ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9730734 | THP-1
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◣ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

UBC
WDR74
H4C14
H4C15
H1-2
H2BC21
H2AC20
H2AC21
NFYC
H3C2
CITED4
PABPC4
H1-3
RCC1
H1-4
H2BC5
AZU1
GPX1
H2BC11
H2AC11
EGR1
H4C11
H2BC17
H2AC17
H2BC12
H2AC12
H3C15
H3C14
H4C12
PARP2
CAP1
H2AC19
H2AC18
H4C9
H2BC18
H3C13
H1-5
H2AC16
SLC3A2
ST3GAL3
H4C6
H3C8
ZMPSTE24
EEF1A1
H2BC4
H2AC6
CEBPA
H2BC8
H2AC8
PTMA
TASL
H4C3
H1-10
ACTB
H2BC13
H2AC13
H3C10
ZFP36
H4C1
H3C1
H3C7
H2BC9
EXO5
FTL
PNP
H3C3
H2BC6
SIRT4
PRRC2A
ZNFX1
EIF4A2
TIMP3
TXNIP
ZFP69
DALRD3
NDUFAF3
H4C5
ANKRD13D
GBA
MCL1
POLDIP3
TRAF7
ID1
H3-2
EIF4A1
ZFP69B
ELANE
CCDC200
H2BC14
H2AC14
MS4A6A
H3C4
H2BC7
H2AC7
ZFP36L2
SRGN
ZBTB37
ACTG1
CA2
ZBTB4
POLR2A
TMSB4X
H3C11
CITED2
H1-0
ZEB2
PLAC8
IRF2BP2
JUNB
CBX3
HNRNPA2B1
RPS27
H4C8
ZNF438
MS4A7
RPL10A
TUBB4B
BAHCC1
LOC730098
PPIA
CALR
PPP1R10
MRPS18B
H4C4
FAM200B
SRSF2
MFSD11
PPT1
IRF8
MFSD2A
HSPA8
HMGN2
PABPC1
H3-3B
TNFSF9
H2AX
PFN1
FUS
SRSF3
ZNF684
TRIT1
MTF2
MBNL1
ADAMTS1
CHI3L1
S100A13
CHTOP
YBX1
SLC38A2
H2BC15
H2AC15
IBA57
MYC
H4C13
DNAJB4
DDX39B
HSP90AB1
RPL12
LRSAM1
MAT2A
SVBP
ERMAP
GAPDH
RPS2
JMJD1C
CFD
BMP8B
RPLP0
CFL1
HMGB2
NEMP2
RPL27A
RPL10
HNRNPH1
NKIRAS1
RPL15
HEXIM2
RPS20
HYI
KLF7
FASN
TCTEX1D1
IMMT
SLC39A10
LYST
TEX30
H3C12
H2BC3
DHRS9
C6orf226
DESI2
BAZ1A
RPL11
RPL5
TOMM20
GLUL
CSKMT
C11orf98
BRWD1
ATF4
RNF220
ID2
RPS6
DDIT3
FOS
CTPS1
RPLP1
SLC39A4
MEF2D
TUBB
HSPB1
RBL1
CIRBP
SP9
ZBTB45
RPS8
RPL13A
HMGA1
YWHAG
HSPA5
TRIM25
H2AZ1
H2BS1
AURKAIP1
EIF1
RUNX1
ZNF143
CDC20
PDLIM2
FBXO28
SDCBP
ISOC2
NUDT7
H2BU1
H2AW
LIN9
HEYL
EFCAB2
MACROH2A1
RIMS3
PCIF1
DNLZ
ZNF92
TPCN1
IQCD
PTBP1
PPIF
DPY19L4
CBX5
HNRNPA1
GTF2A1
RPS3
RNPS1
INO80D
RNF149
KLLN
PLEKHM3
PTEN
SRSF7
H2AC4
RPL41
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
RPS16
FAM43A
ABTB1
TMSB10
FOXD1
AGPAT2
INTS6
RLF
RAD54L2
SLC16A3
RPL24
TMBIM4
MEF2C
PEX6
FAM133B
GMNN
LMNB1
NDUFS7
ZFAND5
NOTCH1
SCRIB
ATXN7L2
PGBD2
COA6
P4HB
COQ8A
CCDC30
ZMYND12
PPCS
CTBS
RPL30
RPL8
MAN2C1
ZNF124
TTI2
NDUFB3
FAM126B
HNRNPAB
OARD1
NFYA
TAF1D
C11orf54
P2RY2
LAIR1
EIF2S2
KATNBL1
CHD2
SUZ12
RPL22L1
C17orf75
GLO1
TP53BP2
ZFAND3
RPL7L1
RASSF5
DDX60L
NCL
GSTA4
NSUN4
KCNQ4
C19orf48
MTR
LDHA
COQ2
RFX3
VGLL4
TUBB6
LAT2
TUBA1B
TBC1D5
JUND
CYC1
IQCG
TMA16
DDX59
MRPL1
RPL35A
COMMD3-BMI1
COMMD3
CCAR2
TOR1AIP1
RBBP5
USP4
RRM2
VASP
ZSCAN31
CUL7
TCF3
KAT7
FAF1
DMAP1
YWHAH
S100A4
EEF2
LUC7L2
TRAM2
ELOVL1
MYCL
ERLIN2
EXOSC3
PKNOX1
REXO5
ERI2
PMAIP1
EIF2D
C12orf57
ZNF670
SLC9A8
RPL3
KCTD18
RGL2
ZNF93
SLC9A1
DDX1
MLLT11
CDC42SE1
SMARCD2
FOXP1
GPR160
MRPL21
IGHMBP2
GTF2IRD2B
CYTH2
RPS19
RPL13
SLC25A28
DCAF12
ZNF517
UBE2I
SPI1
SERP1
EIF2A
RPL36AL
MGAT2
BAZ1B
PEX3
ADAT2
RPL17-C18orf32
RPL17
COX7A2
LDHB
DEF6
ZNF804A
ZER1
NARF
TNPO1
DENND4B
SUPT3H
PTGER4
DLX4
FOXJ3
RPLP2
ANKRD40
PAIP1
IL17RA
NLRP3
TMPO
GADD45B
PPIH
MS4A6E
UBB
GABPB2
UCP2
AMACR
H6PD
EGLN1
ZNF22
AP1S3
CBWD5
CBWD3
CBWD6
DDX5
CEP95
NOXA1
PDLIM7
HAUS4
CYP7B1
RCOR3
NLE1
TNRC6B
KRCC1
NSD1
EIF5
RXRA
FUT4
TCIRG1
KMT5B
ATAD2
DCAF10
KDM4A
DNAJC9
EXOSC6
NUCB2
ZNF787
WDFY1
H3-3A
REEP3
SNUPN
ANXA4
UBE2R2
SINHCAF
FRY
DSTYK
ELOC
RPSA
ASH2L
SMG8
DHX9
PXT1
KCTD20
ZNF341
NSMAF
NRROS
PPP1R27
ZC3H6
GTF2H2
ARL8B
MARCHF7
NUDT4B
NUDT4
RNPEP
SPN
SRCAP
LOC730183
ARF6
SEPHS2
FKBP5
RCBTB2
SMAP2
LAPTM5
SRSF1
HNRNPU
ZNF7
SRF
LZTS2
ARHGEF2
CCDC85B
GPANK1
CSNK2B
CUL9
DPY19L3
B3GNT2
CYCS
RPL7A
MED22
PPIL1
VRK2
COX20
RACK1
TUSC1
CPEB2
PTER
MRC2
AZIN1
TCOF1
TUT1
DEGS1
RING1
SLC25A6
D2HGDH
APBB1IP
FES
RWDD1
SLX1B
SLX1A
BOLA2B
BOLA2
BOLA2-SMG1P6
OAZ1
PUF60
NPM1
CAPRIN1
NLRX1
C9orf64
APOC2
ZFPL1
CDCA5
NRL
DCAF11
C1orf53
DHRS12
GMEB1
IRF5
NUF2
RPS23
ATP6AP1L
ATIC
SCAF8
ECHDC2
RAB3GAP1
THSD7A
RPS7
BRF2
RPL31
USF1
RPS15A
CC2D1B
BTBD1
CYBC1
LCP1
RPL22
SRP9
GTF3C3
TSPAN10
NPLOC4
CRADD
NFKBIA
CLSPN
S100A11
KDELR1
NCAM2
NBN
ZNF76
GEMIN7
STIL
DOCK8
C8orf82
ELF2
EMC4
HPS6
HES6
ERMARD
EPM2A
SLAIN2
FBXW5
C8G
TRA2B
USE1
SYCE2
GNAI2
OIP5
NUSAP1
ELAC1
TPM4
CD68
SMG5
NOCT
NUCKS1
TPM3
COTL1
ZNF200
MARCHF6
RPL36
SLC35E2B
PYROXD1
VPS28
SLC39A1
CREB3L4
SLC35D1
METTL21A
TOB2
ZWILCH
RPL4
TCTA
RHOA
ANP32B
ZNF217
PRTN3
AARS2
PSMD8
S100A6
ANKRD45
PSEN1
PPIE
FAAP20
TMCO1
SLC22A16
ZNF691
PCNA
ACYP2
HNRNPA3
CLK1
GPCPD1
SMC4
IFT80
P2RY6
MAIP1
LEMD2
RBM25
DMTF1
SLC20A1
HYLS1
UAP1
PLEKHF2
SREBF1
CAPS2
RABGGTB
HNF4G
MSN
VAV3
AHCTF1
VCP
SRSF6
PIGW
MYO19
CHMP6
TOLLIP
ZNF107
BRIX1
ZFAT
VPS29
RAD9B
GOLPH3
RDX
TIMM13
CMTR1
RTEL1
MYH9
PIM3
TYMSOS
TYMS
UNKL
TWIST1
CCR1
DRG2
CHAMP1
DCP1A
STAT1
CLPTM1L
MTO1
CREB1
CCNL1
ENDOV
GTF2IRD2
C6orf89
TPT1
THUMPD3
CHMP4A
IPP
RNASEH2B
H4C2
SATB1
GSDMD
B4GALT7
SELENOT
PRDM10
R3HCC1
KEAP1
SAYSD1
PDE7A
SMURF2
PNMA1
CEBPD
SNAPC3
DNM1L
CAAP1
TRAPPC4
RPS25
CHEK1
DCXR
ZBTB25
ZBTB1
RILP
ZAR1
TOP3B
LSG1
PYGO2
LOC101928120
ENSA
ANP32E
BRPF3
GFI1
LYN
ATP5MF-PTCD1
ATP5MF
GABPB1
XPOT
SLC39A13
ADGRL1
PRDX1
POLR2M
SLTM
GRB2
TRIM27
E2F3
MUC1
CNTNAP3
GOLGA3
PARP1
DPYSL2
RPL36A-HNRNPH2
RPL36A
BTK
DGAT1
TMED2
MCM3
PTBP3
XKR5
HMGB1
DNAJC25-GNG10
DNAJC25
TBC1D13
LSM8
RNF115
POLR3C
COMMD10
LIG3
MYB
MRPS35
SDE2
TMED5
CCDC18
MAN1A2
CYREN
HYOU1
DUSP2
OSBPL1A
TCF12
TAGLN2
FEM1B
DNAH14
LRRC8C
REEP4
IRAK3
ARIH2
ARFGEF1
FOSL1
SNAP47
JMJD4
VPS26C
PPP1R15B
CLK3
ANKRD36
PDSS2
PPP1R35
LAT
RPL29
TUBGCP3
CNTRL
C5
EIF4G1
TEP1
PTPN6
RANBP6
CYP4V2
PEX7
SMG9
ADGRE5
THBD
PHTF1
RABL6
STX18
FDPS
KLHL20
RPL28
RBM8A
GON4L
RANBP9
ATPAF1
IRX3
SYT11
RMDN3
PHC3
AIG1
USP22
SCMH1
BCAT1
S100A9
NKX6-3
MAD2L1BP
TRRAP
USPL1
BICD2
ATP6V0B
ATG10
RNASE2
CHMP7
SNF8
KITLG
DNPH1
INPP5E
SNX19
ADAM15
PRPF3
ZBED4
TRERF1
PLAUR
POLR2J3
TRIM65
CD58
ZNF669
GCLM
H2BC10
TKTL1
TEX28
MOB3A
IZUMO4
WDR70
NRDC
FAM168B
PARP8
PRRG4
ANKRD17
ABHD16A
LCP2
HSP90B1
NFE2L2
RITA1
DDX54
KNL1
PRR12
MYL12A
DBR1
BLOC1S6
NAXE
CATSPERE
TOR4A
DDX23
IFRD2
LAMP1
CTNNB1
CLTC
FEM1A
TBL3
COPS7B
CALR3
C19orf44
CDCA3
TMEM41A
TIMM21
FBXO15
NCBP2AS2
NCBP2
ABCF2-H2BE1
ABCF2
NOTCH2
PPP5D1
CALM3
TSNAXIP1
RANBP10
PPRC1
UNK
PAFAH2
GSPT1
TMEM11
SOD2
WTAP
TMEM199
POLDIP2
WDR53
FBXO45
TMEM222
SPATC1L
CALM1
GATB
CLPB
OPA1
SSNA1
ANAPC2
CCDC88A
TSN
TOMM22
SPNS1
CALM2
SEC13
MRM3
LRP6
GLOD4
ZSCAN22
MRTO4
EMC1
ORMDL3
COPS8
KBTBD7
NDUFS3
KBTBD4
NMNAT1
LZIC
TIMM22
CCDC77
STX16
NUP214
SMN2
SMN1
BTRC
CNOT1
PEMT
TMEM115
KMT2D
MED23
DOHH
CFAP410
TRIP4
C16orf91
POMZP3
ZNF337
KPNB1
SCAF1
SYMPK
CHMP4B
ST3GAL2
CTDP1
MTERF4
BOD1
AP2S1
IST1
WASHC2C
TSSC4
PSMD3
PRCC
FOXA3
CDKL3
AHCYL2
PNKD
SNX17
EIF2B4
AAMP
ING3
TSC1
GFI1B
HTRA2
PA2G4
GTF2H3
EIF2B1
ADPGK
PHIP
TCEA2
FRA10AC1
CKS2
HEXA
ZNF212
WASHC2A
SMPD3
PEX26
CLEC16A
NAGPA
THRAP3
KCTD9
CDCA2
MRPL24
DDIT4
KBTBD6
UBE2B
USP30
ZFAND2A
KDM5A