ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX20230567 | Ishikawa
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◣ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

CLTC
CTNNB1
MTF2
NOTCH2NLC
LRP6
ATAD2
PPP5D1
CALM3
MRM3
GLOD4
CCNL1
KMT5B
CCDC88A
NOTCH2NLA
MRPL21
IGHMBP2
CALM1
LAMP1
BRWD1
PHIP
SSNA1
ANAPC2
TMEM41A
SOD2
WTAP
ZC3H6
RASEF
STX18
DDIT4
NOTCH2
TRIAP1
HEXIM2
PKM
NAGPA
ADNP
CDKL3
UBE2B
ZFAND2A
IST1
SPNS1
EIF2D
ATG14
TSN
SEC13
KPNB1
NCBP2AS2
NCBP2
ZKSCAN2
TBL3
MCM7
AP4M1
MXD4
MRTO4
EMC1
GPAM
NMNAT1
LZIC
COPS7B
TMEM199
POLDIP2
HOXD8
TRIP12
FBXO36
NOTCH2NLB
RCL1
SLC44A2
DOLPP1
TOB2
PNRC2
MFN2
PNRC1
COPS8
PEPD
TIMM22
CALM2
NXF1
TMEM222
DIP2A
UBQLN1
HMGCL
NOC4L
DDX51
POMZP3
RPS28
NDUFA7
UBE2D3
FOXJ3
ADPGK
ENDOV
HEXA
MTMR2
WASHC2C
RERE
GTF2H3
EIF2B1
TOMM22
CYP51A1
ZNF721
PIGG
PRTG
ZNF212
DSTYK
SPRED1
VPS37A
CNOT7
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
STX16
NUP214
KMT2D
TCF3
RPL22
DCP1A
ATRIP
HAGH
FAHD1
PSMD3
MRPL4
DOHH
SUMF1
UBC
WDR53
FBXO45
HSP90AB1
TSPYL2
WASHC5
NSMCE2
PINX1
ATXN2L
TBCB
POLR2I
MAPKAPK5
POLR2J3
WASHC2A
SPATC1L
RCOR1
ACOX3
TRMT44
TAS1R1
NOL9
TRMT61B
PRKACA
OAZ3
MRPL9
GTF3C5
C8orf33
PELP1
MRPS35
CCDC77
KDM5A
DNAJA3
DDX23
PBLD
HNRNPH3
KLLN
PTEN
CMTR1
SMN2
SMN1
CUL4A
PCID2
NEURL2
CTSA
SNRNP70
OPA1
MRPL58
UBN1
GLYR1
RBM42
HOXD9
CYCS
ARHGEF12
COQ7
FRA10AC1
GHITM
PEX3
ADAT2
IPO11
TAF5
USP30
PARL
PPT1
WDR25
WARS1
DNAJC11
ARFGAP2
CHCHD1
NDUFS3
KBTBD4
FUS
DUS2
DDX28
ACSL3
SMG5
MRPS15
ARNTL
SMPD4
MZT2B
ZFPL1
CDCA5
RMDN3
NDUFS7
UHMK1
SARAF
LONP1
CATSPERD
COMMD1
CCT4
COQ9
CIAPIN1
SPTLC1
ATP8B1
CASC3
AJUBA
ZSWIM7
TTC19
TAGLN2
PPIL4
PHAX
FAM207A
CNP
ARF4
SRP68
RPS6KB2
UBIAD1
HMGB1
USPL1
PMPCA
ENTR1
ECSIT
ALG1
TCF12
NBPF1
TMEM128
VCPKMT
DPP8
NSFL1C
FAF1
USP42
GNB2
TOP3B
CFAP410
CLCN7
LMTK2
SUPV3L1
TSR2
MARCHF8
ADK
AP5Z1
CKS2
ADPRS
TMEM203
NDOR1
RFXANK
BORCS8
MYLIP
ULK2
MAML3
NABP1
HNRNPL
CACTIN
RLF
MRPL39
VDAC2
TTC4
RUSC2
GCN1
HPS4
SRRD
TXN2
TUBGCP6
PARPBP
NUP37
GRHL2
RANBP2
DPP9
RAD23A
ZNF800
TIMM50
C5orf51
TSR1
SGSM2
NDUFV1
TARBP2
MOB3A
IZUMO4
NDUFA10
MVD
SMAGP
KDM4B
PIK3R3
DNAJB12
DYRK1B
DCAF10
YPEL2
TBRG4
C6orf132
CRBN
ZC3H3
ZNRD2
VPS33A
MANF
GOLGA1
SRSF11
LRRC40
MRPL37
CYB5RL
XPO4
PLEKHM3
KCTD9
CDCA2
SRPRA
TBCCD1
DNAJB11
FPGS
PGS1
FAM204A
TRMU
EIF3F
SURF6
MED9
TIMM21
FBXO15
RPL6
PTPN11
SMIM12
TMEM217
TBC1D22B
PSME3
PSTK
FAM76B
CEP57
RCOR3
STK19
DXO
KCTD5
DDX1
REXO1
IP6K2
MRPS11
MRPL46
SESN3
LRRC59
PHF5A
ACO2
BRIX1
NUP160
DDX50
BRPF1
SECISBP2
TOB1
EXOSC3
SRSF6
ZNF326
AMD1
SPRYD4
MEF2D
TENT5C
PCCB
MAN1A2
GIPC1
EEF1AKMT2
CTDP1
LDHA
SLC35B1
UBOX5
FASTKD5
GARS1
SPRYD3
NOL7
DCAF1
ELP5
CTDNEP1
PI4K2A
DIP2B
KLF5
KAT8
FANCD2
TEPSIN
NDUFAF8
TNKS
OAZ1
PRRC2A
RPUSD4
FAM118B
TIMM44
RRP7A
MICU2
GSTO2
NUP188
DOLK
PPAN-P2RY11
PPAN
RAD9A
SLC7A6OS
PRMT7
MRPL55
ATP6V0D1
AVPI1
LLGL2
TSR3
GNPTG
RRBP1
SMIM13
COL12A1
EIF2B5
NCL
LAD1
H2AX
ATP6V1C1
DCAF8
TAF15
DYNLL1
MCU
SNAPC5
RTF2
DIABLO
MCCC1
HTRA2
TAF3
DOK7
TFRC
THOC1
PALB2
DCTN5
COG2
LRRC57
HAUS2
TMED2
LTO1
NABP2
SPOUT1
TUSC2
THUMPD1
NDUFAB1
ZNF292
TIGD6
HMGXB3
ATG7
TFDP2
AMOTL2
GMPPB
MRPS30
EIF4A3
UMPS
VAMP1
EIF4A2
AARS2
UBE3B
HPS5
GTF2H1
NUDT15
ANXA7
LANCL2
CDKN2AIPNL
WDR43
HIF1AN
KLHL12
GTF2B
IDH3B
APTX
DNAJA1
TAOK2
SFSWAP
H3-3B
TMSB10
GABPB1
FAM161B
COQ6
KPTN
LATS1
DPY19L4
WDR18
MOB4
MRPS7
GGA3
ALKBH3
DCPS
ELF2
AMDHD2
GRHL1
RFX3
KRT80
CNIH3
CDK5RAP1
JMJD1C
NME6
UQCRC1
EEF2
ETNK1
ASAH1
CBWD2
CCDC43
ZFAND4
CCN1
EXOSC10
ORMDL3
SRSF1
SH3GL2
SDE2
ZBTB45
FAM133B
ZNF839
RNF141
RNF125
RPL8
YEATS4
WDHD1
SOCS4
TRAPPC2L
GALNS
FREM2
METTL9
MTHFD2
TRIP4
TEFM
FBXL12
HGS
ARL16
PTPN4
WTIP
POLR3D
PDCD4
CFAP43
MCOLN1
HAUS5
RHNO1
FOXM1
ATP5MF-PTCD1
ATP5MF
ID2
EXO5
PA2G4
TSG101
MON2
PACSIN2
PSPH
CCT6A
SART1
HERPUD1
ABRAXAS2
GXYLT1
MSTO1
LRCH4
FBXO24
TULP3
SP2
TOP3A
SMCR8
PKN2
ZER1
XPNPEP3
ST13
RPLP1
CCT2
MDM4
MEF2A
CLN8
POLG
NLK
GTF2H2C_2
GTF2H2C
FBXW2
PSMF1
DDX41
VAC14
PPRC1
CDC25C
FAM53C
TCP1
MRPL18
ELAC2
IER5
ATP5MPL
UNC50
COA5
CENPBD1
CHMP1B
PSMD6
PPP2R3B
IL4I1
NUP62
ATF5
SLC25A28
MRPS2
C9orf116
ZNF337
TARDBP
ZSCAN22
CLIC4
SLC25A26
ZGPAT
ARFRP1
ZC3H10
PFDN2
NIT1
HNRNPAB
BRAP
ACAD10
RPS3
CIAO3
EIF1
U2AF1L5
U2AF1
SETD1A
LNPK
RNF166
CTU2
ZNF148
GRAMD2B
IFRD2
DCP1B
POLR2M
ERI1
ZNF594
WSB1
UBAP2
ERRFI1
H2BC21
H2AC20
H2AC21
NEK9
RANBP3
WDR61
DENR
LIPA
ZNF384
EFTUD2
CCDC103
C6orf226
RNASEH1
UBE2D2
KLF10
MPHOSPH10
MCEE
COQ10A
MKS1
PSMD12
TCTE3
ERMARD
ASH2L
TDRKH
UNK
NOL10
EHD1
GLRX3
ATXN7L2
FEM1C
BLOC1S1
MED4
LTBR
MIGA2
GABARAP
STAM2
TBC1D30
GNS
IDI1
C19orf48
FAM156A
FAM156B
ZSCAN25
ATXN2
MCAT
TMPO
TIGAR
SULT2B1
EXOSC8
PSMD2
ZNF875
CDH1
BLOC1S2
RMND5A
RNF103-CHMP3
TAF1B
MFSD1
OSCAR
NDUFA3
ZFAND5
ZW10
EDF1
C2orf69
QTRT1
PNP
SRSF5
NUP93
SIRT3
PSMD13
KDM3B
TRIM13
NOM1
INO80
CABIN1
MRPL38
PCYT1A
TOP2B
MTHFSD
GID4
ATPAF2
PDCD6IP
KIF1B
NIP7
COG8
TPP2
SMARCA5
POR
ATP9B
HBS1L
RPSA
TXNDC15
IARS1
STYXL1
CAAP1
ITGB8
POLR2C
ECHS1
REXO4
GPN2
XPOT
ERCC6L2
CUL9
SENP5
AURKAIP1
TMEM230
WDR4
SLC25A37
CLPX
SYCE2
EPHB3
SLC24A1
INTS14
NUDCD3
TMEM104
NAT9
CZIB
ABAT
RAD54L2
ACAD9
ATG101
HMGCS1
HNRNPUL2
TTC9C
SH3YL1
ACP1
CNBP
YIPF4
EXT1
VCL
RPS20
YWHAQ
BUD13
TMEM242
SLC25A38
ALDH3A2
ASAH2B
GMFB
KATNBL1
PFKM
SENP1
ANXA2
GTF2I
GATAD2A
RBM18
MRRF
PKP4
CCDC148
PPP1CC
PRPF19
CANT1
PSMD8
CDK11B
PLEKHH3
ARHGAP19
SHBG
ANKFY1
FXR2
AGK
WFDC3
DNTTIP1
EEF1E1
UFL1
RBSN
CEP350
MRPL40
HIRA
PARK7
MARCHF5
CPEB3
ASNS
PCNX4
C16orf95
MIDEAS
ASB6
EXOC2
CENPS-CORT
CENPS
COMMD2
MRTFA
THAP4
ATG4B
YIPF6
ELF1
WBP4
SNRPD1
C16orf70
PGAP2
SC5D
TRPC4AP
ADARB1
MINPP1
EIF5
RPL18A
GET4
HAP1
FEM1A
RBL1
MTG1
NDUFS6
UBE2S
RPLP0
ZBTB17
YTHDF2
YIF1A
NUDT1
MRM2
TRMT2A
RANBP1
LUC7L
C18orf32
ADCK1
THOC6
HCFC1R1
CACUL1
TUBGCP5
GTF2IRD2B
FASTK
CCDC91
NFYC
SAR1B
YBEY
MCM3AP
MZT2A
PSMG2
CEP76
CHSY1
SNAPC3
HERC3
OGDH
PYURF
PIGY
DNAJC9
WDR74
ATF4
CCNC
NFATC4
STARD7
SLC39A7
RXRB
CREM
SCOC
NTMT1
TMEM183A
GNE
POLR2J
SLC9A3R1
GOSR2
CCDC130
TEDC1
TIFA
DNAJB1
TECR
SFR1
MMAA
PPIF
ETFA
UBXN1
H1-10
ZNF500
CHUK
ZNF740
CSAD
RNF6
TP53RK
AACS
EED
TMEM248
ASL
CALR
KAT5
GADD45G
THRAP3
SLC35B2
STX6
SNX13
FAM131A
ARL8B
DSCC1
CS
FBXO21
MTX2
RPLP2
HUS1
PARP2
BCKDHB
SDHAF2
CPSF7
SCAF1
ZNF398
ZNF425
CCDC34
WDR6
BOD1L1
SLC25A16
TNPO1
PLCXD2
SLC2A1
RNMT
FAM210A
NDUFA11
VMAC
DUSP5
SLC25A51
AREG
SNX19
C17orf49
MAN2C1
MSMO1
RPS5
NLE1
ZNF507
ARAP2
POLI
MYDGF
UNC13B
AGPAT3
WDR81
IPO7
PIGU
POLR3E
ZBTB8OS
RBBP4
DPH1
NAGK
PITRM1
PUF60
EIF4G2
RNPS1
CRCP
ATP5F1A
POLR1F
WAPL
ZNF518A
TWNK
MRPL43
PPP4R3A
MED23
PSMC5
FTSJ3
PLAG1
CHCHD7
CD44
SMIM10L1
PRH1-TAS2R14
SETD5
SLC35E1
FOS
TDRD3
PRDX1
RANBP6
R3HDM2
CBWD5
MRPL12
CBWD3
YY1AP1
DAP3
ETV5
TAF12
KIF11
PEX26
LRRC37A3
UBE2G2
THOC3
FAM71E1
EMC10
ASH1L
THBS1
RPL13
ACADVL
IMP3
SRSF9
FNIP1
DDX46
ZCCHC4
CLN5
COA8
BAG5
LASP1
TRIP11
SPC24
FAHD2A