ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX1637467 | MOLT-4
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◣ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

CALCOCO1
IFRD2
BTRC
TCEA2
MMACHC
CCDC163
TMEM115
CLPB
TSNAXIP1
RANBP10
SMPD3
AP2S1
FEM1A
GTF2H4
UCKL1
PRCC
CHMP4B
WDPCP
MDH1
CALR3
C19orf44
NUDCD1
GSPT1
ZFYVE1
MRPL24
ST3GAL2
PKIG
HIKESHI
PEMT
PNKD
AAMP
PHB
SCNM1
LYSMD1
MICOS13
HSD11B1L
AHCYL2
BANP
KBTBD6
CRTC2
C1orf159
PPRC1
ALDH1A2
SLC4A2
CDK5
ATP2C1
ZNF444
PI16
RBL1
KBTBD7
PAFAH2
MAD2L1BP
GTPBP2
PPP1R16B
BOD1
PHF12
TMTC3
CEP290
WDR74
STAU2
HMBOX1
INTS9
HHIP
ING3
VCPIP1
C8orf44-SGK3
IQGAP2
DCLK3
KMT2B
CALR
DSTYK
PANK4
SLC35B4
SHQ1
INVS
ERP44
BNIP3L
PPP1R12C
NPRL2
CYB561D2
BIRC5
CCDC114
UNK
SCAF1
FBXL19
KCTD9
CDCA2
PPP1R12B
WNK1
GATB
CHCHD2
DEGS1
NTAN1
GFUS
POLDIP3
SSBP1
TSSC4
UBR2
LARS1
C3orf86
FBXW11
KRTAP16-1
VPS50
HEPACAM2
MND1
CCDC146
ZNF331
FBXO48
APLF
FASTKD1
PSMF1
TIMM21
FBXO15
CAPN15
ZNF225
COPS4
ACTR1A
SUFU
ZFYVE19
DNAJC17
NBEAL2
CTU1
UBQLN4
LAMTOR2
LST1
ZNF335
VIPAS39
AHSA1
TGM6
RPS7
H2AZ2
CCP110
FAM222A
RANGAP1
BUB1B
C12orf57
CCAR2
TFEB
PHF13
NSFL1C
GSK3A
RAB37
TNFAIP1
IFT20
CXCR4
STAU1
MED23
JOSD2
LZTFL1
RIC8B
ZNF354A
GZMA
MAP1LC3B2
FXYD2
GPKOW
SYMPK
FOXA3
DFFA
SOX6
C11orf58
ABCF2
ZNF337
ZNF605
TLR9
ZSCAN22
WDR24
EPHX2
CD1A
DCAKD
NMT1
COX7C
CCM2
ELOC
TFPT
PRPF31
MX2
STK25
LAT
MSL2
DDX23
HSPA13
DYNC1I2
FAM193A
CLEC16A
AP2M1
RPL29
RPGRIP1L
FTO
SLC47A1
SIRT4
DCP1A
LDLRAD4
DLC1
ZNF140
RABAC1
TTI2
ZNF133
TMEM59
NUF2
RFX8
ZNF821
NEIL3
CCDC90B
CHCHD3
MRPL1
PRRG2
NOSIP
SLC33A1
PSMD11
ARHGAP24
ZBTB45
NDUFS7
TES
PLAAT5
NUDT13
H6PD
EPHA1
UTP3
TMEM127
CIAO1
N4BP2L2
ARHGAP9
MARS1
HEMGN
ITGA4
LYST
SNX17
EIF2B4
ATXN7
DESI2
CDK8
PEX3
ADAT2
NET1
FAM185A
NDUFS3
KBTBD4
DUS3L
RPIA
DBNDD1
MTF2
ORMDL3
TNPO3
ZNF500
HECTD1
C19orf53
THYN1
ACAD8
MRPS31
TTC13
AURKAIP1
TMEM245
SLA
FIGNL2
SMARCAL1
CCNG2
DTHD1
REPIN1
RETNLB
SNAPC3
ZNF165
IPO4
ASXL1
BUB3
ATAD2
TOR1AIP1
PLK1
FBXO46
FAM228B
SF3B6
DHX33
AAR2
PEX26
RGL4
RAB1A
TSC2
NTHL1
LAIR1
TSC1
GFI1B
ZSCAN5A
NME1-NME2
NME1
SNRPD3
GUCD1
MRPL44
TNFRSF4
CCDC150
CDK5RAP1
TTC33
TLR6
SIRT2
NFKBIB
IDNK
MED15
ZW10
INTS12
GSTCD
BORCS7
NSA2
GFM2
TBX6
STARD10
SPC25
ZMAT5
UQCR10
BICD2
PANK3
ZNF354C
WDR87
SIPA1L3
FAM168A
STAP1
SF3A3
CFAP20
CDK5RAP2
REXO4
RBM6
RALGAPA2
KCNA2
C16orf91
SCRIB
USP48
LCK
RAB5C
UBAC1
PTCRA
ZNF56
ZCCHC8
ZNF343
AOAH
PHF23
PEAK1
HMG20A
MFAP4
TMEM222
PRPF40B
NCLN
NOP14
GRK4
TRAPPC3
ZGPAT
ARFRP1
KLHL20
MBNL1
TLE4
RIPK4
CYB561
PIGU
RPS20
FAM207A
ZNF749
TMEM160
MEN1
NR1H2
LETM1
MYO1G
RBBP5
TRIP4
RTEL1
CCNI
DPY19L4
MYLK4
AQP3
USP30
PTK2
EPSTI1
THRAP3
C17orf75
WDR36
PNPLA6
CWC22
ZNF354B
ICAM2
WBP2
TMEM102
PRKCI
NIBAN3
BRF2
ARHGEF3
ZFYVE28
CFAP99
VPS25
RPL18A
SYNGR4
CLDND1
COPS7B
PDE6D
ZNF101
NUTF2
CENPT
H4C12
GALK2
COPS2
ZNF169
ZSWIM9
LIG1
PRDM1
CASS4
RBM28
TRAT1
COMMD2
ZNF230
RPS13
CNOT4
ZNF408
ARHGAP1
OR10T2
MITD1
SUPT7L
SLC4A1AP
TCF3
EIF3F
JRK
MAMSTR
TACO1
TMEM258
FEN1
SMO
NUMA1
LRTOMT
CIAO2A
GPANK1
CSNK2B
SNRPB
RPS26
MRPL39
KCTD5
ZNF527
BOLA1
ASAP1
ZNF570
ZNF569
ADARB1
SDHAF3
KRR1
MZB1
TRAF3IP3
TMEM101
TRAF7
ALG10
NUCB2
ADORA2A
S100Z
DGAT1
RUVBL1
L3MBTL2
CASP8
STX18
LTA4H
NFKBIZ
S100A5
SAR1B
ALG10B
TBC1D19
MFSD3
CLTC
C12orf43
RPL23A
ATP5PO
AGK
CPPED1
ITGB3BP
EFCAB7
NOP16
HIGD2A
PA2G4
ARMH3
MLEC
TOX
GTF3C3
FAM163B
YJU2
SEL1L
ZMPSTE24
ZCCHC4
ZNF226
WDR46
PFDN6
MRPS18C
HELQ
GTPBP3
AKIRIN2
YIPF2
TIMM29
COX16
TOP3B
MTOR
SNIP1
ESCO2
NUP54
ZNF420
CCDC88B
TMC8
SMG8
MKRN3
SLC7A8
TMEM208
LRRC29
SUGP1
MAU2
LSG1
LMNB2
TMEM242
EXOSC4
TUT1
ANAPC5
GTSE1
ZNF235
ENOX2
HEXIM2
DEF6
FNDC11
WDR83
WDR83OS
NUCB1
MAX
DDX49
COPE
ZBED4
ITGAL
ATP5F1D
DHX8
HBP1
ASNS
CIC
VPREB1
B3GALNT2
UBC
BPI
MGRN1
PIH1D2
NKAPD1
CHRNA3
SMARCA2
CHMP7
RTTN
SPHK2
RPL18
CLIC1
ING4
AP1G1
NDUFB3
FAM126B
ARHGAP4
GOLGA3
PPIP5K2
GIN1
CTF1
MYO18A
KAT7
RPP40
IQGAP3
LAX1
GRAP2
ZNF227
CST7
SDE2
VKORC1
SMUG1
TMEM229B
SLC39A3
ANKRD40
PTPN22
MTBP
MRPL13
MRPS16
DNAJB4
DENND2D
GAS7
HUS1
EMSY
SLC25A19
NEDD8-MDP1
NEDD8
GMPR2
KIF15
KIAA1143
UBE3B
CTDP1
PPP2R5B
ARHGAP45
SEC13
MTMR9
AQR
MAP3K7CL
SETMAR
MRPL16
WASF1
CDC40
TMEM123
SSH2
PDE4B
CALM1
ARHGAP19
RAB29
CNIH4
NOTCH2NLC
CALM2
BMS1
SNAP47
JMJD4
TTC4
ZC3HC1
BUB1
PPP5D1
CALM3
METTL26
CTHRC1
FIS1
SASS6
CCPG1
C15orf65
TEFM
ZNF277
DOCK4
KMT2D
ZNF224
TRUB2
COQ4
ETFDH
C4orf46
C16orf54
SELENOH
HDAC9
RNF125
MRPL3
ZNF436
LTN1
TMEM43
CHCHD4
ZDHHC14
NKD1
ASIP
ZC3H6
H4C11
VRK1
APOBR
C1orf109
CDCA8
SOAT2
SNX16
EIF5B
TXNDC9
ZNF850
CLP1
MYL6B
RNF220
GRHL3
AHCTF1
MAF1
ZNF554
HNRNPA1L2
RRP15
ARHGEF18
RAB27B
DNAJC2
SEC22B
DMAP1
NUP153
ZNF688
ATP5MF-PTCD1
ATP5MF
DDX1
NR1H3
ACP2
SLC39A8
HSPH1
PIK3CG
CCDC88A
CDC6
MRPL21
IGHMBP2
AMD1
CDK19
ADGRE2
TBL3
GTF3C5
ATP2A3
LRP6
MTRF1
RAB30
ZNF407
TBC1D31
PIKFYVE
MICAL1
ZNF805
TOR2A
LUC7L
CFL1
ZNF37A
MRPS23
VPS13B
SVIP
PSD4
METTL7A
LRRC45
CENPX
DPEP2
DAAM1
CNPY2
STOML2
RPS6KB2
ALKBH3
IPPK
TOMM40
LOC388282
SLC24A1
INTS14
UBE2V1
SAMD3
TARBP2
TATDN3
NSL1
GABPB2
VPS52
RPS18
HSCB
CHEK2
IL21R
SREK1IP1
CWC27
PRDM11
KDM3A
UTRN
RNASEH2C
ZNF451
AP3S2
CD28
IGF1
ZNF189
MRPL50
GCSAML
NRDE2
CSTF2T
GPR137
EIF2D
CCDC77
RALBP1
MTA3
DRG2
COMMD9
PHB2
METTL18
C1orf112
RGS14
HIF1AN
PUM3
CCDC174
ADO
AP2B1
MEF2C
IST1
ARHGDIB
DFFB
CEP104
HHEX
TMEM186
PMM2
RAD52
PSMC3
FRA10AC1
C8orf33
CAND1
GPR68
LMAN2
UCHL5
RO60
ZNF45
NELFB
MED18
SCAMP4
ADAT3
IDH3B
KBTBD8
DUSP2
TBRG4
MKNK1
GPR171
MCM7
AP4M1
TSC22D4
GAS2
DIABLO
HEXIM1
OR10P1
GALM
MRPL54
APBA3
LSP1
NICN1
TMED9
LIN37
TRMT6
MCM8
STX16
SERPINI1
PDCD10
PTRHD1
CENPO
BRWD1
ZNF384
RPS3A
SEPTIN9
ZNF547
TRAPPC2B
PGM2L1
DPF1
ZSCAN23
NOLC1
RACGAP1
SLC39A13
PIGL
NDUFAF1
DSCC1
CD3E
ATXN2L
B4GALT7
ABCB8
OSCAR
NDUFA3
POLRMT
RASAL3
ZNF26
FCSK
WBP1L
PPME1
C2CD3
CUEDC1
CXCR3
HMGB1
USPL1
ESPL1
CDC14B
TMA16
INO80B
ZNF302
PRAF2
SUGCT
MPLKIP
ZNF652
STING1
UTP11
NUP107
LRWD1
ALKBH4
TRABD
ZNF148
H4C3
ABLIM2
ZNF461
RPL22
EIF4A2
MED24
VPS37C
UBL7
FDPS
MED11
SMN2
SMN1
THEMIS
QTRT2
CCDC191
ACLY
ZNF548
WRAP53
TP53
SESN1
CEP57L1
BRMS1L
PLEKHA1
TM9SF4
OR1F1
SLC25A51
ARL17B
ARL17A
SLC26A11
SGSH
TMEM41A
TMEM199
POLDIP2
SERBP1
LRRC37A3
ZNF565
ZNF146
LAS1L
CLDN12
ANTKMT
ASCL4
ZFPL1
CDCA5
THOC6
HCFC1R1
PCM1
EIF1AD
BANF1
TIAL1
PSMB6
ATXN2
RPL8
MIS18A
AHCY
GGPS1
ARID4B
KATNB1
NXT1
POLR2J3
INTS5
FKBP5
KCNN3
CKM
SART1
WRNIP1
MC1R
HEMK1
TAF3
SOD2
WTAP
H4C8
EXO1
CHRNA5
UFSP2
KIF20A
BRD8
SF3B2
C10orf88
ZNF350
SEC11C
WDR11
NOTCH1
PRKCSH
CCDC151
TTC26
RUFY3
ETFB
DPP9
FAM227B
DTWD1
TOB2
RAD54L2
CCNL1
SDCCAG8
CEP170
RDH14
LRRC1
DARS2
CENPL
MRPL58
ILF3
PPP1CC
CAPN10
TIMM9
KIAA0586
STRA6
BOD1L1
ZWILCH
RPL4
FAAP24
CEP89
ACOT7
HIRIP3
PABPC1
USP35
KCTD21
SRRT
VAPA
VPS41
GTF2H2C_2
GTF2H2C
MTR
SCN3A
UBB
SUGT1
RASGRP2
OGFOD2
WAPL
MXI1
RBM25
SH2D6
NOL8
CENPP
MAD2L2
CYP2U1
PTPRCAP
GSTA4
ARMC1
SLC44A1
CFAP298-TCP10L
CFAP298
NCOA3
TNFAIP8L2
UMODL1
TRAF3IP2
EIF1B
TSPAN10
NPLOC4
HMGB2
TMEM33
HDAC7
CNOT1