ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX148964 | P493-6
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◣ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

WDR74
MTRNR2L8
MTRNR2L2
MTRNR2L9
RGPD2
RGPD1
HSD17B4
UNC93B1
TNKS1BP1
SCML1
ZMIZ2
MTRNR2L6
H1-4
H4C14
H4C15
ZBTB4
POLR2A
PRKAG1
SPATC1L
H4C11
H4C12
H2BC11
H2AC11
TRAPPC4
RPS25
CCDC66
CD74
DDX23
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
MTF2
IFRD2
LAMP1
HEXIM2
CCNL1
CTNNB1
CLTC
ZC3H6
FEM1A
TBL3
DSTYK
COPS7B
CALR3
C19orf44
EIF2D
CDCA3
STX18
TMEM41A
TIMM21
FBXO15
NCBP2AS2
NCBP2
ABCF2-H2BE1
ABCF2
MRPL21
IGHMBP2
BRWD1
DCP1A
ATAD2
TSNAXIP1
RANBP10
KMT5B
PPP5D1
CALM3
PPRC1
UBC
NOTCH2
UNK
GSPT1
PAFAH2
TMEM11
POLR2J3
SOD2
WDR53
FBXO45
TMEM199
POLDIP2
WTAP
TMEM222
GATB
FOXJ3
CLPB
RBL1
CALM1
OPA1
SSNA1
ANAPC2
NDUFS7
SPNS1
TOMM22
CCDC88A
TSN
MRM3
GLOD4
SEC13
CYCS
ZSCAN22
MRTO4
EMC1
LRP6
AURKAIP1
ORMDL3
TCF3
CALM2
RPL8
COPS8
KBTBD7
TIMM22
UBB
CCDC77
NDUFS3
KBTBD4
NMNAT1
LZIC
NUP214
STX16
BTRC
SMN2
SMN1
CNOT1
PEMT
TMEM115
DOHH
CFAP410
C16orf91
KMT2D
TRIP4
ZNF337
MED23
POMZP3
SCAF1
SYMPK
CHMP4B
ST3GAL2
CTDP1
KPNB1
BOD1
AP2S1
MTERF4
RPS3
WASHC2C
TSSC4
PSMD3
PRCC
IST1
FOXA3
PEX3
ADAT2
RPS20
AHCYL2
PNKD
CDKL3
SNX17
EIF2B4
AAMP
ING3
PA2G4
GTF2H3
EIF2B1
ADPGK
TCEA2
HTRA2
HMGB1
CKS2
GSTA4
HEXA
ZNF212
WASHC2A
FRA10AC1
SMPD3
PEX26
CLEC16A
NAGPA
THRAP3
KCTD9
CDCA2
PHIP
NUF2
MRPL24
KBTBD6
RPL22
ZFAND2A
KDM5A
NUDCD1
TSC1
GFI1B
UBE2B
TTC13
ARV1
DDIT4
TRIAP1
USP30
PPP1R12B
ZNF721
PIGG
MED15
UBE2D3
MCM7
AP4M1
ZCCHC4
RPS6KB2
NXF1
RPS28
NDUFA7
ATG14
OSCAR
NDUFA3
ATP5MF-PTCD1
ATP5MF
ZKSCAN2
ZBTB45
MAF1
RPL18A
FAM207A
PKM
CRTC2
SCNM1
LYSMD1
USPL1
INVS
ERP44
IPO11
TMEM127
CIAO1
KCTD5
MICOS13
HSD11B1L
OAZ3
TOB2
H2BC21
H2AC20
MAD2L1BP
SLC9A1
C8orf33
SCRIB
RPIA
PANK4
H2AC21
ZNF444
GTPBP2
NPRL2
CYB561D2
NOP14
GRK4
CDC25C
GPAM
PPP1R12C
DNAJC11
RPS26
WDPCP
MDH1
DUS2
DDX28
MAIP1
DIP2A
TMTC3
CEP290
TRAPPC3
ZW10
CYP51A1
TNFAIP1
IFT20
CCAR2
PHB
EIF4A2
SLC35B4
FAM53C
ZNF384
RANGAP1
ATXN2L
MAPKAPK5
BRIX1
UBR2
ALKBH3
C1orf159
MXD4
SRSF11
SMG5
RBM42
LRRC29
NUP153
ZNF56
FUS
UBQLN1
NME1
TBRG4
PGBD4
EMC7
MRPS15
KAT7
CUL4A
RLF
PSMF1
PINX1
MFN2
HMBOX1
C19orf53
PSMD11
COMMD1
FBXW11
MRPS35
BOD1L1
DNAJA3
UBE2Q1
SLC25A19
DCAKD
ADNP
UBQLN4
LAMTOR2
HMGCL
CCT4
KDM4B
GHITM
BANP
TAF5
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
ZFYVE1
NSFL1C
GID4
ATPAF2
CCDC146
TOR1AIP1
SPRYD4
PBLD
HNRNPH3
TRIP12
FBXO36
LRRC40
PCID2
STK25
INTS9
DPP9
MMACHC
RIC8B
LUC7L
AP2M1
VPS37A
CNOT7
NOC4L
DDX51
NMT1
TTC33
DOLPP1
ENDOV
CIC
SPTLC1
DCAF10
SP2
MRPL20
SLC33A1
ZNF420
ZGPAT
ARFRP1
PIGU
ZFYVE19
DNAJC17
ARHGEF12
AHCTF1
ACOX3
NTAN1
COMMD9
UCHL5
RO60
TEPSIN
NDUFAF8
MRPL58
CSRNP2
HNRNPAB
RCL1
IDH3B
TCF12
EIF3F
RBM6
BIRC5
DNAJB12
RPL29
LETM1
STAU1
ABRAXAS2
MTMR2
SECISBP2
LONP1
CATSPERD
TFPT
PRPF31
RALBP1
TRMT44
SUPV3L1
SMARCAL1
ARF4
HSP90AB1
GFUS
SNAPC3
COQ9
CIAPIN1
SART1
ZFPL1
CDCA5
UBL7
DDX49
COPE
GTF2I
PHF13
GTF3C5
DDX1
MRPS16
FDPS
JOSD2
RPL12
LRSAM1
PIK3R3
HSP90B1
GTF2H4
COG2
RCOR1
ZNF749
SNRNP70
ARHGAP9
ELOC
RAB5C
H2AX
CTU1
TSC2
NTHL1
WASHC5
NSMCE2
DCAF8
ZC3H10
TOP3B
MRPL39
BOLA1
GABPB1
DCAF1
DESI2
SSBP1
TRAF7
PARL
WAPL
MARS1
TMEM59
TCEANC2
RPS7
NDUFV1
CAND1
IP6K2
CBWD5
U2AF1L5
U2AF1
TRAK2
STRADB
CHCHD3
RWDD1
CRBN
PHF12
SOX6
C11orf58
B3GALNT2
CBWD3
METTL25
CCDC59
VCPIP1
C8orf44-SGK3
TTC4
COX7C
PNRC1
SLC7A6OS
PRMT7
PSMD2
MCU
CANT1
ADPRS
WDR87
SIPA1L3
TRMT61B
SF3A3
KLLN
THYN1
ACAD8
SLC3A2
SLC24A1
PABPC1
SKIV2L
NELFE
PRKACA
BICD2
IPPK
USP48
GUSB
DPY19L4
RPS19
SMIM13
BRF2
SIRT2
NFKBIB
METTL9
POLG
PLEKHM3
SSR3
ZNF500
TARBP2
FAM149B1
ECD
ZNF148
PSMD4
TIMM13
NDUFB5
MRPL47
THOC6
HCFC1R1
FAM228B
CCDC90B
TMEM242
RPS16
MANF
RUVBL1
UBE3B
KCTD10
NOLC1
GFM1
COQ7
TRUB1
ATF4
PTEN
TMEM217
TBC1D22B
SERBP1
SESN1
RPLP1
CMTR1
VIRMA
UBA52
NKIRAS1
ASXL1
DNM1L
TACO1
COA6
POLR2E
NLK
RFXANK
BORCS8-MEF2B
BORCS8
ZC3H3
PCBP2
CDKN2AIPNL
EIF4A1
CFAP20
HAGH
FAHD1
COPS7A
RPLP0
NDUFAB1
LARS1
CAPN10
TFRC
BMS1
HPS4
NEURL2
CTSA
CACTIN
BUB3
ZER1
KAT8
SPRED1
WBP2
H2BC18
ATRIP
RCOR3
BUB1B
ACTR1A
PARK7
CLP1
TMEM230
SF3B2
XRRA1
SPCS2
PHB2
REXO1
SRP68
FAF1
B4GALT7
USP15
PTDSS2
CBWD6
KMT2B
SLC4A2
SLX1B
SLX1A
BOLA2B
BOLA2
WDR25
WARS1
RNASEH2C
PALB2
DCTN5
CWC25
ZNF518A
RPL15
HIF1AN
VCP
MRPS11
MRPL46
RANBP2
H3C13
ZNF225
GTF2H2C
GTF2H2C_2
TIGD6
HMGXB3
SNRPD3
GUCD1
TEFM
WRNIP1
DFFA
XPOT
RPP30
ZFAT
SUMF1
MDM4
FBXO46
C5orf51
PDE4DIP
NOL10
CFL1
CCP110
CHCHD6
ZFYVE28
SEC11C
ZNF189
MRPL50
UBN1
GLYR1
CEP350
CCDC150
EIF2S2
POLR3D
PHAX
RPL23A
SPHK2
FBXO28
RAD23A
CDK8
C12orf43
RPL3
CFAP99
WDR4
CDK5
PTBP1
SELENOH
FAM156A
SEC61A1
SRRD
TATDN3
NSL1
ZNF451
NCDN
KIAA0319L
SUGP1
MAU2
DGAT1
FAM156B
ZNF2
VPS33A
PEPD
TMEM39A
SMIM12
CCDC124
RAB1A
ZNF527
TMEM69
PANK3
SDE2
HIRIP3
MRPL3
C19orf48
TOP2B
RPL18
TOP3A
SMCR8
LRCH4
FBXO24
PPIA
SFSWAP
SRSF2
MFSD11
RTF2
CNPY2
CLDND1
IPO7
CNIH4
KPTN
COMMD2
CAPN15
RTTN
RASEF
AP5Z1
ZNF805
CCDC86
SNAP47
RPL6
H3C15
H3C14
SRSF1
JMJD4
UBAC1
AKIRIN2
ABT1
TSFM
RTEL1
FANCD2
EXOSC4
CNOT4
SPRYD3
CASC3
DDX46
ZNF133
CDK5RAP1
MRPL48
SRPRA
RPS3A
WNK1
TIMM50
ATP5PO
TOR1A
MRPS23
ZNF335
ZNF595
DYRK1B
RAD54L2
GATAD2A
USP42
USP35
KCTD21
BOLA2-SMG1P6
PKN2
MAGOH
SEL1L
RBSN
SURF6
L3MBTL2
TBC1D22A
TMEM258
FEN1
SCAMP3
CCNC
CCNI
FAM133B
HBS1L
KDM4A
RPLP2
FASTKD1
RPTOR
DUS3L
PSME3
GPBP1L1
EIF2B5
AARS2
GPANK1
CSNK2B
SERP1
EIF2A
SERPINI1
PDCD10
TAS1R1
NOL9
MTR
IARS1
SLMAP
PPP6C
HNRNPL
TUBGCP3
PDCD4
FBXW2
RERE
DRG2
REXO4
CIAO3
MON2
TMEM160
DYNC1I2
EIF1
EIF5
SUFU
MRPL44
PPIL4
RAB5IF
MRPL4
C12orf73
VIPAS39
AHSA1
TFEB
NUS1
CLCN7
MXI1
DNM2
EFTUD2
CCDC103
TMEM186
PMM2
ECSIT
APTX
UFSP2
TBCB
POLR2I
FAM227B
DTWD1
LTO1
AJUBA
VPS50
HEPACAM2
GARS1
CHCHD1
PCM1
ZC3H11A
EIF3C
BDP1
ACAD9
TVP23B
TBCCD1
PSMD8
VPS4B
TMEM43
CHCHD4
PDE6D
EIF3CL
TUBGCP6
SRP9
ZNF554
EIF3D
MAEA
MIA3
H2AC19
H2AC18
NDUFS2
WDR11
CALR
INTS1
RPGRIP1L
FTO
FBXO48
APLF
ZSWIM9
LIG1
AKAP8
SUPT4H1
POR
SH2B1
RFX1
SNRPD1
WDR43
DHX33
NBPF1
STOML2
UMPS
ATP5MPL
ZNF567
RAD52
MRPL37
CYB5RL
NFYC
GTF2H2
ERLIN2
RBM28
ZNF419
ZNRD2
MYLIP
FAM222A
THOC1
ARFGAP2
FAM204A
MRPL55
ATG7
MAN2C1
SEPTIN9
ARNTL
TXN2
FAM185A
MTMR9
SSU72
POLR3F
DZANK1
GPR108
TRMT2A
RANBP1
EXO5
ZSWIM7
TTC19
NCOA3
TSR1
SGSM2
LANCL2
HUS1
PMPCA
ENTR1
PRDX1
PPP1R8
VAPA
SESN3
PNPLA6
CHMP1B
EIF5B
POLE3
C9orf43
FAM193A
LRRC59
UBR4
VDAC2
TUFM
DIABLO
MRPL11
CCNG2
TFB2M
CNST
WDR18
YWHAG
ADK
DNAJA1
YIPF2
TIMM29
ABCC5
GOLGA1
ZNF436
SNX27
EXOSC3
MRPL12
SCAMP4
ADAT3
DDX41
ATR
TMEM248
METTL26
ZMPSTE24
GTF3C3
LMAN2
TMEM245
NDUFA10
MIS18A
ZNF17
DDX19A
ZNF235
SNAPIN
CCNL2
NUP54
CDK5RAP2
STK17A
STYXL1
MDH2
ILF3
THOC3
EIF4A3
NFXL1
MARCHF5
CPEB3
SRSF6
RPS15
ABCB8
UBIAD1
PPT1
HSPE1-MOB4
HSPE1
HSPD1
IPO13
TXNDC9
SAR1B
INTS12
GSTCD
SAP30BP
RECQL5
PELP1
ATP5F1B
ADSS2
UBAP2
LZTR1
KHDC4
NOM1
NOL7
ASH1L
TMED9
SNRNP200
SLC44A2
ZSCAN32
ZNF174
RNMT
FAM210A
NIP7
COG8
RPUSD4
FAM118B
LRRC37A3
PARP2
ARMH3
VKORC1
TAF15
TSPYL2
RMDN3
POLR2J
RETSAT
ELMOD3