ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX20230574 | Ishikawa
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◣ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

CTNNB1
KMT5B
LRP6
MTF2
CLTC
LAMP1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
CALM1
BRWD1
PKM
PPP5D1
CALM3
RCL1
MRM3
GLOD4
CCNL1
DDIT4
NOTCH2
RASEF
KPNB1
PHIP
ATAD2
ZC3H6
TOB2
CCDC88A
SOD2
WTAP
ATP8B1
SSNA1
ANAPC2
MRPL21
IGHMBP2
KLLN
PTEN
TMEM41A
NCBP2AS2
NCBP2
STX18
FOXJ3
ATG14
TRIAP1
ZFAND2A
TBL3
SLC44A2
MXD4
SPNS1
ZKSCAN2
PNRC1
KMT2D
TCF3
DDX23
CALM2
CDKL3
UBE2B
MRTO4
EMC1
DIP2A
HEXIM2
MOB3A
IZUMO4
HMGCL
HEXA
IST1
WASHC2C
PIK3R3
TMEM222
WDR53
FBXO45
COPS7B
POMZP3
TRIP12
FBXO36
GRHL2
CKS2
SRP68
VPS37A
CNOT7
NUP214
UBE2D3
MCM7
AP4M1
MAPKAPK5
SPRED1
SEC13
NAGPA
WASHC2A
EIF2D
COPS8
MTERF4
TMEM199
POLDIP2
CCDC77
KDM5A
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
ADPGK
TSN
MTMR2
ZNF212
ADNP
NOC4L
DDX51
GPAM
SRSF11
LRRC40
DOHH
IPO11
ATXN2L
CFAP410
TOMM22
CYP51A1
NSFL1C
DOLPP1
GTF3C5
POLR2J3
MAIP1
DNAJC11
TIMM22
GTF2H3
EIF2B1
UBQLN1
PEPD
RPS28
NDUFA7
ZNF721
PIGG
PHAX
STX16
RCOR1
GRHL1
DCP1A
TXN2
CUL4A
PCID2
UBC
TAF5
SNRNP70
ARFGAP2
IP6K2
ARHGEF12
COQ7
HAGH
FAHD1
DUS2
DDX28
ZFPL1
CDCA5
ENDOV
AJUBA
NMNAT1
LZIC
SLC9A1
PSMD3
CHCHD1
PINX1
NDUFA10
RFXANK
BORCS8-MEF2B
BORCS8
SPATC1L
C8orf33
MRPL58
SMAGP
RBM42
PRKACA
PEX3
ADAT2
HOXD8
CLCN7
CYCS
CLN8
AURKAIP1
CANT1
DNAJA3
ZSWIM7
TTC19
SPRYD3
CRBN
TAS1R1
NOL9
PELP1
FUS
TARBP2
SPTLC1
SMN2
SMN1
MRPS15
ACOX3
TRMT44
NDUFV1
ADPRS
ARF4
GTF3C2
MRPS35
DYRK1B
GHITM
MRPL39
PBLD
HNRNPH3
DCAF8
TMEM39A
ERCC1
NDUFS7
COMMD1
CCT4
ATG7
COQ9
CIAPIN1
TRMT61B
USP30
PHF5A
ACO2
ECSIT
MCCC1
NOL10
EIF4A3
FRA10AC1
NEURL2
CTSA
NDUFS3
KBTBD4
CASC3
ZC3H3
TSPYL2
FAF1
ABCF2-H2BE1
ABCF2
UBN1
GLYR1
SMPD4
MZT2B
KAT8
SESN3
NXF1
TUBGCP6
FAM207A
ZNRD2
TSR3
GNPTG
U2AF1L5
U2AF1
MANF
ADK
ATRIP
THOC1
SLC7A6OS
PRMT7
TAOK2
VPS33A
BRIX1
MRPL4
RANBP2
LTBR
TCF12
TOP3B
DNAJB12
KCTD5
TBRG4
CENPBD1
ZER1
TIMM21
FBXO15
TMEM203
NDOR1
SUPV3L1
AP5Z1
DIABLO
LAD1
PARL
RTF2
ZGPAT
ARFRP1
SUMF1
PALB2
DCTN5
TMEM217
TBC1D22B
PTPN4
OPA1
OAZ1
MCU
TSR1
SGSM2
PMPCA
ENTR1
DPY19L4
ACAD9
TOP2B
NABP2
GTF2I
WDR25
WARS1
HSP90AB1
CTDP1
HMGB1
USPL1
RERE
SHBG
FXR2
SPRYD4
NBPF1
CNP
NFATC4
DCAF10
TET3
COG2
PI4K2A
MCAT
CBWD5
CBWD3
PNRC2
SULT2B1
RAD23A
MIDEAS
LONP1
CATSPERD
BRAP
ACAD10
PA2G4
UBE3B
KCTD10
MRPL37
CYB5RL
WDR18
NDUFAB1
ZBTB45
PACC1
ACSL3
SKA3
MRPL57
PARPBP
NUP37
RLF
JMJD1C
DCP1B
PRTG
OAZ3
HPS4
SRRD
TIMM50
C5orf51
MRPS11
MRPL46
PRKCZ
SMG5
CCDC43
MRPL49
FAU
DSTYK
TSR2
TOP3A
SMCR8
PLEKHM3
MFN2
HPS5
GTF2H1
FANCD2
GCN1
PSTK
PSMD12
EIF4A2
WASHC5
NSMCE2
POLR3D
PDCD4
WAPL
ALG1
METTL9
NLK
TRIP4
HNRNPAB
SRSF1
AMOTL2
WDR43
RPL22
GNB2
UQCRC1
PSPH
CCT6A
DDX1
TBCB
POLR2I
MARCHF8
TMEM128
CMTR1
DENR
LMTK2
REXO1
PSME3
MRPS7
GGA3
ERI1
VAC14
DDX41
GXYLT1
VDAC2
FAM227B
DTWD1
AARS2
RPAIN
NUP88
RAD54L2
GMFB
EEF2
LTO1
C19orf48
GATAD2A
DCAF1
CCNL2
ATP5MF-PTCD1
ATP5MF
PSMF1
RUVBL1
RNPS1
EEFSEC
NFKBIZ
ZFAT
H2AX
YIPF6
TMEM11
SRPRA
HNRNPL
GARS1
CDK4
YPEL2
CABIN1
PEX26
EXOSC8
RRP7A
TNKS2
GABPB1
TFRC
ANKFY1
HSP90B1
HBS1L
MON2
ANKRD36C
TULP3
PPIL4
MVD
MED9
CACTIN
NUP160
TNKS
CCT2
MAML3
FAM149B1
ECD
SMIM12
IARS1
ARNTL
TJAP1
FAM156A
FAM156B
USP42
TTC4
PKN2
QRICH1
TMEM104
NAT9
ANAPC11
ALYREF
FAM133B
RPUSD4
FAM118B
MICU2
ATXN2
TMEM242
SP2
HAUS5
HTRA2
FAM76B
CEP57
ZNF839
NUP85
SSU72
TAF3
COA6
COQ10A
STK19
DXO
RPL6
RAB5IF
PTPN11
CDKN2AIPNL
CFAP43
RPAP3
ZFAND5
EXOSC3
COMMD2
OSCAR
NDUFA3
PCBP2
VCPKMT
MACROD1
HIF1AN
USP14
HOXD9
CHMP1B
IDI1
RPLP1
PPT1
UNK
TENT5C
ZNF384
SECISBP2
EDF1
KAT5
RAD50
TMEM9
H3-3B
THRAP3
SFSWAP
MRPL55
THUMPD1
LRRC59
VIRMA
SLC35B1
XPO4
EIF3F
DDX46
RBSN
EIF1
MYLIP
TCP1
MRPL18
MALL
CHUK
RASGEF1B
SENP5
KCTD9
CDCA2
ELF1
WBP4
CDK5RAP1
SARAF
TWNK
MRPL43
NAGK
POLG
DDX19A
SRSF5
ZCCHC4
SDHB
ARF3
HERPUD1
MST1
EFTUD2
CCDC103
MAEA
KDM4B
DBI
C2orf76
VCP
MKS1
MRPL20
ZNF518A
MZT2A
SPOUT1
CCDC86
NCL
GADD45G
LUC7L
B4GALT7
CBWD6
IFRD2
RPL13
RNASEH1
TBCCD1
DNAJB11
WDR6
GEMIN7
UBB
C12orf73
PCCB
SH3YL1
ACP1
HUS1
EIF2B5
PDCD6IP
ZNF595
ZNF718
ZW10
RCOR3
DNAJC9
DUSP5
CUTC
COX15
TAX1BP3
EMC6
ATP6V0D1
NUP188
DOLK
REXO4
TIGAR
DPP9
VAMP1
SETD1A
PPP1CC
CEP192
SNAPC3
MRPL48
ASH2L
MARK3
TMED2
FAM161B
COQ6
NABP1
MEF2A
ATAD3B
C16orf91
LRRC37A3
MCOLN1
PPAN-P2RY11
PPAN
HGS
ARL16
CAPN10
NBN
HEBP2
MTHFD2
ALKBH3
RPS16
SNAP47
JMJD4
IDH3B
DRG2
UBIAD1
UBAP2
GNE
ATAD3A
GIPC1
WDHD1
SOCS4
WFDC3
DNTTIP1
CRYBG2
TRA2B
RNASEH2C
DHDDS
C5orf15
UCP2
MRPL12
MED4
IL4I1
NUP62
ATF5
SURF6
POLE3
C9orf43
LANCL2
TAF1B
CACUL1
ASNS
EIF5
UHMK1
GMPPB
PPIA
EXT1
ASH1L
ZDHHC16
EXOSC1
RAB4B
EEF1AKMT2
ID1
ATP5MPL
MYH7B
GSS
SLC25A38
AFTPH
KANSL2
KDM3B
XPNPEP3
ST13
CRCP
ULK2
SART1
ING5
YEATS4
NRL
DCAF11
XBP1
ZC3H10
SNAPC5
HEMK1
RAD9A
POR
BRMS1
RCE1
ZSCAN22
SEC11A
RANBP3
ZNF740
CSAD
MRRF
PSMD8
PSMC5
FTSJ3
ZNF8
ZCCHC3
ANKRD36
SLC25A26
ATP9B
CCDC130
ASB6
AMDHD2
PGBD4
EMC7
KCTD11
UMPS
RARS2
ORC3
ZDHHC5
CAND1
SKIV2L
NELFE
SDE2
TIMM44
FLVCR1
H2BC21
H2AC20
H2AC21
LRRC57
HAUS2
CS
ZNF292
TUSC2
CPSF1
TMSB10
GID4
ATPAF2
STOML2
DCPS
MIS12
DERL2
DPH7
BLOC1S1
RFX3
MSTO1
TMEM127
CIAO1
ANXA7
SUGP1
MAU2
MIS18A
SOX12
INO80
DGLUCY
RPS6KA5
RWDD1
PDE4DIP
GSTO2
LLGL2
GTF2H2
EXO5
TFB2M
CNST
ZNF594
ETNK1
KPTN
FBXW2
UBE2V2
MAF1
PFKM
SENP1
VCL
RSRC1
MPHOSPH10
MCEE
EXOC2
NUS1
MAN2C1
TIMM17A
ZBTB9
SMARCA5
ARAP2
TTC8
SEC31A
KMT2A
SC5D
TIGD6
HMGXB3
SLC25A37
TBC1D22A
MAN1A2
CDKN2D
SLC24A1
SMIM13
TMPO
SLC35A3
LRRC47
ATG101
LDHA
SLC39A7
RXRB
ZNF574
EMC8
COX4I1
NOP2
RPS6KB2
APTX
DNAJA1
RMND5A
RNF103-CHMP3
TAGLN2
KDM4A
FASTK
ATP6V1C1
TMEM116
ERP29
TEPSIN
NDUFAF8
ZFAND4
DPH1
CDK11B
CDK11A
C16orf70
FAM204A
PNPT1
SRP9
EDRF1
ALDH3A2
NEK2
STARD3
TRUB1
GOSR2
SLC35E3
SNRNP200
TRDMT1
MDN1
MIGA2
RNF166
CTU2
LZTR1
ID2
ZC3H15
FDFT1
ABAT
MOB4
C18orf32
DGCR8
GPN2
PCNA
SCN11A
WDR48
USP20
C9orf78
CZIB
TAF6
CNPY4
CHSY1
BOD1L1
EPRS1
UBE2S
PET117
KAT14
IGSF9
RPS15
SUMO2
YWHAQ
VPS53
TSPAN10
NPLOC4
EDC4
SYCE2
MDM2
STYXL1
MDH2
GGCX
FBXO22
PDRG1
UBE2D2
RPL3
FAM160A2
PSMD2
PPP4R3A
LSM2
CIC
UBOX5
FASTKD5
ZNF770
C2orf69
GTF2IRD2
GTF2IRD2B
MCCC2
C6orf132
WDR11
SAR1B
SFR1
RMDN3
TRIP11
PAK4
NUDT15
TEDC1
SUMF2
PTPDC1
SCAF1
TEFM
CCDC124
TVP23B
VPS11
MTRR
FASTKD3
TMEM256
COA8
BAG5
USP15
TUBGCP3
PRPF19
DNAJC25-GNG10
DNAJC25
NOP56
ASAH1
TFDP2
CIAO3
TMEM183A
NOC3L
DDX42
CCDC47
GPATCH1
SNRNP25
POLR3K
PARP2
ARMH3
FEM1A
BRPF1
PGAP2
RMI1
HNRNPK
GMCL1
CNOT1
NOM1
CLIC4
ATF4
RRBP1
SDHAF2
CPSF7
SNF8
DIP2B
DYNLL1
TVP23C
SRSF6
CIAO2B
CES2
ARFGEF2
HERC3
PYURF
PIGY
KLF10
MED23
SLC33A1
ZBTB17
EIF3A
PLK2
GRAMD2B
BUD13
EHD4
TRMT2A
RANBP1
C5orf24
HDAC6
BRF2
MDM4
FEM1C
PCOTH
MIPEP
POLR2J
PCIF1
POLR2C
C6orf226
ANKHD1-EIF4EBP3
ANKHD1
ELF2
FBXL12
LRCH4
FBXO24
MAP2K1
PFN2
SF3B2
LENG8
FBXO28
ARID2
MAK16
KRT80
ZNF500
DOK7
ERMARD
WDR61
AGPS
ETV5
SLC25A16
NDUFS6
RABGAP1
CBWD1
NDUFA11
VMAC
TMEM254