ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5501657 | A-375
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◣ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

WDR74
GSTA4
H4C14
H4C15
GBA
NUF2
FRA10AC1
DSTYK
MTRNR2L8
SF3A3
MRPL21
IGHMBP2
RBBP5
STX16
INTS5
POLDIP3
EIF2D
C12orf57
SNAP47
JMJD4
SELENOH
NR1H3
ACP2
H2BC21
H2AC20
H2AC21
S100A2
FAM227B
DTWD1
SAR1B
INTS12
GSTCD
DRG2
SSBP1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
S100A16
TARS2
H4C8
NDUFC2-KCTD14
NDUFC2
HMGB1
USPL1
TATDN3
NSL1
SMG8
NDUFS3
KBTBD4
TRIP4
ZBTB45
NMNAT1
LZIC
DCP1A
MTRNR2L2
CCNL1
RPL37
RPS7
SLC44A1
RAD54L2
H4C11
GARS1
EIF1AD
BANF1
NPAS4
CCDC88A
YARS1
S100PBP
H1-3
NME1
TBC1D19
MRPS18C
HELQ
DPY19L4
ZNFX1
LRRC37A3
PSMF1
MRPS23
H2AC19
H2AC18
C17orf75
DMAP1
SIRT4
LAMP1
H1-4
MTERF4
CUL4A
PCID2
STAT3
CCDC107
METTL9
RUVBL1
NOC4L
DDX51
H4C12
UQCC1
GTF2H2C_2
GTF2H2C
SEC13
MRPL40
HIRA
ERCC6L2
SCNM1
LYSMD1
AAR2
KLHL20
MGAT5B
ETV4
RPS6
JRK
H1-2
POLR3E
MTF2
H3C3
STOML2
PRRG2
NOSIP
RGPD2
RGPD1
TAF1D
C11orf54
PDE4DIP
AURKAIP1
KMT2C
TUBGCP3
CT45A10
MPHOSPH10
MCEE
SRSF4
SMARCD2
CDKN2AIPNL
WDR24
PSMD9
HPD
ARL8B
PPIP5K2
TSFM
LRRC59
MAT2A
DDIT4
NFE2L2
H2BC11
H2AC11
SYT7
STX18
H3C15
H3C14
DUS1L
CLUH
H2BC18
H3C13
VPS28
TVP23B
NUP54
C12orf65
WDR31
TTC4
PSMD6
MRPL1
TBL3
GEMIN7
G6PC3
DNAJC25-GNG10
DNAJC25
TTLL11
JUNB
BNIP1
TSC2
NTHL1
ADPRHL1
RPLP1
DDX19A
STAG1
MLEC
POLG
RANBP2
REXO4
RPL41
DDX1
GTF2H2
LDAH
ALG10B
TMED2
LAMTOR5
NUP153
COMMD2
SRSF7
AQR
FAM98B
TEFM
SDHAF3
ATP5MC2
SPRYD4
PMPCA
ENTR1
MRPS31
NR1H2
H3-2
ST3GAL2
COMMD1
CCT4
CLCN7
SNRPE
MRPL34
USP30
DCAF10
MORF4L1
DHRS3
RPS20
SCAND1
INO80B
RPS19
GFM2
FZD1
PHLDA1
PPRC1
ADPRS
FAM133B
GTF3C3
GINS3
RPL27
NSUN4
BANP
SNRPB
KNL1
MRPL20
RAB5IF
KCNMA1
SNRNP70
CZIB
RCAN1
ZNF749
TIMM22
RPL12
LRSAM1
TACO1
NFX1
ID1
PYROXD2
ATXN2L
RPL29
PHF12
MCOLN1
ZNF398
NOL11
ZNF425
MAPKBP1
MRPS2
C9orf116
ADAR
COQ8B
KDM1A
VIRMA
TMEM101
PRPF4
CDC26
CBX5
HNRNPA1
TTI2
VPS72
ACYP2
H4C9
BRF2
TOR1A
WDR36
MAZ
BAX
C8orf37
TOB2
CCAR2
MRPL58
RPL26L1
OMA1
DAB1
VPS36
GPRC5A
ILF2
HEXIM2
PAFAH2
RPTOR
H3C2
ZNF3
H4C1
H3C1
KCTD5
UCHL5
RO60
RRP15
RPS15A
MAPK1IP1L
DNAJC2
TRMT61B
C12orf73
SFPQ
ERCC1
MRPS14
TRPM7
TMEM222
RPS3A
H4C3
RIN1
SLC33A1
UBL7
PHB2
POLR2J
OTUD7B
EMC4
TOMM7
DNAJB4
FAM207A
C8orf33
DHX35
COX16
ZNF609
MRPS35
MTIF2
PPP4R2
BMS1
MRPL55
YIPF2
TIMM29
ARL6IP1
EIF3G
MYL5
ATP5ME
ZC3H6
ZER1
CIAO3
INO80C
MED18
ADNP
MED4
PNPT1
TMA16
ESCO1
HSPA6
METTL25
CCDC59
EFTUD2
CCDC103
PURB
CPSF1
CCNT1
RBM39
FCHSD2
CCDC15
CLUAP1
SLX1B
SLX1A
BOLA2B
BOLA2
ILF3
LMNA
ITGB3BP
EFCAB7
TBC1D13
CSKMT
C11orf98
CTNNB1
MAF1
AARS2
LIG4
ABHD13
GATD3B
GATD3A
PPP1R14B
IDH3B
FBXO28
PRDX1
CIAO2B
CES2
TMEM39B
GPN1
CCDC121
SLC9A1
DUS2
DDX28
FAM228B
UBA52
CDK5RAP1
SF3B6
CD2BP2
FAF2
NDUFS7
TRAF7
MIA3
TSNAX
ALDOA
RPL28
RASA1
MAP2K3
H2BC14
H2AC14
RPL5
H2BC4
H2AC6
SAAL1
TMEM250
CALM2
RPS3
C19orf53
SNRPD1
ZMPSTE24
TOR2A
HSD17B12
YWHAE
RPGR
H4C6
BOD1L1
TAF5
COMMD9
MAN2C1
EFCAB2
UTP3
SOS1
PPP1R11
FAM200B
SNX17
EIF2B4
DCAF8
POLR3B
TPD52L2
PARP6
ADAM22
ZC3HC1
TBPL1
ATAD2B
WDR70
PUM3
SNRPB2
MTOR
BIRC2
RAB11A
RRP9
PARP3
TRIB1
SEMA3B
SH3TC2
HEXA
NBPF1
CAAP1
TMEM259
SMG7
FRMD4A
FXYD3
RPS16
RBSN
MTR
NFKB2
MRPL27
EME1
SF3B4
LRWD1
ALKBH4
YTHDF1
C11orf49
INPP4B
MBNL2
TCF12
WDTC1
YTHDF2
ATF6
CRB1
SHMT1
POLR2J3
DOHH
PANK4
GTF2B
EPRS1
UBA2
H4C5
PCM1
SNX19
RPS27
SNF8
NDUFA12
NBPF15
BCAT2
TBL1X
H3C12
OSCAR
NDUFA3
SART1
SPHK2
RPL18
AP1G1
DIAPH1
SACM1L
MBTPS2
C5orf15
ZBTB40
HEATR1
PARP2
USE1
TMEM183A
R3HDM2
NACA
NAA20
MBLAC1
DPP9
TTC33
CNPY2
NUP107
THEM4
EIF2B3
DHX8
SYCE2
FAM3C
FARSA
PPP6R1
SUDS3
IQSEC3
CPT2
CDC25C
FAM53C
H2AX
SRCAP
LOC730183
NOP56
TTC17
CDC73
NUCKS1
RBM45
ZNF286A
SLC20A1
RPS24
INPP5F
BTRC
MRPL24
GALK2
COPS2
BUD13
PBRM1
GNL3
ASB6
TBC1D23
NDUFAF5
ESF1
LCMT2
ADAL
ACBD3
SRA1
H2BC15
H2AC15
GOLGA1
STYXL1
MDH2
NUP133
PRKAR1B
MRPL30
MITD1
DGUOK
MLLT11
CDC42SE1
IREB2
CHD1
NCOA7
CALR3
C19orf44
ZCCHC4
RFXANK
BORCS8-MEF2B
BORCS8
COPS7A
RNASEH2C
TAS1R1
NOL9
RBM28
PCIF1
SLC39A3
BLOC1S6
TSSK6
NDUFA13
SRFBP1
GPR180
PARD6A
ACD
TSN
TOR1AIP1
ZCWPW2
AZI2
INTS4
ACBD5
STX4
MRPL42
ENO1
ZNF696
EXOC7
PDS5B
PSMD3
PARK7
ARHGAP19
EXOSC6
QTRT1
RPL26
NCOA5
DCLRE1B
AP4B1
WWTR1
DHRS13
FCRLA
MAGOH
IQCH
AAGAB
USF1
AVPI1
ZSCAN30
OCIAD1
H4C4
TIMP3
SMN2
SMN1
UBE2D3
OAZ3
LRRC29
H3-3B
LARS2
ORC5
PSMA1
SECISBP2L
B3GAT3
ETV3
CISD2
TRIAP1
C8orf76
CDK12
SETDB1
PYGB
H3C8
MZF1
RPL6
WDR11
NOL7
PTPN11
IMPDH2
THOC5
ETS1
AMOTL1
PKMYT1
IFRD2
DNAJC11
RAD52
FBXO31
HEXIM1
TAF12
TPK1
TAMM41
CEP135
AMACR
YAE1
RPL22
ZNF721
PIGG
TBRG4
GTF3C5
ZC3H10
MRPL44
FBXW2
RPS13
SLC30A6
BORCS7
C1orf74
RNF166
HSPA8
CTU2
ABHD10
GTF2H3
EIF2B1
RPS28
NDUFA7
MRPL38
COMMD4
SEC11A
MSL2
DUSP12
OPA1
PHAX
HSPA9
SMIM10L1
PRH1-TAS2R14
PRH1
NCBP3
NUP42
MRPL33
MTAP
H2BC13
H2AC13
NSFL1C
SLC3A2
PTBP1
ING4
TTC1
PRMT5
SMG5
PINX1
MTMR2
CBWD5
CBWD3
KLHL12
PEX12
LTBR
E4F1
UTP25
TGFA
TMEM11
SSNA1
ANAPC2
MRM3
GLOD4
ARHGEF12
TMEM248
POLR2M
MUL1
STMP1
SLC35E2B
LONP2
ABCC11
GATAD1
ALDH1A3
MRPS15
RPL24
NOTCH2
PRCC
SRSF2
MFSD11
LRCH4
FBXO24
ZNF668
ZNF646
RMDN2
MAPK8IP3
KRR1
COX20
ATN1
PEMT
CWC25
RAD23A
RPL35
ARPC5L
ZZEF1
CYB5D2
CHD1L
H4C2
ZNF253
FUS
SRPRA
VAMP1
GPX1
SLTM
PRRC2C
PEX3
ADAT2
ABRAXAS2
MRPL48
POR
NFYC
POLR2C
TOMM40
GGCX
MVB12A
MANBAL
MKRN2
U2SURP
RFC2
DIDO1
LSM8
GID8
COA7
DCBLD2
PPP1R8
EEF1A1
AP5S1
TAGLN2
WFDC3
DNTTIP1
DPH7
SAP30
GPN2
TMBIM6
B9D1
MEOX2
TIGD6
HMGXB3
DDX46
RANBP6
NOC3L
RPL7A
MED22
RBM12
CPNE1
INKA2
DDX20
ISG20
ROBO3
RDH5
CT45A7
CT45A6
CT45A3
S100A3
TAF1B
DENR
RARS1
TRAPPC4
RPS25
NDUFA9
AKAP3
STK40
H3C4
H2AC4
NSMCE1
FBXL18
METAP2
M6PR
KLRG1
RPL17-C18orf32
RPL17
GAPDH
PSMB7
UTP23
CLNS1A
NEK4
IER3
EPHA3
CAPS
ERLIN2
POLR3F
DZANK1
RAD50
POMP
CANX
GABPB2
H2BC17
H2AC17
NEURL2
CTSA
TIMM50
PNPLA6
STAT1
MFAP3
FAM114A2
YKT6
ECI1
DTD2
COIL
AP2A1
PRDX2
SMARCA4
HRCT1
TOMM22
SPNS1
MICOS13
HSD11B1L
EIF4A3
C6orf89
HDAC4
ZBTB37
SGTA
ZNF575
ALKBH3
UBE2Q1
SURF6
DNAJB1
SRRM2
TECR
PPIL3
NIF3L1
BTG1
AXDND1
ANKRD18A
PRELID3B
ZSCAN22
SHPK
CTNS
FRG1
ZNF484
MRFAP1
METTL2A
USP19
WDR55
LEO1
GPATCH4
ALX1
PARL
SUMF1
DNM2
MEPCE
ZCWPW1
VTA1
NMBR
C2CD5
MDM4
RPSA
ALG10
TXNDC15
AP2B1
MRRF
WWP2
HNRNPH2
GLA
NOLC1
ZNF335
TRMO
IPO4
GPN3
FAM216A
ABL2
MYOF
SNAPC5
VPS29
RAD9B
HM13
AGMO
POLE3
C9orf43
STEAP1B
SLMAP
SCN11A
WDR48
NTMT1
BORCS5
MLF2
TRIM46
KRTCAP2
CLPB
DNAJC14
RAD23B
DDX19B
PSMG1
NSUN6
KMT2D
SRSF1
RNF34
C1QTNF3
HSP90AB1
TTC14
PRPF6
SLC35A3
FBXW9
PRKCE
ZNF408
ARHGAP1
CITED2
ANKRD18B
PIGC
PSRC1
UBQLN4
LAMTOR2
FAM168A
CSTF1
AURKA
RABL2B
SHISA4
TNPO2
TRDMT1
EIF3E
PSMD8
ZNF770
DNAH14
AAAS
FITM2
POLR3D
DDX23
KMT5B
CLTC
FEM1A
COPS7B
CDCA3
TMEM41A
TIMM21
FBXO15
BRWD1
UBC
NCBP2AS2
NCBP2
ABCF2-H2BE1
ABCF2
ATAD2
PPP5D1
CALM3
TSNAXIP1
RANBP10
UNK
GSPT1
SOD2
WTAP
TMEM199
POLDIP2
WDR53
FBXO45
SPATC1L
CALM1
GATB
FOXJ3
RBL1
LRP6
CYCS
MRTO4
EMC1
ORMDL3
TCF3