB17
C18orf25
RPL37A
SLTM
ABHD2
HM13
NAPEPLD
GRHPR
GEM
SNTB2
ARCN1
USP28
DUSP4
UBAP1L
NAGPA
PANK4
PSMD11
TMEM186
PMM2
C2orf42
H2BC4
H2AC6
SLC25A28
MMAA
PIKFYVE
MTRF1
LARP1
ADAM17
ANKRD13D
RGL1
ARPC5
NAA16
ZNF609
DAB2
FAM207A
MTMR2
FNIP1
BLOC1S2
TSSK6
NDUFA13
UTP25
H2BC13
H2AC13
CASP7
TIMP1
TMEM41A
SPRYD4
MRPS18C
HELQ
ABCB10
GNAI2
DCLRE1B
AP4B1
B9D1
H4-16
TSN
CDC25C
FAM53C
LRCH4
FBXO24
MTMR9
FBXL18
CCDC174
SEPSECS
MRPL1
MIDEAS
H2BC17
H2AC17
DPH6
BTG1
FGFBP3
LOXL4
ARF4
TIGD6
HMGXB3
ZC3H11A
ATP6V0D1
POMP
SFPQ
MAPKBP1
CIAO2B
CES2
RPL34
SLC35A4
APBB3
RSL24D1
RPL30
CTHRC1
BOC
MDM4
SLMAP
SLC30A6
STX6
SUPT20H
SLC39A6
ELP2
RGS2
LIFR
CEMIP
HMCN1
KCTD5
MTIF2
EMC4
DELE1
ZNF696
CLASP2
NQO1
MKRN3
MAGEA6
SLC6A15
ZNF506
EMP1
MAPKAPK5
RPL12
LRSAM1
SLC39A13
AP2B1
AMOTL2
ZNF3
EEF1AKMT2
ZFP62
LPCAT3
JAGN1
DPH5
USP3
NR4A1
PIGL
BPTF
SPATC1L
FOXJ3
AHCTF1
HIF1AN
RPL6
SLC38A9
ATXN7L2
MAK16
IMPDH2
NTMT1
AFF4
RNF115
POLR3C
ZNF282
ACBD3
CCDC25
SP1
ZNF846
ACTL6B
APOD
CLTC
ALKBH3
FAM149B1
ECD
ACAD9
DEDD
SRSF7
TMED2
MCAT
KIF15
KIAA1143
MAT2A
FAM3C
GPATCH3
TAF10
PTPN1
COX20
DLAT
PIGV
NR2C1
KDM8
ZBTB38
PEMT
PSMD3
RPL22
RPS28
NDUFA7
WDPCP
MDH1
HSP90AB1
UBL7
RANBP2
POLR3E
ARHGEF7
R3HDM2
FBXO22
MAPK1IP1L
NAA60
AHCYL1
R3HCC1
ANKRD12
STXBP3
PDE7A
SPATA17
GPATCH2
NCOA7
ABHD11
RBM7
C11orf71
NR3C1
CT45A1
PCIF1
ZNF513
TMEM68
TGS1
TMEM60
PHTF2
SMG7
FAM162A
CCDC58
SUPT7L
SLC4A1AP
SUGCT
MPLKIP
ANKRD46
NVL
OMA1
DAB1
MPV17
TCHP
ANKRD18A
AMOTL1
EEF1G
NNMT
METTL25
CCDC59
EIF3C
ERLIN2
RPS23
ATP6AP1L
AQR
MYH7B
GSS
CHSY1
FARSA
FBXW9
NOXA1
SLC39A1
CREB3L4
ISG20
BRK1
C1QTNF1
PTDSS2
TMEM39A
CCDC124
POLR2J2
CPSF1
FBXO4
BCAR3
PLGRKT
TAF1D
C11orf54
TMEM216
MTBP
MRPL13