ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX535454 | A-375
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◣ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

WDR74
GSTA4
FRA10AC1
STX16
MTRNR2L2
SEMA6A
FAM98B
MTRNR2L8
DRG2
DCAF10
TATDN3
NSL1
SMARCD2
GBA
EXD1
CHP1
C17orf75
FAM227B
DTWD1
H4C14
FLOT1
IER3
STX18
TPT1
CDK5RAP1
WDR36
IST1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
SLC5A3
MRPS6
RGPD2
RGPD1
MAN2C1
RAD54L2
TACO1
NUF2
CUL4A
PCID2
BNIP1
DCP1A
ANKRD40
DPY19L4
TRIP4
ZC3HC1
MTF2
DSTYK
NME1
LRRC37A3
INTS12
GSTCD
INPP5F
TMEM242
WDR31
H2BC21
H2AC20
H2AC21
COMMD2
AURKAIP1
H4C15
RBBP5
SAR1B
SLC24A1
TMEM256
TPRKB
STAT6
H4C11
EIF2D
ANP32E
NKIRAS1
RPL15
TTC4
SLC9A1
SF3A3
SLC25A51
LRATD2
CTNNB1
PLEKHM3
NFE2L2
TEFM
NDUFS3
KBTBD4
H4C12
KDM1A
NDUFC2-KCTD14
NDUFC2
PSMD1
PDE4DIP
ERCC1
H4C3
NDUFS7
GTF2H2
RPS27
MTBP
MRPL13
ACOT7
KANK1
ATXN7L2
ACBD6
CCDC107
SPRY4
SLC20A1
PEX3
ADAT2
H2BC18
H3C13
TTC26
PHLDA1
TOMM5
LAMP1
ZMPSTE24
SERPINE2
S100A6
HMGB1
USPL1
DMAP1
HEXIM2
MRPL40
HIRA
VPS45
ASB6
NMNAT1
LZIC
SMG8
DDIT4
PIGC
ZNF827
RBM28
WWOX
PIGL
AMOTL1
POLR3B
TARS2
XPA
TOR1AIP1
RPS6
WDR70
RPL37
ID1
TUBGCP3
NR1H3
ACP2
SIRT4
ANAPC5
NPM1
CCNL1
JUNB
ZBTB45
RPL3
JRK
BTF3
RRP15
ALKBH3
RPL28
ZER1
USP30
MRPL39
CBX5
HNRNPA1
VPS25
DTX2
E2F6
OPA1
FBXW11
ZNF609
FAM228B
SF3B6
SNRPE
DNAJC25-GNG10
DNAJC25
CT45A10
KCTD5
COX16
LDAH
H2BC11
H2AC11
TFAP2B
RPL9
LIAS
SELENOH
LIG4
ABHD13
AARSD1
SNTB1
EEF1A1
SLC35A3
NUFIP2
PDE8A
SSBP2
SAAL1
GFOD2
SPATA24
SOD2
WTAP
RCOR3
EIF3G
RFXANK
BORCS8-MEF2B
BORCS8
POLR2C
ARL14EP
BTG1
FXYD3
NOTCH2
ZNFX1
DR1
FEM1B
PRKCE
ZNF460
G3BP1
ITGB3BP
EFCAB7
SS18
MTERF4
MRPS23
MBTPS2
RPS27A
CLHC1
SLC6A15
RPS3
MTOR
S100A2
RPS20
NSUN4
PTCD1
CPSF4
OTUD7B
NR4A1
ACY1
CLTC
RICTOR
SOX5
SSBP1
SNRPB2
RPS9
ABHD12
RPL11
NNMT
MRPL21
IGHMBP2
SNRNP70
COQ8A
BFSP1
TUBB3
ERCC6L2
PPP6R1
MTMR2
ZSCAN30
SLC44A1
CGGBP1
ATP5MC2
C3orf38
ACBD3
GTF3C6
KCTD3
MRPL1
H1-3
NCSTN
COPA
AGMO
SAGE1
MRPL24
CDKN2AIPNL
RBM45
H3-2
C12orf57
R3HDM2
LOXL4
UCHL5
RO60
MTAP
H2BC13
H2AC13
PYROXD2
BCL9
BOD1L1
POLDIP3
DNAJC14
SECISBP2L
H2AC19
H2AC18
H3C15
H3C14
NDUFA9
AKAP3
STAT3
MOSMO
ZNF76
STARD13
SERPINA3
PGBD2
PTPRG
SEC13
KIF22
UCN2
MIS12
DERL2
TOMM20
KCNMA1
WDR11
ALG1
POLR3F
DZANK1
WWTR1
MRPL53
MRPL48
QSOX1
H1-4
RPL32
DDX23
IFRD2
ZC3H6
FEM1A
TBL3
COPS7B
CALR3
C19orf44
CDCA3
TMEM41A
TIMM21
FBXO15
NCBP2AS2
NCBP2
ABCF2-H2BE1
ABCF2
BRWD1
ATAD2
TSNAXIP1
RANBP10
KMT5B
PPP5D1
CALM3
PPRC1
UBC
UNK
GSPT1
PAFAH2
TMEM11
POLR2J3
WDR53
FBXO45
TMEM199
POLDIP2
TMEM222
SPATC1L
GATB
FOXJ3
CLPB
RBL1
CALM1
SSNA1
ANAPC2
SPNS1
TOMM22
CCDC88A
TSN
MRM3
GLOD4
CYCS
ZSCAN22
MRTO4
EMC1
LRP6
ORMDL3
TCF3
CALM2
RPL8
COPS8
KBTBD7
TIMM22
UBB
NUP214
CCDC77
BTRC
SMN2
SMN1
CNOT1
PEMT
TMEM115
DOHH
C16orf91
KMT2D
CFAP410
ZNF337
POMZP3
MED23
SCAF1
SYMPK
CHMP4B
ST3GAL2
CTDP1
KPNB1
BOD1
AP2S1
WASHC2C
PSMD3
PRCC
FOXA3
TSSC4
AHCYL2
PNKD
CDKL3
SNX17
EIF2B4
AAMP
ING3
PA2G4
ADPGK
TCEA2
HTRA2
CKS2
GTF2H3
EIF2B1
HEXA
ZNF212
WASHC2A
SMPD3
PEX26
CLEC16A
NAGPA
THRAP3
KCTD9
CDCA2
PHIP
KBTBD6
RPL22
ZFAND2A
NUDCD1
TSC1
GFI1B
UBE2B
TTC13
ARV1
TRIAP1
PPP1R12B
ZNF721
PIGG
KDM5A
MED15
UBE2D3
MCM7
AP4M1
ZCCHC4
RPS6KB2
NXF1
RPS28
NDUFA7
ATG14
OSCAR
NDUFA3
ATP5MF-PTCD1
ATP5MF
ZKSCAN2
RPL18A
PKM
CRTC2
INVS
ERP44
IPO11
TMEM127
CIAO1
FAM207A
MICOS13
HSD11B1L
MAF1
OAZ3
SCNM1
LYSMD1
TOB2
MAD2L1BP
C8orf33
RPIA
PANK4
SCRIB
ZNF444
GTPBP2
NPRL2
CYB561D2
NOP14
GRK4
CDC25C
GPAM
PPP1R12C
DNAJC11
RPS26
WDPCP
MDH1
DUS2
DDX28
MAIP1
DIP2A
TMTC3
CEP290
TRAPPC3
ZW10
CYP51A1
TNFAIP1
IFT20
PHB
EIF4A2
SLC35B4
FAM53C
RANGAP1
ATXN2L
MAPKAPK5
BRIX1
UBR2
C1orf159
MXD4
SRSF11
SMG5
RBM42
CCAR2
LRRC29
ZNF384
NUP153
ZNF56
FUS
UBQLN1
TBRG4
PGBD4
EMC7
MRPS15
KAT7
RLF
PINX1
MFN2
HMBOX1
C19orf53
PSMD11
COMMD1
MRPS35
DNAJA3
UBE2Q1
PSMF1
SLC25A19
DCAKD
ADNP
UBQLN4
LAMTOR2
HMGCL
CCT4
KDM4B
GHITM
BANP
TAF5
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
ZFYVE1
NSFL1C
GID4
ATPAF2
CCDC146
SPRYD4
PBLD
HNRNPH3
TRIP12
FBXO36
LRRC40
STK25
INTS9
DPP9
MMACHC
RIC8B
LUC7L
AP2M1
VPS37A
CNOT7
NOC4L
DDX51
NMT1
TTC33
DOLPP1
ENDOV
CIC
SPTLC1
SP2
MRPL20
SLC33A1
ZNF420
ZGPAT
ARFRP1
PIGU
ZFYVE19
DNAJC17
AHCTF1
ACOX3
NTAN1
COMMD9
TEPSIN
NDUFAF8
CSRNP2
HNRNPAB
ARHGEF12
RCL1
IDH3B
TCF12
RBM6
BIRC5
DNAJB12
MRPL58
LETM1
RPL29
STAU1
ABRAXAS2
EIF3F
SECISBP2
LONP1
CATSPERD
TFPT
PRPF31
RALBP1
TRMT44
SUPV3L1
SMARCAL1
ARF4
HSP90AB1
GFUS
SNAPC3
COQ9
CIAPIN1
SART1
ZFPL1
CDCA5
UBL7
DDX49
COPE
GTF2I
PHF13
GTF3C5
FDPS
JOSD2
RPL12
LRSAM1
PIK3R3
HSP90B1
GTF2H4
MRPS16
COG2
RCOR1
ZNF749
ARHGAP9
ELOC
RAB5C
H2AX
DDX1
CTU1
TSC2
NTHL1
WASHC5
NSMCE2
DCAF8
ZC3H10
BOLA1
DCAF1
DESI2
TRAF7
PARL
WAPL
MARS1
TMEM59
TCEANC2
NDUFV1
CAND1
GABPB1
IP6K2
CBWD5
U2AF1L5
U2AF1
TRAK2
STRADB
CHCHD3
RWDD1
CRBN
PHF12
SOX6
C11orf58
RPS7
B3GALNT2
TOP3B
CBWD3
METTL25
CCDC59
VCPIP1
C8orf44-SGK3
COX7C
PNRC1
SLC7A6OS
PRMT7
PSMD2
MCU
CANT1
WDR87
SIPA1L3
TRMT61B
KLLN
THYN1
ACAD8
SLC3A2
ADPRS
PABPC1
PRKACA
BICD2
USP48
GUSB
SMIM13
SKIV2L
NELFE
SIRT2
NFKBIB
METTL9
POLG
SSR3
ZNF500
TARBP2
BRF2
IPPK
FAM149B1
ECD
ZNF148
PSMD4
TIMM13
NDUFB5
MRPL47
THOC6
HCFC1R1
CCDC90B
RPS16
RPS19
MANF
UBE3B
KCTD10
NOLC1
GFM1
COQ7
TRUB1
ATF4
PTEN
RUVBL1
TMEM217
TBC1D22B
SERBP1
SESN1
RPLP1
CMTR1
VIRMA
UBA52
ASXL1
DNM1L
COA6
POLR2E
NLK
ZC3H3
PCBP2
EIF4A1
CFAP20
HAGH
FAHD1
COPS7A
RPLP0
NDUFAB1
LARS1
CAPN10
TFRC
HPS4
NEURL2
CTSA
CACTIN
BUB3
KAT8
SPRED1
WBP2
ATRIP
BUB1B
ACTR1A
PARK7
CLP1
TMEM230
SF3B2
XRRA1
SPCS2
REXO1
SRP68
FAF1
PTDSS2
CBWD6
KMT2B
SLC4A2
SLX1B
SLX1A
BOLA2B
BOLA2
WDR25
WARS1
RNASEH2C
PALB2
DCTN5
CWC25
ZNF518A
VCP
PHB2
MRPS11
MRPL46
RANBP2
ZNF225
TIGD6
HMGXB3
USP15
WRNIP1
DFFA
BMS1
XPOT
RPP30
ZFAT
SUMF1
FBXO46
C5orf51
HIF1AN
NOL10
CFL1
CCP110
CHCHD6
ZFYVE28
SNRPD3
GUCD1
SEC11C
ZNF189
MRPL50
UBN1
GLYR1
CEP350
CCDC150
EIF2S2
POLR3D
MDM4
GTF2H2C
GTF2H2C_2
B4GALT7
PHAX
RPL23A
SPHK2
FBXO28
RAD23A
CDK8
C12orf43
CFAP99
WDR4
CDK5
PTBP1
FAM156A
SEC61A1
SRRD
ZNF451
NCDN
KIAA0319L
SUGP1
MAU2
DGAT1
FAM156B
ZNF2
VPS33A
PEPD
TMEM39A
SMIM12
CCDC124
RAB1A
ZNF527
PANK3
HIRIP3
MRPL3
C19orf48
TOP2B
RPL18
TOP3A
SMCR8
LRCH4
FBXO24
PPIA
SFSWAP
SRSF2
MFSD11
RTF2
CNPY2
CLDND1
IPO7
CNIH4
KPTN
CAPN15
RTTN
TMEM69
RASEF
AP5Z1
ZNF805
CCDC86
RPL6
SRSF1
UBAC1
AKIRIN2
FANCD2
CNOT4
SPRYD3
DDX46
ZNF133
SRPRA
TSFM
RPS3A
WNK1
TIMM50
ATP5PO
SNAP47
TOR1A
SDE2
JMJD4
ZNF335
RTEL1
DYRK1B
CASC3
GATAD2A
USP42
USP35
KCTD21
BOLA2-SMG1P6
PKN2
MAGOH
SEL1L
RBSN
SURF6
L3MBTL2
TBC1D22A
TMEM258
FEN1
SCAMP3
CCNC
CCNI
FAM133B
ZBTB4
HBS1L
KDM4A
RPLP2
FASTKD1
POLR2A
ABT1
RPTOR
DUS3L
PSME3
GPBP1L1
EIF2B5
AARS2
GPANK1
CSNK2B
SERP1
EIF2A
SERPINI1
PDCD10
TAS1R1
NOL9
EXOSC4
MTR
IARS1
SLMAP
PPP6C
HNRNPL
PDCD4
FBXW2
RERE
CIAO3
MON2
TMEM160
DYNC1I2
EIF1
EIF5
SUFU
MRPL44
PPIL4
RAB5IF
MRPL4
C12orf73
VIPAS39
AHSA1
TFEB
REXO4
NUS1
CLCN7
MXI1
DNM2
EFTUD2
CCDC103
TMEM186
PMM2
ECSIT
APTX
UFSP2
TBCB
POLR2I
LTO1
ZNF595
AJUBA
VPS50