ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9730735 | THP-1
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◣ SRX9730735: THP-1

◢ CDK9: STRING

WDR74
PABPC4
UBC
H1-3
H4C6
NFYC
H1-2
SLC3A2
H4C3
H4C11
ZNFX1
EGR1
SRSF3
H4C12
H2BC18
H3C13
H4C14
ZMPSTE24
H4C15
YBX1
HSP90AB1
MAT2A
KLF7
CITED4
H3-2
DALRD3
NDUFAF3
EIF4A2
H2BC21
H2AC20
H2AC21
EEF1A1
RPL10
H3C2
EIF1
H1-10
ZFP69
TUBA1B
RPLP0
EXO5
ID1
SRSF7
SIRT4
EIF4A1
PPIA
H4C1
H3C1
HNRNPAB
RPL10A
H2BC8
H2AC8
CTPS1
FUS
H2AX
MCL1
TRIT1
ZBTB37
RPL12
LRSAM1
TXNIP
JUNB
SLC39A10
H1-4
H2BC5
SLC16A3
PABPC1
ZNF124
H2BC6
FASN
CCDC30
ZMYND12
PPCS
CFD
H3C3
TRAF7
ID2
H2BC12
H2AC12
TUBB4B
PPP1R10
MRPS18B
H4C9
GPX1
CSKMT
C11orf98
DDX39B
PNP
DDX5
CEP95
TIMP3
RPS27
H2BC11
H2AC11
SEPHS2
ATF4
HSPB1
HNRNPH1
NASP
P4HB
MS4A7
CALR
SRSF2
MFSD11
CA2
H3C7
H2BC9
H4C8
H3-3B
TNFSF9
EEF2
LAPTM5
S100A4
ZBTB4
POLR2A
FTL
RPL13A
PTMA
RPS3
RCC1
CBX3
HNRNPA2B1
NFKBIA
PARP2
PRRC2A
NCL
HMGB2
H2AZ1
CEBPA
TKTL1
TEX28
REEP4
PPIF
FOS
H3C8
ZNF669
RPL5
TUBB
DNAJB4
H4C4
ZFP36
C19orf48
SMAP2
ATAD2
RPLP1
RPS20
GLUL
TRIM27
PFN1
H1-0
C6orf62
ZNF670
CIRBP
INO80D
POLDIP3
RRM2
RPS8
TAF1D
C11orf54
H2BC3
IL4I1
NUP62
ATF5
RBM14-RBM4
RBM14
TMSB4X
PCBP2
PCIF1
H2BC4
H2AC6
ZNF93
CAP1
CITED2
ZC3H10
RPL41
GRB2
H3C15
H3C14
H2AC19
H2AC18
CDC20
CFL1
ST3GAL3
ACTG1
RBMX
MBNL1
MYH9
MFSD2A
RPS6
H3C11
SLC38A2
PPT1
VPS52
RPS18
VPS29
RAD9B
H2BC15
H2AC15
EIF5
HSPA8
HMGN2
TASL
S100A13
CHTOP
COQ8A
GBA
SVBP
ERMAP
YWHAH
LUC7L2
AHCTF1
INTS6
ACTN1
LMNB1
MTO1
IBA57
H4C13
H2BS1
H2BU1
H2AW
RNF220
H4C5
RPS23
ATP6AP1L
NSD2
TUBA1C
TUSC1
ANKRD13D
RPS2
C6orf226
MARCHF7
PPIE
CYCS
ZNF438
RPS16
VASP
HEXIM2
GDI2
LDHA
USP4
CBX5
HNRNPA1
NPM1
FAM200B
TRA2B
HYLS1
JMJD1C
CTBS
PRKCD
SDE2
GLO1
E2F3
SRSF6
FBXO28
PDLIM7
SELENOT
LMNA
PTBP1
PEX6
SRGN
TRIM28
H2BC17
H2AC17
CLTA
PTGER4
DPYSL2
RLF
C12orf57
HSPA5
DDX59
RPL3
ZNF92
ZNF684
GTF2A1
TP53BP2
DENND4B
OARD1
NFYA
GAPDH
LAT2
TPM3
IRF1
TEX30
DESI2
SRP9
ADAMTS1
H1-5
H2AC16
SPI1
HMGB1
ZNF143
ANP32E
H3C12
SZT2
MED8
CYBA
BZW1
NSMAF
H2BC13
H2AC13
AGPAT2
H3C10
ARF1
H2AC4
ELOC
COX18
AZIN1
VPS28
FOSL1
SRSF5
SF1
ZSCAN31
IRF8
TRIM11
LOC730098
DDX3X
MEF2D
KIF5B
FOXP1
SMURF2
CCNL1
GPANK1
CSNK2B
TBCC
BICRAL
RPS29
NLRX1
ZNF691
PDCD6
H3C4
CALM2
DDX19B
AARS1
DCAF12
MATR3
RPL7A
MED22
TMBIM4
MACROH2A1
PMAIP1
RPL17-C18orf32
RPL17
RPS10-NUDT3
RPS10
TARDBP
EIF4G2
NDUFV3
MIA3
TAOK1
PKMYT1
FAM133B
NCOA5
CLSPN
SLFN11
RFX3
ZNF274
GABPB2
CGAS
MLLT11
CDC42SE1
ZWILCH
RPL4
ENO1
ZFAND3
TFRC
TMEM69
GPBP1L1
DGUOK
MSN
SCMH1
ATP6V0B
RNASEK
ANP32B
ADPGK
RPS19
TOMM20
ZNF672
UHRF2
RPLP2
RELT
RPL30
ABHD16A
METTL21A
ZC3H6
TPT1
NUCKS1
RPL32
RPS3A
SLC20A1
CC2D1B
HNRNPA3
LAIR1
RPS15A
TCTEX1D1
SLX1B
SLX1A
BOLA2B
BOLA2
CAPRIN1
PBLD
HNRNPH3
OAZ1
MCM7
AP4M1
LDHB
GMNN
FUCA2
RING1
ZNF253
UBE2D3
NLRP3
RPL23A
BAZ1A
HNRNPUL1
SGK3
CYC1
IMP3
NKIRAS1
RPL15
EDF1
ARF6
ZFP69B
KHDC4
BAG6
APOM
JUND
UNKL
OXLD1
CCDC137
GADD45B
CLK1
ZC3H4
ZNF451
SLC22A16
UBA52
HSPA9
ZCCHC3
CHST11
ARHGAP35
P2RY2
MAN2C1
SART1
NACA
ZNF273
UBE2L3
S100A11
TPM4
MYBL2
LEMD2
XKR9
LACTB2
UBE2I
RPL8
H3-3A
FOXD1
ZFAND5
TMPO
RABEP2
TOB2
UCHL5
RO60
GTF2IRD2
MAPK14
CCSAP
GPR160
PCLAF
RBM39
CEBPG
MDM4
NBN
NARF
RPS12
SREBF1
LAT
ATXN2L
RPL27A
ERLIN2
STIL
UQCC3
LBHD1
MYC
CHI3L1
RPL21
FBXO4
NEMP2
SP9
FBXO5
REXO5
ERI2
PAK2
CCDC200
H4C2
TOR4A
SLC25A3
COQ2
GOLPH3
EFCAB2
NRL
PCK2
HSP90AA1
NSRP1
TPCN1
IQCD
RCC2
ACTB
RPS27A
CLHC1
ZBED4
CFLAR
CTNNB1
ILF3
CYBC1
QSER1
DNAJC1
MYLIP
RPSA
PYM1
H2BC7
H2AC7
PRR12
STMN1
NCOR1
PIGL
NUDT18
TCTA
RHOA
RBM12B
PDCD6IP
SREK1
RUNX1
TMED5
CCDC18
MRC2
HSPE1-MOB4
HSPE1
HSPD1
PPP1CC
UBAP2L
C1orf43
HENMT1
HNF4G
NOP58
RACK1
MYL6
HNRNPU
FSCN1
MCRIP2
FADD
PDE7A
RC3H1
SLC25A5
MYL12A
RNPEP
H2BC14
H2AC14
BOLA2-SMG1P6
TAGLN2
PKNOX1
RPL26
PPIL1
PSEN1
RPS26
SRCAP
LOC730183
PUF60
TRIM13
BVES
TRAPPC4
RPS25
SLTM
SUPT3H
DUSP28
ANKMY1
NUDT4B
NUDT4
AP1S3
RHOB
NFX1
NRDC
CELF2
SLC1A5
ACTR2
EZH2
ZNF131
TRAM2
RMI1
HNRNPK
PPP1R15B
RXRA
KAT7
DDX50
DHPS
KPNA1
RIPK1
DHX9
RPL7L1
ARHGEF2
YWHAG
ARF4
RBM25
STARD7
RPL23
ELANE
EIF2S2
NUDCD2
HMMR
NRROS
GMEB1
GRK2
POLG
HNRNPL
MRPL12
TSPAN10
NPLOC4
DNAJB1
SACM1L
EIF3A
RPL36AL
MGAT2
CEP192
TPI1
ADGRE5
ZNF200
GNAI2
TBRG4
RABGGTB
IPP
UCK2
IRAK3
RPL18A
SERP1
EIF2A
C9orf85
ABHD17B
SLC25A6
IL17RA
DNPH1
MS4A6A
MOB4
C16orf72
LYN
PKM
JTB
SDCBP
YTHDF3
RAC1
HNRNPDL
ENOPH1
KRCC1
HSPA4
SMIM19
SLC20A2
ZNF280D
ANXA5
CKS2
GABPB1
KLLN
PTEN
TCERG1
TRIM25
KLF10
DOCK8
ZNF700
ATXN7L3
WDR4
SNRPD1
RPS15
UGP2
IMMT
STT3B
ZBTB25
ZBTB1
RGS16
PTPN7
SPHK2
RPL18
NSF
C9orf64
ALDOA
RBM8A
U2AF1L5
U2AF1
TOE1
MUTYH
LSM8
PAIP1
NNT
KCNQ4
NSUN4
RNASEH2B
AVEN
DDX60L
TOMM6
SFT2D3
YWHAZ
ETFRF1
CFAP94
IDI1
HDGF
WDR37
CMC1
BCOR
PRCC
CANX
C2orf69
DDX39A
ZNF695
DYNC1H1
HMGA1
ELOB
LAMTOR1
PPP1R15A
RPL22
C12orf65
WDR82
NOCT
ABTB1
TRIM52
GATAD1
RIC8A
BET1L
RNF135
SPPL2A
FAM43A
MAZ
PUM1
CSE1L
COX7A2
TYMSOS
TYMS
TGFBRAP1
BRPF3
CENPC
PLK4
HYI
LOC100287896
LIPT2
CPT2
SMIM27
ATL3
TOPORS
CUL7
SNRPG
SQSTM1
ERV3-1-ZNF117
ERV3-1
TAPBP
SRSF1
DDIT3
MTCH1
ZKSCAN2
TUBGCP3
SUMO2
MOB1A
CARD9
ACOT2
PRDX1
MFSD14B
PPIH
RPL28
RBBP6
SF3B3
COG4
SCAF11
UBA2
ANAPC7
N4BP2
MSH6
SINHCAF
DIP2A
NUDT15
DDX17
NDUFB1
CPSF2
AFG3L2
PPDPF
SMARCB1
LRIF1
PSMB8
ANKRD45
MTF2
EIF4B
COPS3
HMGN1
PFKL
THSD7A
GMIP
MAD2L1BP
GTPBP2
FAF1
PSMD8
TMEM203
NDOR1
SFPQ
P3H1
USPL1
ANKRD54
EIF3L
HNRNPA0
GGNBP2
CREBZF
PI4KB
ODC1
AZU1
SLC9A1
SELENOH
VDAC2
STAT1
WDFY1
MKNK2
CDC37L1
CYTH2
BNIP2
PCF11
STXBP3
TBL2
XPOT
MORF4L1
KATNBL1
ACBD6
CD164
BMP8B
C17orf75
GTF2IRD2B
ADAT1
CCT7
SKIL
LRRC8D
SLC38A10
CLK4
RAB5IF
YWHAQ
ZNF623
SEC16A
C9orf163
YRDC
C1orf122
CCNG1
IDH2
BMS1
BUB3
VCP
DNAJC9
POLR2M
WARS2
SYK
ORAI3
B3GNT2
BRWD1
METTL23
JMJD6
ERBIN
ZNF518A
ATP13A1
RBM12
CPNE1
CHKA
PTER
MTHFD2
RPL13
LIN9
GTPBP4
PNN
C1orf53
RPS9
CORO7-PAM16
CORO7
FAM161B
COQ6
BACH1
ZNF717
PYCR2
RPN1
MBD4
IFT122
LIG3
WDR5
RAB7A
MTIF3
GTSE1
PLEKHF2
TMEM59
TCEANC2
IPO9
MDM2
VARS1
ILKAP
ZNF320
LCP1
SNX19
ATP5F1A
YWHAB
HNRNPF
GNAI3
PARP1
VPS36
BLM
PHTF1
ALDH2
CYREN
TTI2
GTF3C6
RASSF7
LMNTD2
RPL36
E4F1
LSM5
AVL9
BRD2
CREB1
CHMP5
BAG1
CHCHD2
KCTD18
USP22
ECHDC2
CARD19
RPL37A
CCNA2
CHMP4A
KPNA2
CDK12
RPL36A-HNRNPH2
RPL36A
BTK
PLAC8
POLR2J3
HNRNPC
ZNF22
DUSP3
MSRA
WDPCP
MDH1
C5orf24
NFU1
NDUFA6
FLI1
EIF4G1
RPS11
KIFC1
KDM3B
PHC3
COMMD3-BMI1
COMMD3
RDX
TBX18
RPTOR
CSNK1A1
SAP18
ATP6V0C
SHCBP1
ZYX
FAM131B
MRPL48
ADSS2
ATP5MC2
MMAA
ZNF24
RAF1
TOR1AIP1
NUP54
SON
GART
ATP2A2
POGLUT3
ZNF66
FOXJ3
SLC39A7
RXRB
MRPL15
HECTD2
ELOVL1
UHRF1BP1
AHNAK
MSRB2
DCUN1D1
BANP
RPL38
PPP2CA
HLA-E
INPP5D
RCOR3
MRPS25
KMT2E
LRR1
TMEM267
B2M
MAP10
NABP1
ACSL3
ACAP2
SIGMAR1
TRIB3
LARP1B
ZNF121
CPEB2
ETNK1
RPL31
EIF3B
MAPK1IP1L
CEP63