ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10131663 | Bronchial tracheal epithelial cells
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◣ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

INO80D
ZFX
HNRNPR
TCERG1
HEXIM2
FBXW4
ASXL1
MTA3
KMT5B
SNX16
DDX17
FLOT1
IER3
HNRNPUL1
MTRNR2L8
RNF220
MT2A
EIF4G1
HMGB1
GTF2I
NFYC
ADNP
ZNF280D
EGR1
TRIM52
WDR74
TXNDC15
ZNF532
FAM169A
NAE1
SERPINE1
GTF2IRD2
GTF2IRD2B
NSMAF
ZC3H6
ATF1
SF3B3
COG4
COMMD10
SSRP1
PAIP1
BTF3
PPP2R2A
FBXO4
ACTB
RAD50
HNRNPA3
KDM3B
RPS23
ATP6AP1L
SCAF8
RPL37A
DDIT4
ZNF282
RBM15B
ATXN10
ZMYND11
ERAP1
SREK1
SMAD5
ZC3H11A
TBL1XR1
LEMD2
ZBTB38
SRCAP
LOC730183
EIF2D
NEK9
UBE2L3
BRWD1
DARS1
ZNF507
CCN1
ZNF444
PRCC
RBM26
PUM2
ACVR2B
GABPB2
ZNF22
STRN4
FKRP
MRPL28
YWHAE
R3HDM2
BPTF
ZNF518A
LRRC37A3
NSD1
SDHAF2
CPSF7
ELAC1
C1orf53
EIF5A
MRPL23
PRRC2A
ZNF148
RHBDD3
EWSR1
SELENOT
ZFP62
VPS54
SOCS6
F3
RPL13
PCBP1
DUS1L
NAA38
SEPHS1
CHD3
C4orf36
RANGAP1
ZC3H7B
DEK
EIF4B
TGFBRAP1
ZNF747
RMI1
HNRNPK
TBCA
FAIM
SNRPB
THBS4
MTX3
ASB1
ARPP19
RCOR3
FBXO38
PPIA
TFDP1
POGZ
ANKRD40
ZSCAN12
KDM5C
CSNK1D
COMT
RDH14
ZC3H4
RNF214
PCSK7
RIN3
SLC24A1
ACYP2
URGCP
URGCP-MRPS24
SRRM2
TDRD3
RNF135
EIF4G3
ANXA2
CCDC71
TMEM17
MDM4
ZNF839
GOLM2
RAN
RPS5
MTRNR2L2
NNT
TOP2B
PGGT1B
MARCHF6
GAPDH
ANP32B
SRSF6
ZMYM4
RPS19
MIER3
ZFP64
REV1
PAFAH1B2
PTPN9
TEPSIN
NDUFAF8
CHD1
DUSP16
SOX6
C11orf58
GTF3C6
SMARCE1
DIS3L2
SLC30A5
ZNF746
LPGAT1
NCOA6
TET3
SRSF4
CKS2
HNRNPF
RPS4X
SPIN1
STK24
IDNK
SFXN1
ZNF143
RPS14
RNASEH2B
HDDC2
SENP6
CCDC102A
GSAP
CSNK1E
NFKB1
SETD2
CDC16
PARP8
EIF3A
RAD23B
SUSD1
ACBD6
RAD23A
ZNF76
FOXK2
CLPX
ARL10
RPS7
CTPS1
NLRX1
UNC50
COA5
NAA25
AVEN
LRRK1
DNAJC11
C17orf75
KCTD18
BEND3
STAG1
OCIAD1
NFKBIA
UFC1
CCN2
UQCRH
LRRC41
HNRNPAB
REPIN1
GMEB1
VWA8
ZCCHC3
RBM39
SLC9B2
ARPIN-AP3S2
ARPIN
NFIC
ZNF131
EEF1A1
SEPTIN8
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
PRTFDC1
PTBP1
SDF4
B3GALT6
TASOR
PRRC2B
MYH9
PBX2
JMJD1C
ATP13A1
REEP3
ZNF562
MSL1
ERMARD
KAT6A
ZNF777
AGPAT3
HDGFL3
KMT2D
MATR3
SLTM
C7orf26
ZNF236
XPO7
UIMC1
IMPACT
HMGN2
RCC2
RPTOR
H6PD
CNIH1
GABPA
ATP5PF
SLC7A1
RPL5
ODC1
UBE2E3
BRD7
TRMT2A
RANBP1
TNPO1
BCL7B
SMNDC1
S100A13
CHTOP
NUCKS1
MACROH2A1
NME1
TUBGCP3
NUFIP2
ZFAT
CCNJ
VDAC1
NUAK1
DNAJA4
C5orf51
GPD2
ZC3HAV1L
TLK2
EIF4A1
GBA
GMEB2
UBE2J2
NSMCE4A
CPLANE1
ZNF274
CANX
DCPS
CIPC
RACK1
TM9SF4
UBAP2L
C1orf43
GLUL
ZNF428
RBM33
ZNF346
YBEY
MCM3AP
ARHGDIA
ZNF407
ATIC
DDX50
DYNLL1
HDGF
RPS6
SRSF9
GIGYF2
MCCC2
KRCC1
USP24
BAZ1B
ZKSCAN7
INO80
KANSL1
HINT1
TMEM106B
YARS1
S100PBP
AKAP10
DCAF8
PCIF1
C1QBP
ZFR
GPX7
MPDZ
RPL29
NRF1
FABP6
MAGI2
ZNF787
DIS3L
SYNGR2
PTBP2
SCLY
UPF1
STS
PUDP
SIL1
WDR43
ZNF354B
NAB1
QSER1
HMGCS1
HECTD1
MAML1
PPP3CC
RAC1
LARP1B
AMPD3
ABCB10
KIAA1614
RPS3
H4C12
PCNP
RDX
TENT2
NPEPL1
RCC1L
ECPAS
IDI1
SUMO2
WDR37
ZC3H7A
KBTBD3
AASDHPPT
PHF13
SUCLG2
MRPL48
SMC3
SLC25A46
SFT2D3
KDF1
CHURC1-FNTB
CHURC1
LOC107984974
ATF4
TARDBP
RGPD2
RGPD1
MTMR2
MARCHF7
AIG1
NFYB
EZH2
EIF4H
KDM2A
VPS16
PCED1A
DYRK1A
IRF2
MTMR10
DENND6B
RPL3
MRPS2
C9orf116
NEMP2
RUFY1
C1RL
FKBP8
SRSF1
ELOB
ATP5F1E
PAN3
MCL1
NAPEPLD
TMEM62
KPNB1
RAB11FIP2
FOSL1
HUS1
RPS15
SOCS5
FBXO7
CUL1
SCMH1
ZBTB17
SKIDA1
SUMO3
CNBP
RAD21
AGMAT
KMT2B
NDRG1
RNF169
PHF11
TXNRD3
DCP1B
FAN1
CREBZF
ATXN7L3B
CTCF
TLE5
RPS3A
BCL2L13
EPC2
RPSA
TACO1
RPL19
PHIP
ATP5MF-PTCD1
ATP5MF
RAD54L2
TUBGCP5
PHC3
MAN2A2
CLCN7
SNX19
USP37
CNOT9
MANSC4
KLHL42
FAM160B1
UBE2Q1
HNRNPL
PABPN1
PHF3
MRPL19
UCK2
ERBIN
TMEM268
ZNF764
C5orf24
GATAD1
CYB561
DCTD
FAM160B2
PCBP2
HDAC2
KEAP1
HENMT1
BRD4
B3GNT5
POU6F1
SNRNP35
EIF4E
DDX39B
CERS2
TMEM94
MICOS10-NBL1
MICOS10
OBI1
NDFIP1
REXO4
ILF3
ZNF326
ZNF341
ACSF3
TAF4
ZBTB47
MTERF4
NSFL1C
BMS1
PPP4R3A
LTV1
ZFP2
SIPA1L1
SMIM10L1
PRH1-TAS2R14
PRH1
RPL21
C19orf12
ZNF398
EIF3B
SREK1IP1
CWC27
SMAD4
BRIX1
IQCG
MFSD14A
RPL35A
TPT1
USP40
BOD1
G3BP1
SKP1
RC3H2
TRIM44
IMMP2L
IAH1
ZNF358
MORF4L1
RNF6
REV3L
ZKSCAN2
CCT7
PRADC1
H2BC15
H2AC15
DHX15
PHC2
RPL32
WDR82
MAP3K20
GABPB1
NACA
CRADD
PRDM2
ITSN2
NIPSNAP2
C9orf64
ITGB1
MPPE1
TLK1
TMCC1
CASD1
RPL12
LRSAM1
U2AF1L5
U2AF1
MCMBP
SLC20A1
ATN1
SLC22A5
UBC
VPS4A
MAP2K2
FAXC
VAPA
JPT2
TBC1D5
MSRB2
OBSL1
INHA
KPNA1
ZNF768
P3H4
FKBP10
SAR1B
GADD45B
PCBD2
DCAF10
COX7C
RPL37
ATE1
RPL9
LIAS
PIP4K2B
PEX7
NCKAP1
HSPA9
ING5
ZNF70
DPY19L4
PPAN-P2RY11
PPAN
DAZAP1
MTHFD2L
DRAP1
C11orf68
DDX6
PPP6R2
MRPL21
IGHMBP2
PFKM
SENP1
RPL35
ARPC5L
POLR2M
KMT2A
DPYSL2
MRPL39
FAM228B
SNRPD1
STOML2
MAN2C1
RPP38
RITA1
DDX54
HSPA8
PFN4
KLHL9
ARRDC3
BFSP1
TAPT1
CLIP4
CTSZ
SRSF11
ZNF770
MAN1A2
PIM3
EEF1AKMT1
SGCE
PEG10
ZNF384
DEDD
TTC17
DHRS12
BRAF
MACROH2A2
MTA1
TMBIM4
RFX8
KCMF1
RPS15A
RPL17-C18orf32
RPL17
CCDC200
ETAA1
PRKAA1
ZNF619
SNX17
EIF2B4
JAGN1
TTC3
PIGP
GFER
RCN1
SETD7
TBRG4
SNX5
MGME1
RPL11
XBP1
INTS2
BEX3
ZNF518B
ZZEF1
CYB5D2
ANXA4
DENND4B
CENPV
SDC4
USP30
RFX3
GTPBP4
NFKBIZ
TEX22
FBXL17
BACH1
HOXB7
GDI2
EXOSC6
TUT4
FBXL5
D2HGDH
VAMP2
EEF2
MYH7B
GSS
CPSF6
SURF4
CTSO
KATNAL2
PIAS2
PPRC1
FBXO28
RNPS1
SSBP2
CCNG1
EPM2A
ZNF496
FBXW11
TTI1
RPRD1B
OMA1
DAB1
SORBS3
UCK1
LIG3
PICK1
HHIPL1
BCL2
EGFR
COMMD1
CCT4
SNRNP70
PLEKHM3
PLEKHA1
USP47
COX16
VPS36
ZNF629
SUMF1
RPL38
DYNC2I2
HNRNPU
RBM12
CPNE1
TUSC1
TK2
NELFCD
TAF15
RPL27A
DHX30
PPP6R3
AFG3L2
CLK1
COIL
SMAD1
IRF2BP2
THUMPD3
MMAA
SP3
SQSTM1
EP300
ARSB
ABTB1
RYK
MGAT4B
DRAM1
FJX1
MMP14
KRT17
TMEM11
B4GALT7
CCDC97
HNRNPD
PET117
KAT14
WDFY3
DERA
EBAG9
EMB
ARHGEF7
GEMIN7
NBPF15
ZNF621
CSNK1G3
CHMP6
CBX8
PGAP4
ANKRD65
DDX1
LZTR1
LDAH
NSRP1
MMADHC
LACC1
CCDC122
COQ9
CIAPIN1
USP21
FAM98B
CAPZA2
DDX19B
AARS1
ZNF785
GGACT
PHF19
ECHDC2
UNC119B
EPHA2
GIGYF1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
RAB1B
UQCRFS1
IQANK1
FAM83H
SECISBP2
RPS8
ELP5
CTDNEP1
PDXDC1
MKLN1
PPIP5K2
TUBA1B
SMARCA4
UHMK1
XPC
LSM3
DMTF1
PSMD14
NUDT4B
NUDT4
AGO4
GSTA4
TIAL1
ADO
SETD5
SPOP
MTMR1
ZGPAT
ARFRP1
MTRR
FASTKD3
CKAP5
SF1
NHLRC2
DCLRE1A
AGK
ZFP91
LPXN
SMARCC1
HIF1A
DENND2D
DNMT3A
ZNF862
ZNF302
SLC35A3
PRKAR1B
CIZ1
ANP32E
IREB2
TCTN1
NINJ2
DOCK7
RNF44
ALKBH3
POLR3E
MAP2K1
ZNF717
PFDN4
TMEM42
NFAT5
YEATS2
SLC35D1
PRDM5
WSB2
ARIH2
ZFP36L2
RBL1
TRIP12
FBXO36
LRRC47
CLN5
RBM27
E2F4
PRRC2C
SMC1A
RIBC1
PRELID3B
USB1
ZNF319
LSM14A
GCFC2
KLHDC1
SNX9
AGO2
SLC12A8
CDC42EP1
GTF3C3
GADD45GIP1
AKT2
GALC
STX17
BRPF3
TCF12
SPG11
CELF1
ATP6V0A2
PTPMT1
DCUN1D1
SPRED1
ZNF623
FKBP5
TCF20
CXCL1
MICU2
PPIL1
ZNF830
CCT6B
ACBD3
SCRN1
ZFP1
CDC7
TANGO6
GOLPH3
DENND1B
TMEM185B
CDV3
TBKBP1
CTBP2
IFNGR2
FRA10AC1
YTHDF2
ZBTB8OS
RBBP4
ZBTB7A
PRMT3
NAA60
TMEM168
ENO1
ZNF652
C9orf40
CRPPA
USP25
HMGCL
ATXN2
RNF138
GPATCH4
PPP4R2
SRC
RPL22
MRPL3
RPL10A
RUSF1
PABPC4
CSNK1A1
UBE2I
PATL1
PKD1
GPR150
H4C11
SRSF2
MFSD11
MANBAL
BNIP1
YRDC
C1orf122
ZSCAN26
ZYX
FAM131B
PBLD
HNRNPH3
SMPD4
MZT2B
SYPL1
RPL7A
MED22
DUT
ANGEL1
DHX36
AP3D1
DNPH1
PFKL
CLTC
WAPL
RWDD1
ANGEL2
DUSP1
HMBOX1
INTS9
CDKN2AIPNL
USE1
SIRT4
TMA16
FNBP4