ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX535454 | A-375
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◣ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

WDR74
GSTA4
FRA10AC1
STX16
MTRNR2L2
SEMA6A
FAM98B
MTRNR2L8
DRG2
DCAF10
TATDN3
NSL1
SMARCD2
GBA
EXD1
CHP1
C17orf75
FAM227B
DTWD1
H4C14
FLOT1
IER3
STX18
TPT1
CDK5RAP1
WDR36
IST1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
SLC5A3
MRPS6
RGPD2
RGPD1
MAN2C1
RAD54L2
TACO1
NUF2
CUL4A
PCID2
BNIP1
DCP1A
ANKRD40
DPY19L4
TRIP4
ZC3HC1
MTF2
DSTYK
NME1
LRRC37A3
INTS12
GSTCD
INPP5F
TMEM242
WDR31
H2BC21
H2AC20
H2AC21
COMMD2
AURKAIP1
H4C15
RBBP5
SAR1B
SLC24A1
TMEM256
TPRKB
STAT6
H4C11
EIF2D
ANP32E
NKIRAS1
RPL15
TTC4
SLC9A1
SF3A3
SLC25A51
LRATD2
CTNNB1
PLEKHM3
NFE2L2
TEFM
NDUFS3
KBTBD4
H4C12
KDM1A
NDUFC2-KCTD14
NDUFC2
PSMD1
PDE4DIP
ERCC1
H4C3
NDUFS7
GTF2H2
RPS27
MTBP
MRPL13
ACOT7
KANK1
ATXN7L2
ACBD6
CCDC107
SPRY4
SLC20A1
PEX3
ADAT2
H2BC18
H3C13
TTC26
PHLDA1
TOMM5
LAMP1
ZMPSTE24
SERPINE2
S100A6
HMGB1
USPL1
DMAP1
HEXIM2
MRPL40
HIRA
VPS45
ASB6
NMNAT1
LZIC
SMG8
DDIT4
PIGC
ZNF827
RBM28
WWOX
PIGL
AMOTL1
POLR3B
TARS2
XPA
TOR1AIP1
RPS6
WDR70
RPL37
ID1
TUBGCP3
NR1H3
ACP2
SIRT4
ANAPC5
NPM1
CCNL1
JUNB
ZBTB45
RPL3
JRK
BTF3
RRP15
ALKBH3
RPL28
ZER1
USP30
MRPL39
CBX5
HNRNPA1
VPS25
DTX2
E2F6
OPA1
FBXW11
ZNF609
FAM228B
SF3B6
SNRPE
DNAJC25-GNG10
DNAJC25
CT45A10
KCTD5
COX16
LDAH
H2BC11
H2AC11
TFAP2B
RPL9
LIAS
SELENOH
LIG4
ABHD13
AARSD1
SNTB1
EEF1A1
SLC35A3
NUFIP2
PDE8A
SSBP2
SAAL1
GFOD2
SPATA24
SOD2
WTAP
RCOR3
EIF3G
RFXANK
BORCS8-MEF2B
BORCS8
POLR2C
ARL14EP
BTG1
FXYD3
NOTCH2
ZNFX1
DR1
FEM1B
PRKCE
ZNF460
G3BP1
ITGB3BP
EFCAB7
SS18
MTERF4
MRPS23
MBTPS2
RPS27A
CLHC1
SLC6A15
RPS3
MTOR
S100A2
RPS20
NSUN4
PTCD1
CPSF4
OTUD7B
NR4A1
ACY1
CLTC
RICTOR
SOX5
SSBP1
SNRPB2
RPS9
ABHD12
RPL11
NNMT
MRPL21
IGHMBP2
SNRNP70
COQ8A
BFSP1
TUBB3
ERCC6L2
PPP6R1
MTMR2
ZSCAN30
SLC44A1
CGGBP1
ATP5MC2
C3orf38
ACBD3
GTF3C6
KCTD3
MRPL1
H1-3
NCSTN
COPA
AGMO
SAGE1
MRPL24
CDKN2AIPNL
RBM45
H3-2
C12orf57
R3HDM2
LOXL4
UCHL5
RO60
MTAP
H2BC13
H2AC13
PYROXD2
BCL9
BOD1L1
POLDIP3
DNAJC14
SECISBP2L
H2AC19
H2AC18
H3C15
H3C14
NDUFA9
AKAP3
STAT3
MOSMO
ZNF76
STARD13
SERPINA3
PGBD2
PTPRG
SEC13
KIF22
UCN2
MIS12
DERL2
TOMM20
KCNMA1
WDR11
ALG1
POLR3F
DZANK1
WWTR1
MRPL53
MRPL48
QSOX1
H1-4
RPL32
DDX23
IFRD2
KMT5B
ZC3H6
FEM1A
TBL3
COPS7B
CALR3
C19orf44
CDCA3
TMEM41A
TIMM21
FBXO15
BRWD1
UBC
NCBP2AS2
NCBP2
ABCF2-H2BE1
ABCF2
ATAD2
PPP5D1
CALM3
TSNAXIP1
RANBP10
PPRC1
UNK
PAFAH2
GSPT1
POLR2J3
TMEM11
TMEM199
POLDIP2
WDR53
FBXO45
TMEM222
SPATC1L
CALM1
GATB
FOXJ3
CLPB
SSNA1
ANAPC2
RBL1
CCDC88A
TSN
TOMM22
SPNS1
CALM2
MRM3
LRP6
GLOD4
CYCS
ZSCAN22
MRTO4
EMC1
ORMDL3
TCF3
RPL8
COPS8
KBTBD7
TIMM22
UBB
CCDC77
NUP214
SMN2
SMN1
BTRC
CNOT1
PEMT
TMEM115
KMT2D
MED23
DOHH
CFAP410
C16orf91
POMZP3
ZNF337
KPNB1
SCAF1
SYMPK
CHMP4B
ST3GAL2
CTDP1
BOD1
AP2S1
WASHC2C
TSSC4
PSMD3
PRCC
FOXA3
CDKL3
AHCYL2
PNKD
SNX17
EIF2B4
AAMP
ING3
TSC1
GFI1B
HTRA2
PA2G4
GTF2H3
EIF2B1
ADPGK
PHIP
TCEA2
CKS2
HEXA
ZNF212
WASHC2A
SMPD3
PEX26
CLEC16A
NAGPA
THRAP3
KCTD9
CDCA2
KBTBD6
RPL22
UBE2B
ZFAND2A
KDM5A
NUDCD1
TTC13
ARV1
TRIAP1
ZCCHC4
UBE2D3
PPP1R12B
ZKSCAN2
ZNF721
PIGG
NXF1
MED15
PKM
ATP5MF-PTCD1
ATP5MF
MCM7
AP4M1
RPS6KB2
RPL18A
RPS28
NDUFA7
ATG14
OSCAR
NDUFA3
TOB2
MAF1
FAM207A
CRTC2
SCNM1
LYSMD1
INVS
ERP44
IPO11
TMEM127
CIAO1
OAZ3
MAD2L1BP
MICOS13
HSD11B1L
SCRIB
C8orf33
RPIA
PANK4
CDC25C
ZNF444
GTPBP2
NPRL2
CYB561D2
WDPCP
NOP14
MDH1
GRK4
GPAM
MAIP1
PPP1R12C
DNAJC11
RPS26
EIF4A2
DIP2A
DUS2
DDX28
FAM53C
TMTC3
CEP290
TRAPPC3
ZW10
CCAR2
CYP51A1
TNFAIP1
IFT20
PHB
BRIX1
SLC35B4
MAPKAPK5
ZNF384
RANGAP1
ATXN2L
UBR2
C1orf159
MXD4
SRSF11
SMG5
RBM42
FUS
UBQLN1
LRRC29
MRPS15
TBRG4
NUP153
ZNF56
RLF
PSMF1
PGBD4
EMC7
KAT7
COMMD1
PINX1
MFN2
HMBOX1
C19orf53
PSMD11
MRPS35
CCT4
KDM4B
DNAJA3
UBE2Q1
SLC25A19
DCAKD
ADNP
UBQLN4
LAMTOR2
NSFL1C
TAF5
HMGCL
GHITM
BANP
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
ZFYVE1
TRIP12
FBXO36
PBLD
HNRNPH3
GID4
ATPAF2
CCDC146
SPRYD4
LRRC40
STK25
INTS9
DPP9
MMACHC
VPS37A
CNOT7
RIC8B
LUC7L
AP2M1
NOC4L
DDX51
NMT1
TTC33
DOLPP1
ENDOV
CIC
SPTLC1
SP2
MRPL20
SLC33A1
ARHGEF12
ZNF420
ZGPAT
ARFRP1
PIGU
ZFYVE19
DNAJC17
AHCTF1
HNRNPAB
ACOX3
NTAN1
COMMD9
TEPSIN
NDUFAF8
TCF12
MRPL58
CSRNP2
EIF3F
RPL29
RCL1
IDH3B
LETM1
RBM6
BIRC5
DNAJB12
STAU1
ABRAXAS2
SECISBP2
LONP1
CATSPERD
TFPT
PRPF31
ARF4
RALBP1
TRMT44
SUPV3L1
SNAPC3
SMARCAL1
GTF3C5
HSP90AB1
GFUS
DDX1
COQ9
CIAPIN1
SART1
RPL12
LRSAM1
ZFPL1
CDCA5
UBL7
H2AX
DDX49
COPE
GTF2I
PHF13
RCOR1
MRPS16
FDPS
JOSD2
PIK3R3
HSP90B1
GTF2H4
COG2
ZNF749
DCAF8
ARHGAP9
ELOC
RAB5C
ZC3H10
CTU1
TSC2
NTHL1
WASHC5
NSMCE2
GABPB1
DESI2
TOP3B
BOLA1
RPS7
DCAF1
TRAF7
PARL
WAPL
MARS1
TMEM59
TCEANC2
NDUFV1
CAND1
IP6K2
CBWD5
U2AF1L5
U2AF1
TRAK2
STRADB
CHCHD3
RWDD1
CRBN
PHF12
SOX6
C11orf58
B3GALNT2
CBWD3
METTL25
CCDC59
VCPIP1
C8orf44-SGK3
KLLN
COX7C
PNRC1
SLC7A6OS
PRMT7
PSMD2
MCU
CANT1
ADPRS
WDR87
SIPA1L3
TRMT61B
SLC3A2
THYN1
ACAD8
IPPK
PABPC1
SKIV2L
NELFE
BRF2
ATF4
PRKACA
RPS19
BICD2
USP48
METTL9
GUSB
POLG
SMIM13
PTEN
SIRT2
NFKBIB
MANF
SSR3
ZNF500
TARBP2
FAM149B1
ECD
ZNF148
PSMD4
TIMM13
NDUFB5
MRPL47
THOC6
HCFC1R1
CCDC90B
RPS16
RUVBL1
UBE3B
KCTD10
NOLC1
GFM1
COQ7
RPLP1
TRUB1
VIRMA
ASXL1
TMEM217
TBC1D22B
SERBP1
SESN1
CMTR1
UBA52
PCBP2
COA6
TFRC
EIF4A1
DNM1L
POLR2E
NLK
ZC3H3
CFAP20
HAGH
FAHD1
COPS7A
HPS4
RPLP0
NDUFAB1
LARS1
CAPN10
BMS1
NEURL2
CTSA
CACTIN
BUB3
XRRA1
SPCS2
B4GALT7
SRP68
KAT8
SPRED1
WBP2
ATRIP
REXO1
BUB1B
ACTR1A
USP15
PARK7
ZNF518A
CLP1
TMEM230
SF3B2
VCP
PHB2
FAF1
GTF2H2C_2
GTF2H2C
PTDSS2
CWC25
CBWD6
KMT2B
SLC4A2
SLX1B
SLX1A
BOLA2B
BOLA2
WDR25
WARS1
RNASEH2C
PALB2
DCTN5
HIF1AN
MRPS11
MRPL46
ZFAT
MDM4
RANBP2
ZNF225
TIGD6
HMGXB3
SNRPD3
GUCD1
POLR3D
WRNIP1
CFL1
DFFA
XPOT
EIF2S2
RPP30
SUMF1
CEP350
FBXO46
C5orf51
PTBP1
NOL10
CCP110
CHCHD6
ZFYVE28
SEC11C
ZNF189
MRPL50
UBN1
GLYR1
CCDC150
PHAX
SEC61A1
RPL23A
SPHK2
FBXO28
RAD23A
CDK8
C12orf43
CFAP99
WDR4
SRRD
CDK5
FAM156A
DGAT1
SMIM12
ZNF451
NCDN
KIAA0319L
SUGP1
MAU2
SRSF2
MFSD11
RAB1A
MRPL3
FAM156B
ZNF2
CASC3
PPIA
VPS33A
SDE2
PEPD
C19orf48
LRCH4
FBXO24
TMEM39A
CCDC124
IPO7
ZNF527
TMEM69
PANK3
HIRIP3
RASEF
TOP2B
RPL18
TOP3A
SMCR8
SFSWAP
RTF2
CNPY2
CLDND1
RPL6
SNAP47
SRSF1
CNIH4
KPTN
JMJD4
CAPN15
RTTN
EXOSC4
AP5Z1
ZNF805
ZBTB4
CCDC86
UBAC1
AKIRIN2
POLR2A
ABT1
TSFM
RTEL1
FANCD2
CNOT4
SPRYD3
RPS3A
DDX46
ZNF133
SRPRA
WNK1
TBC1D22A
TIMM50
ATP5PO
TOR1A
ZNF335
ZNF595
SURF6
PKN2
DYRK1B
CCNC
GATAD2A
USP42
USP35
KCTD21
BOLA2-SMG1P6
MAGOH
SEL1L
FAM133B
RBSN
L3MBTL2
TMEM258
FEN1
EIF2B5
MRPL44
SCAMP3
CCNI
HBS1L
KDM4A
AARS2
RPLP2
FASTKD1
RPTOR
DUS3L
PSME3
GPBP1L1
IARS1
REXO4
CIAO3
EIF1
GPANK1
CSNK2B
SERP1
EIF2A
SERPINI1
PDCD10
TAS1R1
NOL9
MTR
DYNC1I2
SLMAP
PPP6C
HNRNPL
PDCD4
FBXW2
RERE
MON2
TMEM160
EIF5
SUFU
ZC3H11A
PPIL4
RAB5IF
MRPL4
C12orf73
VIPAS39
AHSA1
TFEB
NUS1
CLCN7
MXI1
PSMD8
DNM2
EFTUD2
CCDC103
TMEM186
PMM2
ECSIT
TVP23B
APTX
UFSP2
TBCB
POLR2I