ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX20230571 | Ishikawa
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◣ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

MTF2
CTNNB1
CKS2
PPP5D1
CALM3
VCP
TSC1
GFI1B
ARRDC4
KDM4A
IP6K2
SOD2
WTAP
DDX23
CLTC
CYCS
LRP6
NXF1
GATB
PDCD4
CALM2
DOLPP1
ATAD2
LAMP1
SESN3
HEXA
NAGPA
CFAP20
CALM1
PHIP
CNOT1
SAP30BP
RECQL5
MCU
KCTD9
CDCA2
CCDC77
KDM5A
KPNB1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
ZC3H6
CYP51A1
KMT2D
ZNF124
BRWD1
NOTCH2
TCF3
ZKSCAN2
SENP2
SPNS1
TMEM199
POLDIP2
TOP2B
RPLP1
PPWD1
CENPK
ARNTL
WASHC2A
MXD4
CCNL1
TSPYL2
DYRK1B
ATG14
IPO11
RBM42
TYK2
CCDC88A
KMT5B
WASHC2C
HEXIM2
DDIT4
POLR2J3
TAF5
MSMO1
KDM4B
RBL1
PRKACA
NLK
HSP90B1
MRM3
GLOD4
SPATC1L
TRMO
PBLD
HNRNPH3
ZFAND2A
SLC3A2
TBCCD1
DNAJB11
CCNI
TROAP
PIK3R3
DOHH
PI4K2A
CCNG2
HNRNPAB
TDRKH
TOMM22
NUP214
SLC9A1
DIP2A
ENDOV
GATAD2A
GABPB1
ABCF2-H2BE1
ABCF2
SPRED1
COQ7
IST1
VIRMA
TOM1L2
DRC3
MRTO4
EMC1
ARHGEF12
RCOR1
FOXJ3
PRDX1
ZNF518A
RCL1
UBE2D3
ERAL1
TRIAP1
RFX5
MRPS35
H2AX
FAM204A
GOT1
UBC
STX18
PINX1
OGT
AJUBA
PKM
FUS
HBS1L
TRIP4
EIF2D
OPA1
SPTLC1
NEURL2
CTSA
PAFAH2
TMEM41A
ATP5MF-PTCD1
ATP5MF
TMEM242
RPLP0
AP1G1
METTL25
CCDC59
MANF
METTL1
EEF1AKMT3
RPS26
MYLIP
ARL6IP1
MTMR4
BLOC1S1
WASHC5
NSMCE2
NCBP2AS2
NCBP2
WDR53
FBXO45
ZFAND4
TFCP2
SHBG
FXR2
CDCA3
MEF2A
TMEM222
SP2
JPT1
GTF2H3
EIF2B1
MTMR2
UBB
VPS33A
HSPA5
HAGH
FAHD1
TOMM40
IDH3B
L3MBTL2
GPATCH3
TRIP12
FBXO36
DNAJB12
TIMM22
FDPS
GIPC1
UBN1
GLYR1
MAGOHB
COPS8
AP3M2
SNRNP70
MVD
RERE
HMGCL
ACTL6A
WDR25
WARS1
RPS3
NDUFS7
ATF4
NMNAT1
LZIC
VAMP1
HMGCR
ZNF212
PNRC1
ATP5F1B
SSNA1
ANAPC2
SMN2
SMN1
ID2
H3-3B
SRSF7
BRIP1
CDKL3
UBE2B
RMND5A
RNF103-CHMP3
HMGB1
USPL1
UBQLN1
C12orf43
ZNF56
KAT5
P4HB
ARF4
ALKBH3
NDUFB5
MRPL47
IARS1
FAF1
CALR3
C19orf44
UBALD2
GSTO2
TEPSIN
NDUFAF8
ABCB8
IER5
MED23
GTF3C5
RPUSD4
FAM118B
AMOTL2
MRPL21
IGHMBP2
C2orf49
MAGOH
G3BP1
TIMM21
FBXO15
MPV17L2
PEX3
ADAT2
GPAM
DUS2
DDX28
NABP1
SPRYD3
GHITM
COMMD9
PSTK
KANSL2
C5orf51
CDK4
ZNF143
MCM7
AP4M1
TCF12
MRPL48
HPS5
GTF2H1
RPL22L1
SON
GART
RPL13A
PEPD
APTX
DNAJA1
EIF4A1
ZNF8
DGLUCY
RPS6KA5
RPS28
NDUFA7
FAM149B1
ECD
PLK2
GSTA4
PFKM
SENP1
ADK
EIF4A2
VPS37A
CNOT7
SRSF1
RBX1
SUPV3L1
ATXN2L
DCAF8
MRPL58
PACSIN2
SLC25A36
ZNF571
ZNF540
COA6
C19orf48
CTDP1
PCCB
FEM1A
KCTD5
GRHL2
RAP2A
DYNLL1
BORCS7
COQ9
CIAPIN1
RPP30
SLC25A42
MRPL27
EME1
HNRNPUL1
MRPL45
EIF5
ZNF383
FDFT1
ACSL3
TMEM39A
SFSWAP
FANCD2
PAN2
TSFM
PPP1R8
CNOT3
MFN2
RPL5
BAGE5
BAGE4
BAGE3
BAGE
CHCHD1
VPS11
ITGB3BP
EFCAB7
ING3
ARL15
TMEM217
TBC1D22B
MRPL39
HOMEZ
DNTTIP2
TET3
POMZP3
MED4
APLP2
MTERF4
TOB2
CHCHD6
XRRA1
SPCS2
SLC25A19
PSME3
SLC25A53
SEC13
SPRYD4
SLC7A6OS
PRMT7
UBE3B
KCTD10
ZSWIM7
TTC19
ZNF574
RPL28
TSN
SNRPC
USP42
TULP3
SEL1L
C9orf85
ABHD17B
HERPUD1
CALR
SRPRA
ABT1
DIABLO
FAM126A
POLG
PTP4A1
TAOK2
HIF1AN
COPZ1
TRMT61B
HMBS
MAIP1
RLF
MTHFD2
ELAVL2
TEDC1
ENSA
ASF1B
PPIA
LMAN2
AFF1
ZCCHC4
SRSF11
LRRC40
RPL12
LRSAM1
NUFIP2
KHSRP
DNAJC9
SLC34A2
MRPS11
MRPL46
NOLC1
MIS18A
OAZ1
TFRC
MRPS16
ACAD9
SF3B5
BRIX1
F11R
RPL3
TBL3
PHF5A
ACO2
ZNF839
HOXD9
GID4
ATPAF2
TAF6
CNPY4
YWHAQ
AAAS
DMAC2
TBRG4
RASEF
ATP5IF1
OAT
RPS16
ATP6V1G1
RAB4B
USP30
DCAKD
NMT1
CCT2
ADPGK
CSRNP2
GTF2B
METTL9
DDX46
ATG7
ZNF721
PIGG
HGS
ARL16
MICU2
BRF2
RPS12
UNK
VCPKMT
CDC25C
FAM53C
TRUB1
CBWD5
CBWD3
SLC30A6
ZFPL1
CDCA5
TNKS
POLR3F
DZANK1
DDX50
PSPH
CCT6A
FREM2
MCCC1
ADNP
EEF2
HNRNPL
IDI1
PISD
CDH1
KAT7
FAM133B
DDX19A
ICE2
UMPS
DNAJC19
EVI5L
TBC1D22A
YPEL2
COQ8A
CASC3
LAS1L
CFAP43
CWC25
RBM14-RBM4
RBM14
CYLD
DCP1A
WDR11
MRPL4
GOSR1
TUFT1
EIF1
SLC25A3
FRA10AC1
ECSIT
ZSWIM6
RRBP1
CBWD6
KDM5C
ATRIP
STX16
GTF2IRD2
GTF2IRD2B
LRCH4
FBXO24
POLR3D
CCDC12
IFRD2
C2orf42
RPS9
RHOB
RANBP6
ATP8B1
HMGCS1
CCNC
COMMD1
CCT4
PARPBP
NUP37
ZNF687
EEF1AKNMT
RWDD1
PA2G4
VCL
SAP18
CFAP410
ZNF335
SNAPC5
CCDC86
RETSAT
ELMOD3
SDHB
CCDC130
NUP160
SRSF6
PGBD4
EMC7
CCDC97
TIMM17A
BSDC1
AZIN1
DSTYK
NDUFS3
KBTBD4
TOP3A
SMCR8
RTTN
KDM2A
SMG5
PARL
MSTO1
TMEM53
ARMH1
PTCD3
POLR1A
CKAP2
C8orf33
OAZ3
GTF3C3
IMPDH2
PSMD3
SRSF2
MFSD11
SLC26A2
DCP1B
SPTY2D1
ZFYVE21
XRCC3
UHMK1
NRDE2
BRMS1
HOXD8
SPRING1
RNFT2
PKN2
TMEM126A
COQ10A
WDR89
RPL18A
IL4I1
NUP62
ATF5
SSR3
SETD3
CCNK
TACSTD2
COPS7B
PLEKHM3
NARF
TENT5C
MRPL37
CYB5RL
TJAP1
TMEM256
TBCB
POLR2I
SLC2A1
NECAP1
GTF2I
ZNF444
RARS2
ORC3
SACM1L
AP5Z1
PNP
TBC1D23
RANBP2
ATP9B
LRRC29
TFIP11
POLR1F
GTPBP10
SNRPD3
GUCD1
FAR1
COMMD4
NOC4L
DDX51
STK19
DXO
FBXO28
WDR4
ZBTB4
POLR2A
AP2A1
ZBTB45
PANK2
AGFG2
SF3A3
LMTK2
KLLN
PTEN
PRTG
CHMP1B
SUMF1
DDX41
U2SURP
AK2
CRLS1
ATP5PD
KAT8
ZFAT
BRAP
ACAD10
CCNH
C12orf65
MAPKAPK5
KLF5
NOL11
U2AF1L5
U2AF1
TOX4
RAB2B
CRBN
ARHGAP19
DDX5
CEP95
CIC
PDCD6IP
TDG
PEX26
DNAJA3
SLC24A1
TMEM230
ISOC2
TMEM128
FAM76B
CEP57
RPS2
VAC14
UBAP2
NAT10
ANKFY1
PSMF1
TMEM254
USP8
RPTOR
SFPQ
ANKHD1-EIF4EBP3
ANKHD1
PCNA
CEP350
NUP54
THUMPD1
BCL2L13
CCDC134
TEFM
PGAP2
STIL
PHF1
UBE2C
ZSCAN22
TIMM50
STARD4
ZC3H10
SELENOH
HDAC6
TRA2B
ATP5MC2
XPO1
RPL22
KDM4D
CWC15
MTRR
FASTKD3
PPP4R3B
ACOX3
TRMT44
TSR1
SGSM2
NDUFV1
RBSN
IVD
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
RPSA
LRRC46
LGMN
MDM4
KCTD7
SECISBP2
CAND1
ZSWIM4
WDHD1
SOCS4
HAUS5
SPTLC2
SRP9
RFX1
MMUT
CENPQ
WDR6
METTL2B
ANKZF1
OXNAD1
DPH3
RPS3A
RUBCN
CBX5
HNRNPA1
RPS20
CSKMT
C11orf98
PDK2
GOLGA3
THRAP3
RPL11
NRDC
HUS1
ETF1
PHAX
ERCC5
LEMD3
IQCG
LMLN
ATF7-NPFF
ATF7
C16orf91
TCTN3
NUF2
MIS12
DERL2
SCFD1
COX10
RBM19
SARAF
FOS
THOC1
MRPS15
DAZAP2
POC5
CKAP2L
SRCAP
LOC730183
PNRC2
SKP1
SEC31A
SGO1
PRKAG1
PHKG2
GINS1
CLN8
METAP2
HOMER1
C6orf226
NOP58
NUP133
LONP1
CATSPERD
ASH2L
RAB11A
MRPS23
EXOSC3
ATR
CAAP1
ABL1
FAM83D
MAEA
SNX11
SETDB2-PHF11
SETDB2
CAB39L
TFPT
PRPF31
SLC44A2
MARCHF8
DNM2
ARFGAP2
TMBIM6
SWSAP1
DMRT2
NDUFB6
TMPO
RFXANK
BORCS8-MEF2B
BORCS8
TTC13
ARV1
NUDT15
DNAJB1
TECR
BOD1L1
NCL
CITED2
BMS1
MCCC2
ZWINT
PPFIBP1
ATP6V0D1
DDX1
ATAD3B
NUP42
ZFYVE26
NBN
HDAC4
TK1
AFMID
PPT1
SDHD
TMEM170A
SKIV2L
NELFE
PSMD4
TAF15
SLC38A2
DNM1L
TSR2
MRPS22
ATG101
SPSB3
NUBP2
SMIM13
PALB2
DCTN5
LNPK
FEM1C
SLC1A5
HSPA1B
HSD17B7
EIF4A3
GSPT1
ABCC5
SH3GL2
PSMA5
NME1
TXN2
SLX1B
SLX1A
BOLA2B
BOLA2
BOLA2-SMG1P6
NBPF1
RBM25
EIF3F
RNASEH1
TMEM183A
SMARCAL1
GARS1
SEC62
MAGI3
RAB5B
SEC24C
PPP4R3A
TSNAXIP1
RANBP10
H3C2
SLC25A26
SRSF3
DDX39A
LTV1
PAF1
MED29
ZNF337
MRPS7
GGA3
BDP1
SART1
NRL
DCAF11
TARBP2
RTN4IP1
QRSL1
KNTC1
HNRNPA0
FAM156A
FAM156B
EIF2S2
TIMM44
ABRAXAS2
PTPN4
SNX5
MGME1
C5orf15
NCDN
KIAA0319L
EEF1E1
SMIM27
TOPORS
MYH7B
GSS
AARSD1
DNAJC3
CCNB2
PCNX4
POLR2J
C12orf73
RFWD3
MRTFA
CHEK1
GPR108
MYO1E
ZNF2
ATAD3A
POLR3B
YIF1A
DHX40
NOCT
PSMD7
RBM22
TMEM11
DERL3
HEXIM1
BCORL1
H1-4
S100A13
CHTOP
TIGAR
PARK7
POLE3
C9orf43
CUL4A
C19orf53
PCID2
AARS2
RPLP2
CZIB
CREBL2
ANAPC1
LOC101927572
ALKBH6
CNPY3
NFX1
MRPL3
TUBGCP6
TAX1BP3
EMC6
RBM28
CALU
USP16
MRPL55
YEATS4
ADAT1
LDAH
NDUFC2-KCTD14