ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX327759 | MM.1S
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◣ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

IFRD2
TMEM115
PHB
SMPD3
CALR3
C19orf44
TCEA2
CLPB
TMTC3
CEP290
PPRC1
ST3GAL2
PAFAH2
INVS
ERP44
BOD1
MMACHC
PNKD
AAMP
AHCYL2
SCNM1
LYSMD1
CRTC2
LARS1
ORMDL3
CCP110
STAU1
PANK4
AP2S1
TSNAXIP1
RANBP10
CHMP4B
GSPT1
PPP1R12B
KBTBD7
NUDCD1
CDCA3
GFUS
C16orf91
SYMPK
FOXA3
PPP1R12C
ZNF189
MRPL50
NTAN1
DDX23
MRPL24
SCRIB
ZFYVE28
CFAP99
ZNF225
TNFAIP1
IFT20
TTC13
ARV1
CLEC16A
KBTBD6
UBQLN4
LAMTOR2
SNX17
EIF2B4
TSSC4
FASTKD1
MED15
C1orf159
PEMT
CTU1
BTRC
NUDT13
ZNF749
BOLA1
CNIH4
MICOS13
HSD11B1L
UBAC1
SLC35B4
GATB
MAD2L1BP
GTPBP2
PHF12
TFEB
VCPIP1
C8orf44-SGK3
ING4
TSC2
NTHL1
ATP5F1D
UNK
FEM1A
SCAF1
SIRT2
NFKBIB
WDR87
SIPA1L3
TIMM21
FBXO15
TMEM127
CIAO1
TMEM59
TCEANC2
RPIA
TMEM11
ZNF444
CCDC146
JOSD2
WNK1
ZNF56
NDUFS2
OSCAR
NDUFA3
TTC33
BANP
C19orf53
ZNF169
SLC4A2
CDK5
AP2M1
DYNC1I2
RPL8
NPRL2
CYB561D2
COX7C
NOP14
GRK4
PHF13
ZFYVE19
DNAJC17
TRAK2
STRADB
SNX27
ZFYVE1
TBL3
TRAPPC3
ABCF2-H2BE1
ABCF2
SMARCAL1
RIC8B
BUB3
SMUG1
CTF1
LRRC29
PRCC
ZSCAN22
NFXL1
ELOC
DSTYK
DFFA
STK25
TFPT
PRPF31
ING3
LETM1
HTRA2
WDPCP
MDH1
CCDC174
THRAP3
GTF2H4
FBXW11
VPS50
HEPACAM2
USP48
TMEM101
TMEM102
ZNF384
ZNF235
ZNF337
GPANK1
CSNK2B
GPKOW
CAPN15
SOX6
C11orf58
ZNF350
CTDP1
UFSP2
ZNF420
ATP5PO
CLP1
DESI2
CCDC150
AURKAIP1
RABAC1
ZNF37A
BUB1B
RPS7
LMNB2
CCDC90B
CNOT1
UBR2
PSMD11
WRNIP1
SDCCAG8
CEP170
ZNF747
SERPINI1
PDCD10
SSBP1
RPGRIP1L
FTO
DCAKD
NMT1
RAB1A
ZNF224
PEX26
NUP153
RBM6
CHCHD3
INTS1
ACTR1A
SUFU
RPS20
TRAF7
ZC3H11A
RPS6KB2
ZNF230
TIMM13
DDX49
COPE
B3GALNT2
ZNF133
SEC61A1
MED27
COPS7B
PDE6D
ARHGAP9
MARS1
TMEM43
CHCHD4
CDK5RAP2
AKIRIN2
PRR14
ZNF554
TTC1
SLMAP
THYN1
ACAD8
KMT2B
HMBOX1
INTS9
PNPLA6
FBXO46
UCHL5
RO60
TOR1AIP1
PTDSS2
GPR108
IPPK
POLR2E
PSMB4
ZNF484
NCDN
KIAA0319L
RALBP1
CLDND1
KAT7
EXOSC4
PSMD4
CNOT4
ZNF2
CWC22
ZNF32
PRRG2
NOSIP
FBXL19
MGRN1
ZNF419
NCLN
UBL7
ZGPAT
ARFRP1
RALGAPA2
SCAMP4
ADAT3
PANK3
FAM193A
MXI1
EIF5B
TXNDC9
FBXO48
APLF
ZNF354A
CIAO2A
ZCCHC4
ZNF547
TRAPPC2B
VIPAS39
AHSA1
SPHK2
RPL18
STK17A
LEMD2
PA2G4
MED11
WAPL
BICD2
SEC11C
RPS27
RANGAP1
PHF23
ZNF227
TMEM160
FDPS
ZNF527
ZCCHC8
ENOX2
RAB5C
PHB2
LUC7L
MAF1
ZNF17
RPS3
VPS4B
UTP11
TBX6
EXOC4
FAM185A
TMEM69
GPBP1L1
VAPA
RAB29
ZW10
CRK
COMMD9
MAX
SLC25A19
THOC6
HCFC1R1
MRPL20
NARS1
ZNF226
ZNF805
INO80B
RPL18A
PTBP1
GUSB
CDK8
LTA4H
SCYL3
WDR46
PFDN6
ZNF862
LIN37
PSMD2
C1orf109
CDC25C
FAM53C
DGAT1
RACGAP1
ASXL1
PCM1
AQR
DDX47
RAB30
PGBD4
EMC7
METTL26
GINS3
ZNF343
RPL23A
NFKBIL1
METTL3
ATP6V1G2
ZNF773
CIAO3
IGSF8
GPR137
NDUFB5
MRPL47
SNRPE
CXXC1
WBP2
SSR2
OPA1
PIGU
BIRC5
PSMC4
GID4
ATPAF2
CFL1
KATNB1
CAND1
TMEM186
PMM2
CNOT6
USP31
TMEM94
COPS8
MITF
ZMAT5
UQCR10
DPH2
TRUB1
ZNF277
DOCK4
SSR3
MORF4L1
PSMB6
ABRAXAS2
RPS26
DUS3L
SEPTIN9
WIZ
RBL1
AHCTF1
BDP1
EIF2S2
L3MBTL2
WDR53
FBXO45
CCAR2
PES1
FAM228B
SF3B6
PPP1R13L
POLR1G
USP35
KCTD21
RPL34
TOR2A
CLPP
DPM3
CDK9
TERF2
RNASEH2C
ZNF451
RPS13
TPGS1
THAP1
VRK1
HSPA13
ZNF586
ZSCAN5A
ZNF436
TMEM245
DOHH
ZNF584
ZNF628
RAB7A
MRPL11
CAPN10
ZNF500
OAZ3
EIF1B
TRABD
SUCLG1
B4GALT7
GEMIN6
FBXL18
CWC25
MED23
ABCC5
RWDD1
DPP9
RETSAT
ELMOD3
HSP90B1
NOP53
TMEM143
SYNGR4
RAD51AP2
FCSK
ZNF776
NUP205
RPL12
LRSAM1
RTEL1
SYPL1
NOLC1
NUF2
ZNF585A
ZNF25
DCP1A
PRKCI
TRMT1L
SWT1
ALKBH8
SESN1
CEP57L1
ZBTB7A
SHLD1
ZNF764
SNAPIN
RPP40
QTRT2
CCDC191
BABAM1
KHDC4
PRKCSH
CCDC151
CFAP410
CSRNP2
TMEM199
POLDIP2
POLRMT
TOMM22
GFM1
UBE2Q1
PPP6C
BOD1L1
SUGP1
MAU2
KPTN
CCDC124
TOR1A
CARS1
TRMT2A
RANBP1
ZNF599
AKT1S1
TBC1D17
GGPS1
ARID4B
SCAMP3
ZNF548
SH2D6
TMEM33
ACLY
CNPY2
LSG1
RBBP5
IPO8
ZNF317
RBL2
FAM222A
KCTD5
ZNF567
C12orf43
RPL37
ELP6
RAB3C
ZNF221
UBE2V1
DCAF1
MRPL54
APBA3
SF3A3
XPOT
DNAJC28
ZNF140
TSN
SEL1L
KBTBD8
ZSWIM9
LIG1
ZNF416
SLX1B
SLX1A
BOLA2B
BOLA2
HIRIP3
SLC33A1
ATP5MF-PTCD1
ATP5MF
SKIV2L
NELFE
UBA52
TMEM230
INTS4
TMED9
ADSS2
WASF1
CDC40
TUT1
COG2
SMIM13
NME1
BET1
ZNF446
SMN2
SMN1
ZBTB45
BOLA2-SMG1P6
ILF3
STRN
CMPK1
SERP1
EIF2A
FBXO38
TMEM109
GALM
ARMH3
ZNF180
FAM168A
VEZT
FGD6
FAM149B1
ECD
IPO7
YIPF2
TIMM29
NUTF2
CENPT
SLC38A9
GSK3A
CHCHD6
SUPT4H1
MACC1
MEN1
GALK2
COPS2
CCDC117
PPP2R5B
ZDHHC16
EXOSC1
EIF3C
EIF3CL
NCBP2AS2
NCBP2
ZNF550
REXO1
TSACC
CCT3
OSBPL11
NKIRAS1
RPL15
ZNF268
SETMAR
NDUFS7
SETDB1
DNAJC11
THAP4
ATG4B
SASS6
ZNF45
NUMA1
LRTOMT
APH1A
SNRPB2
PRAF2
PRPF6
YJU2
BRIX1
CCDC77
SDF4
B3GALT6
PRPF4
CDC26
CACTIN
C15orf40
EIF3F
DAZAP1
CLINT1
ATP13A1
TXNL4B
DHX38
SKP2
LMBRD2
RPS3A
UBA1
NR6A1
RAB8B
COPS7A
JRK
DARS2
CENPL
LRRC47
TIMM22
DNM1L
EIF3D
GPT2
IFRD1
MVB12A
ZNF304
NAA38
TM9SF4
CYB5D1
WDTC1
MTR
DEDD
ESCO2
SHPK
CTNS
NMNAT1
LZIC
SH2B1
TUFM
SF3B2
POLR2J3
SART1
DHX8
KNSTRN
PNISR
AKAP8
VKORC1
ZC3H10
WDR18
ADO
YY1AP1
DAP3
MRPS25
NOP16
HIGD2A
PEX12
AP2B1
POMZP3
MTERF4
TOGARAM1
KLHL28
ZNF614
RBM41
PSMD10
ATG4A
ZNF211
ZNF721
PIGG
MRPS15
STX10
IER2
DHX33
SLC39A13
GFM2
RPS19
PRPSAP1
PSMD3
SUPT5H
ZNF417
MAMSTR
GPS2
UBE4A
TSNARE1
MRPS16
TMEM147
TSPAN4
POLR2L
IPO13
LRPAP1
TSNAX
PCNX3
MAP3K11
RNASEH2A
NR1H3
ACP2
UFD1
CDC45
DPM2
PGAM1
ARHGEF1
HEXIM2
CEP350
N4BP2L2
DDX25
PUS3
ZNF155
ZSCAN32
ZNF174
SAP30
CCNL1
PSMA2
ZNF324B
PPP1R11
METTL18
C1orf112
ALG10B
ALG10
UBXN6
HSPH1
PPIP5K2
UCK1
CDCA8
WASHC3
TRUB2
COQ4
TTLL11
MIA3
ZNF79
SNIP1
UBE2J2
STX16
PSMC5
FTSJ3
NEDD8-MDP1
NEDD8
GMPR2
COA3
CNTD1
NAPB
SERBP1
PARK7
SSNA1
ANAPC2
RPP30
ITPR1
HSCB
CHEK2
CACYBP
NUP214
ANGEL2
CDC34
MRPL19
PURB
UBE2N
CUEDC2
ZNF165
ZNF181
SLC37A3
SPC25
SLC25A44
PSMC3
CTNNBL1
MEA1
ZNF684
DNAJC14
MRPL21
IGHMBP2
TMEM222
ARPP19
PTRHD1
CENPO
RPL27
TIPRL
CD2BP2
ZRANB3
R3HDM1
ATE1
DHX30
PCBP2
MARCHF5
CPEB3
MINDY1
PRUNE1
RPL29
SMG5
ACP6
KLHL20
JTB
IQCH
AAGAB
MTMR9
TMEM129
TACC3
ADPRS
MON2
NELFB
TTC31
CCDC142
ZNF286A
METTL25
CCDC59
TARDBP
C18orf25
PPP1R7
PASK
ZNF460
EXO1
HDGF
USP15
PSMF1
TTC30A
FIS1
FAM32A
C8orf76
TRMT10A
MTTP
SLC30A6
SEC13
DMAC1
TMEM41A
ZNF302
IQGAP3
KLHL24
ZNF565
ZNF146
MYBL1
ATG4C
TMEM258
FEN1
YWHAG
EDEM3
CCNC
ZC3HC1
OTUD4
EMSY
GAPVD1
HBP1
RHOT2
LRRC8A
KYAT1
WRAP73
SSU72
MRPS22
FARSA
TMEM150A
NFATC3
NDUFS3
KBTBD4
BLOC1S5
VPS45
BIVM
POGLUT2
SHOC2
BBIP1
RCAN1
DYNC2LI1
ZNF571
ZNF540
C7orf25
REXO2
TAF8
CSNK2A1
TOE1
MUTYH
TPRKB
WDR70
RAD52
LSM10
WASHC4
KDM4D
CWC15
PUM3
FBXO9
IDH3B
MAP3K13
CIZ1
DNM1
GMPPA
TPR
ODR4
FAM193B
FAM207A
ELOB
CNOT2
RPLP2
MPI
CC2D1A
C19orf57
TTC30B
ADPGK
ATR
ERI3
TMED10
NDUFV1
METTL17
DENND1A
SELENOH
ZNF688
EIF2B5
RBM22
SFXN5
AP5S1
RPL22
MRPL12
SPECC1
NDUFB10
ABT1
TMEM214
ETFDH
C4orf46
POLR1B
ZNF570
ZNF569
TRIP4
SNAP47
JMJD4
WDR24
POLR3F
DZANK1
RPS28
NDUFA7
RDH14
ZNF134
C16orf86
M6PR
KLRG1
BRD3
FOXJ3
SNAPC3
ZNFX1
AHCY
LONP1
CATSPERD
TUBGCP3
ZNF513
ZNF26
GDAP1
RPP14
HTD2
RRP15
XAB2
NUP107
SLC39A3
EIF3B
LRWD1
ALKBH4
EEF1D
TIGD5
DCTN2
LTN1
ABLIM2
MBD1
TIMM10B
CHCHD5
EIF2D
ALKBH3
SLC35E2A
TSSK6
NDUFA13
CANT1
LCORL
KAT8