ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10144543 | Kasumi-1
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◣ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

GSDMD
CPXM1
LGR6
MEF2C
TMC8
NME1-NME2
NME1
TBKBP1
CYB561
NKX6-3
NUF2
VAV1
DPY19L4
BMS1
NIBAN3
RPS6KA1
FRA10AC1
SMG8
MRPS18C
HELQ
ACY3
ARHGAP25
DCAF10
MYO1G
TACO1
TOR1AIP1
RNF220
SIPA1
NDUFS3
KBTBD4
NBEAL2
NFE2L2
SLC24A1
INTS14
GTF3C3
ZNF595
IL16
NDUFS7
POTEH
CCDC149
CRH
RXRA
SHANK3
NSA2
GFM2
LST1
INTS12
GSTCD
CLEC11A
NEDD9
FAM207A
GTF2H2C
GTF2H2
EXOSC4
CPSF1
GSN
CACNG4
STX16
C17orf75
PRRG2
NOSIP
B4GALT7
ADA2
GTF2H2C_2
SNRPB
MAF1
ARPC3
ARHGDIB
ZNF565
GRPEL2
TOP3B
CCM2
DUS1L
WDR36
SH3BP2
FOXI1
POTEJ
MITD1
RASGRF2
TEFM
CCAR2
KLHL20
WDR11
CNPY3
CDK5RAP1
IPO4
NR1H2
CD33
SKIV2L
NELFE
UNC13D
SSBP1
SLC39A3
ADAM10
FGF7
MMRN1
NFKB2
PPIP5K2
GIN1
ERLIN2
ANKRD40
RMDN1
ZNF165
WDR55
IL17RE
CA12
ANAPC5
ARAP1
ACBD5
ARSG
SLC16A6
GNG2
STXBP5
P2RX1
SIRPB2
TUT1
SNUPN
STAP1
CNPY1
AURKAIP1
CCL4L2
WNT10B
MAP1LC3B2
GIMAP1-GIMAP5
GIMAP1
RAD54L2
UTP3
SLC33A1
EDC4
MNAT1
WDR74
TSPAN10
NPLOC4
THUMPD3
ANKRD13D
S100A9
MPO
DR1
ZNF221
KBTBD2
ARHGAP30
AP3S2
DMAP1
PROSER1
NHLRC3
ITGA4
SEC14L5
CD300A
TRIP4
IFIT3
SLC16A3
SH3TC1
MTMR9
UBXN8
LAPTM5
ARHGAP4
LAMP1
TATDN3
NSL1
MRPL40
HIRA
NUP54
MRPL1
TRAF3IP3
PHB2
GALK2
COPS2
TCTEX1D4
BTBD19
PRLH
MRPL21
IGHMBP2
HIF1AN
SLC44A1
ANPEP
NDUFC2-KCTD14
NDUFC2
PPP1R15B
TRIB1
LILRA2
GTF2H3
EIF2B1
HHEX
NPEPL1
CLTC
SEPTIN9
CHCHD2
ELMO1
TXLNB
RASAL3
PSMF1
ALG10B
CYREN
PSD4
SELENOH
C12orf57
ZNF408
ARHGAP1
BDNF
PTGR1
COQ3
ZBTB45
SIRT4
TRMT6
MCM8
MYL12A
TMBIM4
FERMT3
ZNF391
SPATC1
CHRM3
TBC1D10C
TBC1D19
TAF12
COX16
TMEM154
RPL29
AGK
VPS25
PDLIM2
CRACR2A
ARAP3
IFITM2
PSTPIP1
DHRS7C
ARHGAP28
NEK6
LSG1
PLCXD2
FLOT1
NOXA1
IFTAP
HPCAL1
POTEM
GHRL
TMA16
ZNF570
ZNF569
RNF166
RGS14
TSSC4
SDE2
OSM
CCDC77
KDM5A
TUBGCP3
C10orf88
MRPL38
TMEM222
STYK1
CABP1
CCDC170
SELENBP1
PPIL3
NIF3L1
SEC22B
AIF1
CSF2RA
ZER1
CASC3
ING4
KCNAB2
PIK3CG
SCNM1
LYSMD1
GOLGA3
EIF1AD
BANF1
RGL2
INPP5D
KLHL6
NIP7
COG8
GBA
ARL11
ZNF384
ANXA2R
ARL6IP4
LIMD2
C1QTNF1
MRPL39
PARG
CSRNP1
UNC5B
GMFG
CFAP410
CALR
PUF60
MCMBP
NFKBID
CDYL
RNASE2
HCST
CSF3R
PIGV
MS4A3
AKNA
AOAH
TRPM6
DCP1A
MDM4
ZMPSTE24
NFKBIL1
ATP6V1G2
ZDHHC6
VTI1A
CCNC
TNFSF8
MAGEF1
PEX12
DUSP6
TSPOAP1
MRPL58
NR1H3
ACP2
RAC2
MTRNR2L8
MAK16
FKBP1A
PPP1R35
TM7SF3
ETV6
ARHGEF18
SLC26A11
SGSH
APBB1IP
OPA1
IPPK
RAB18
IL18RAP
STX18
CSNK1G2
NCF1
SF3A3
MRPL16
CCDC114
MTPN
LUZP6
ULK4
C3orf86
HNRNPA1L2
DGKZ
PPCDC
C12orf71
ALG10
TRAF3IP2
AVIL
B3GALT5
SIGLEC15
OPRL1
RGS19
NOP16
HIGD2A
TTC26
PLEKHO1
GABPB1
TES
TGIF2
COPS7B
H4C11
USP15
REXO4
INTS1
TMEM101
ITGB3BP
EFCAB7
KRR1
HNRNPF
SEH1L
PLEK
ADRA1A
CAMP
POTEI
ABT1
EIF3F
H4C15
H4C14
AGAP2
SPN
PAFAH2
RPS7
LTN1
TUT7
OGFOD2
AMPD2
ORC4
MBD5
RGL4
KMT2A
DIXDC1
ZNF787
GTPBP3
FBN2
BPI
RMND1
ARMT1
TNFAIP8L2
BST1
TPM3
VPS13B
RTEL1
FAM227B
DTWD1
SDHAF2
CPSF7
WDFY3
STING1
NOD2
S100P
JRK
STAG1
TACC1
COPS4
CHCHD5
GPSM3
TNFSF14
EIF2D
SEC13
RPS19
RFXANK
BORCS8
HUS1
CLK3
YJU2
SIGIRR
FCER1G
NCF2
STAT6
IL1RN
TMIGD2
MTF2
URM1
GBE1
DNAJA2
IGFBP7
ZNF827
TMEM71
LYL1
CBFA2T3
LAIR1
SH3TC2
PROX2
BHLHE40
CFLAR
ATP2B4
KMT5B
PEX2
GALNT3
DEF6
CXCL8
DSTYK
RPL37
TATDN1
NDUFB9
GIMAP6
FSCN3
CALML4
PEX3
ADAT2
ATP2C1
RNF149
RTTN
PPP1R16B
NOS3
RAP2C
ARRB1
CPT2
MXD3
ZNF197
MED23
GABPA
ATP5PF
YME1L1
IRF5
LXN
CYBC1
RSL24D1
PRKD2
RXFP1
GNAI2
PLEC
SNRPD1
WDR45B
KMT5A
NDUFB3
FAM126B
JUP
RFFL
RBBP5
CFAP298-TCP10L
CFAP298
EIF3K
SASH3
NLRP3
CPA3
TBPL1
DUSP3
CFAP97D1
LGALS12
CENPC
LBR
LY6E
CD93
TAF13
TMEM123
DENND4B
ZMYND8
MED10
H4C12
MTRNR2L2
CUL7
FOXN2
C9orf16
SNX32
RPS20
POLDIP3
WASF2
TCF12
TFRC
PRKAG1
ZNF385A
DIAPH1
RAB44
RUFY3
ACTR3
MED18
VTA1
NMBR
C1RL
XPC
LSM3
PDE4D
DDX23
IFRD2
HEXIM2
CCNL1
CTNNB1
ZC3H6
FEM1A
CALR3
C19orf44
NOTCH2NLC
TMEM41A
TBL3
TIMM21
FBXO15
BRWD1
ABCF2
UBC
NCBP2AS2
NCBP2
CALCOCO1
UCKL1
ATAD2
TSNAXIP1
RANBP10
PPRC1
PPP5D1
CALM3
UNK
GSPT1
TMEM199
POLDIP2
POLR2J3
SOD2
NOTCH2NLA
WTAP
WDR53
FBXO45
SPATC1L
CALM1
GATB
FOXJ3
CLPB
SSNA1
ANAPC2
RBL1
TSN
CCDC88A
TOMM22
SPNS1
CALM2
LRP6
MRM3
GLOD4
ZSCAN22
CYCS
ORMDL3
NOTCH2
MRTO4
EMC1
TCF3
RPL8
COPS8
TIMM22
KBTBD7
NMNAT1
LZIC
UBB
BTRC
NUP214
SMN2
SMN1
CNOT1
TMEM115
PEMT
C16orf91
DOHH
ST3GAL2
KMT2D
POMZP3
CHMP4B
SYMPK
SCAF1
KPNB1
CTDP1
ZNF337
BOD1
RPS3
GSTA4
AP2S1
PSMD3
IST1
AMD1
PRCC
AHCYL2
WASHC2C
FOXA3
PNKD
AAMP
SNX17
EIF2B4
ING3
TCEA2
HTRA2
TSC1
GFI1B
PA2G4
CDKL3
HMGB1
ADPGK
CKS2
ZNF212
PHIP
CLEC16A
SMPD3
THRAP3
WASHC2A
HEXA
PEX26
NAGPA
KCTD9
CDCA2
KBTBD6
MRPL24
RPL22
ZFAND2A
TTC13
DDIT4
USP30
NUDCD1
ZCCHC4
PPP1R12B
MED15
HIKESHI
UBE2B
NOTCH2NLB
ZKSCAN2
TRIAP1
RPL18A
H2BC21
H2AC20
ZNF721
PIGG
NXF1
UBE2D3
ATP5MF-PTCD1
ATP5MF
RPS6KB2
PKM
MCM7
AP4M1
RPS28
NDUFA7
ATG14
OSCAR
NDUFA3
INVS
ERP44
CRTC2
TOB2
H2AC21
USPL1
MAD2L1BP
MICOS13
HSD11B1L
TMEM127
CIAO1
OAZ3
MRPL9
PNRC2
IPO11
SCRIB
KCTD5
RPIA
CDC25C
PANK4
C8orf33
GTPBP2
NPRL2
CYB561D2
ZNF444
NOP14
GRK4
WDPCP
MDH1
TMTC3
CEP290
RPS26
PPP1R12C
FAM53C
DNAJC11
TRAPPC3
GPAM
DIP2A
TNFAIP1
IFT20
RANGAP1
DUS2
DDX28
EIF4A2
PHB
ZW10
CYP51A1
BRIX1
SLC35B4
MAPKAPK5
SMG5
UBR2
MXD4
ATXN2L
C1orf159
SRSF11
MRPS15
RBM42
TMEM208
LRRC29
ZNF56
FUS
NUP153
UBQLN1
PGBD4
EMC7
CUL4A
TBRG4
ALKBH3
KAT7
RLF
BOD1L1
HMBOX1
PSMD11
COMMD1
PINX1
MRPS35
KDM4B
MFN2
DNAJA3
UBE2Q1
SLC25A19
UBQLN4
LAMTOR2
CCT4
C19orf53
NSFL1C
ADNP
HMGCL
DPP8
DCAKD
GHITM
BANP
CCDC146
ZFYVE1
TAF5
FBXW11
GID4
ATPAF2
PBLD
HNRNPH3
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
TRIP12
FBXO36
DPP9
PCID2
MMACHC
CCDC163
AP2M1
RIC8B
STK25
LRRC40
SPRYD4
INTS9
LUC7L
VPS37A
CNOT7
NMT1
NOC4L
DDX51
TTC33
MRPL20
UCHL5
RO60
ENDOV
DOLPP1
AHCTF1
ZNF420
CIC
ZFYVE19
DNAJC17
PIGU
ARHGEF12
HNRNPAB
ZGPAT
ARFRP1
TEPSIN
NDUFAF8
NTAN1
SP2
RBM6
CSRNP2
SPTLC1
COMMD9
LETM1
ZC3H10
STAU1
ACOX3
H1-4
IDH3B
DNAJB12
RCL1
SMARCAL1
ABRAXAS2
TFPT
PRPF31
MTMR2
RALBP1
BIRC5
LONP1
CATSPERD
SECISBP2
TRMT44
GFUS
UBL7
PHF13
SNAPC3
HSP90AB1
SUPV3L1
ARF4
GTF2H4
GTF2I
TSC2
NTHL1
GTF3C5
ZFPL1
CDCA5
FDPS
COQ9
CIAPIN1
DDX49
COPE
ARHGAP9
JOSD2
H2AX
DDX1
COG2
HSP90B1
CTU1
ZNF749
ELOC
SNRNP70
SART1
PIK3R3
RCOR1
MRPS16
DCAF8
RPL12
LRSAM1
TRAF7
MARS1
RAB5C
TMEM59
BOLA1
DCAF1
WASHC5
NSMCE2
DESI2
RWDD1
PARL
NDUFV1
WAPL
CAND1
PHF12
CHCHD3
TRAK2
STRADB
B3GALNT2
IP6K2
SOX6
C11orf58
CRBN
VCPIP1
C8orf44-SGK3
COX7C
SLC7A6OS
PRMT7
CCDC59
TTC4
WDR87
SIPA1L3
ADPRS
MCU
PNRC1
SLC3A2
PSMD2
TRMT61B
CANT1
POLG
USP48
PRKACA
PABPC1
BRF2
ATF4
TMEM242
METTL9
THYN1
ACAD8
PLEKHM3
BICD2
FAM228B
SIRT2
NFKBIB
KLLN
SMIM13
PSMD4
SSR3
H2BC18
THOC6
HCFC1R1
H3C13
MANF
FAM149B1
ECD
PTEN
UBE3B
ZNF148
TIMM13
GFM1
NDUFB5
MRPL47
CCDC90B
ZNF500
RCOR3
RPS16
VIRMA
TARBP2
RPLP1
TMEM217
TBC1D22B
NKIRAS1
COQ7
ASXL1
TRUB1
RUVBL1
COA6
COPS7A
NOLC1
LARS1
UBA52
CMTR1
SESN1
EIF4A1
DNM1L
SERBP1
CDKN2AIPNL
HAGH
FAHD1
POLR2E
PCBP2
CFAP20
SPRED1
ZC3H3
CAPN10
RPLP0
CACTIN
HPS4
CLP1
ACTR1A
XRRA1
SPCS2