ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX14127544 | OCI-AML3
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◣ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

H4C12
H4C15
H4C14
H2BC21
H2AC20
H2AC21
H4C11
EGR1
H1-2
H3C15
H3C14
H2AC19
H2AC18
FOS
H2BC18
H3C13
H2BC12
H2AC12
H2BC11
H2AC11
H1-4
H2BC5
H1-5
H2AC16
EIF4A1
MCL1
H3C2
DDX5
H4C9
SRSF7
H2BC4
H2AC6
CKS2
PTMA
FOSB
H4C8
H2BC8
H2AC8
H2BC17
H2AC17
H1-3
H3C7
H2BC9
ATF4
DDX3X
TRA2B
MDM4
H2BC13
H2AC13
H4C3
EIF1
EEF1A1
KLF7
TUBA1B
H4C5
TPI1
H3-3B
ACTB
PPIA
UBC
EIF5A
ZBTB37
DDX21
H2BC15
H2AC15
CA2
MAT2A
ZBTB4
POLR2A
CALM2
TMSB4X
GAPDH
H4C6
NPM1
JUND
SFPQ
NUCKS1
MTHFD2
H3C11
H4C13
SRSF2
MFSD11
FUS
MRPS18B
H2BU1
H2AW
CBX3
HNRNPA2B1
GPX1
SLC39A10
H4C1
H3C1
H4C4
UBAP2L
C1orf43
TAF1D
C11orf54
RCC1
FTL
HNRNPU
PABPC1
ANP32E
H3C4
H2BC7
H2AC7
ZFP36L2
EFCAB2
ZFP36
SLC38A2
RRP12
HNRNPA3
JUNB
HSPA8
HMGN2
HNRNPH1
ANP32B
EIF4A2
HIPK3
ZNFX1
TUBA1C
RPL23A
SLC3A2
ANKRD13D
SUB1
CXCL8
RFX1
ADPGK
H2AC4
EEF2
POLDIP3
HNRNPF
WDR74
RPL8
SRSF6
TFRC
ENO1
XBP1
SRSF3
NCL
N4BP2
CITED2
KMT2E
SRSF5
CIRBP
NFYC
GABPB1
P4HB
RPS2
RPSA
C19orf48
BCLAF1
PMAIP1
TNF
EIF5
RPL10
ZCWPW2
AZI2
PPIF
HNRNPAB
CNBP
RPLP0
TRIB1
PRDX1
UCK2
RPS20
RPS19
RPL13A
RMI1
HNRNPK
YWHAZ
MBNL1
ODC1
PFN1
TRAF7
LDHA
SF1
H2BS1
UBE2S
ATAD2
CFL1
TANK
TAGLN2
PNP
NFE2L2
PCF11
PSEN1
TMBIM4
CXCL1
YBX1
RPL21
GTF2A1
BTG1
SLC16A3
DALRD3
NDUFAF3
PCBP2
ETF1
APTX
DNAJA1
KLF6
GSTA4
LUC7L2
EIF4G1
RPS16
PDCD4
SNX5
MGME1
HNRNPD
SIRT4
WDR43
H3-2
IRF2BP2
RPS23
ATP6AP1L
MTX1
THBS3
SLC7A1
PPP1R15A
PCIF1
JPT1
C12orf57
RPL12
LRSAM1
MATR3
NFKBIZ
HSP90AB1
CLK1
NKIRAS1
RPL15
KPNA2
RHEB
TASL
CBX5
HNRNPA1
ZNF217
TMEM267
INO80
CCT5
ATPSCKMT
COQ2
YWHAG
GLUL
PBLD
HNRNPH3
FASN
PABPC4
REPIN1
SETD7
RPS8
PCBP1
CEBPA
CORO7-PAM16
CORO7
HSPA4
H2BC14
H2AC14
EGR3
LRRC37A3
TPT1
THBD
E2F3
SRCAP
LOC730183
RPL22L1
LDLR
MARCHF6
EPC1
MTRNR2L8
HSP90AA1
RPL10A
RPL13
SLC7A5
HDGF
H4-16
KLF2
GTF2I
EIF4A3
DENND4B
CTBS
TLK2
GTF2IRD2B
GPCPD1
PTBP1
IVNS1ABP
ZWILCH
RPL4
CITED4
AZIN1
CTCF
CCNL1
RPS13
RAI1
XPOT
RPL3
RPLP2
RPS12
FRAT1
UNKL
RPL17-C18orf32
RPL17
RPL32
ARF4
RPL27A
TYMP
ODF3B
ZC3H6
TMPO
CYB561
DARS1
CSKMT
C11orf98
ST7L
CAPZA1
BTF3
H4C2
RPL37
H2AX
NOP58
USP22
SLC25A6
MPC2
DCAF6
UBE2M
RPS15A
YWHAE
IFRD1
ZC3H4
GPN3
FAM216A
HMGB2
HCFC1
TMEM187
SRGN
MORF4L1
LSM8
ZNF487
ZNF804A
ZBTB25
ZBTB1
PHB2
S100A13
CHTOP
ISOC2
DLX1
CCNI
MYLIP
ETV6
MCM6
FABP5
FAM43A
GDI2
HNRNPDL
ENOPH1
AZU1
RFX3
ACTR2
JADE1
PKM
ZC3H10
RPL31
PTP4A1
ENOSF1
RPL41
PRKAA1
HAGHL
CCDC78
UBE2D3
ASXL1
SRSF1
ARHGDIA
OPA1
NME2
PAN3
RPS6
MFSD3
SESN2
RNH1
SYNCRIP
MBP
HERPUD1
SPAG7
NDRG1
PRCC
CCT2
ALDOA
CDC42
ACTR3
ATP2A2
DUSP2
H2AZ1
H3C10
RPS27
NASP
PUF60
CREBZF
SMARCC1
RCC2
SLC22A4
TOB1
LRPPRC
RPL28
TARS1
JUN
ELK4
GTPBP4
EEF1D
TIGD5
STAG1
TNFSF9
ING3
ATAD2B
DUSP1
S100A11
H3C12
LONRF1
TSC22D3
ID1
PRMT1
BPTF
NFKB1
TXNRD1
CDC25C
FAM53C
TTC30B
ZNF787
RAB11FIP1
FTH1
RELT
ZNF207
ZNF335
PPP1R15B
SARAF
ZFAND5
ZNF783
HSP90B1
NDUFS1
EEF1B2
RBM3
SDE2
ERCC1
DDX19B
AARS1
B2M
TOB2
HNRNPL
LYST
TIMP3
BCOR
RPL29
MARCHF7
DDX59
MAPK1IP1L
SERPINB1
MCM7
AP4M1
ERLIN2
ERCC6L2
PNN
SCAF8
EBAG9
ZNF131
OGFRL1
MEF2D
FMC1-LUC7L2
FMC1
CD164
TBC1D5
ANKRD18B
STAG2
UNK
STYXL1
ITGA4
CXCR4
RPS3
AMD1
SMARCE1
MICOS10-NBL1
MICOS10
EZH2
BHLHE40
BAZ2B
IL6R
LYN
SNRPD1
EIF4G2
FOXP1
KNTC1
KEAP1
HIPK1
CHD1
PAIP1
BACH1
PPP2R2A
NXF1
ILF3
MDM2
INTS6
PPRC1
HSPE1-MOB4
HSPE1
HSPD1
RPL7A
MED22
RHBDD3
EWSR1
GGNBP2
PNRC2
SNRPB
GTF3C6
EP300
MKNK2
WDR49
WDR1
ETS2
ST3GAL1
ID2
FNTA
ARIH1
CEBPB
RPLP1
KANSL1
USF1
SLTM
RPL24
TMX4
RGL2
HMGB1
ELOC
INO80D
TRIM27
SINHCAF
TRPM2
RPS26
ING5
KIF27
DNAAF2
CFLAR
IL17RA
HEXIM2
STMN1
ADIPOR2
GOLPH3
SLC25A13
KATNAL2
PIAS2
DDIT4
SRSF4
CDK12
PABPN1
ANXA2R
NIPBL
ATG16L2
RBMX
SRF
POLR2J3
IPO7
HSPA5
EIF3A
CAPZA2
GADD45B
SETD5
DOT1L
FOSL1
LAT
SLC25A33
NPEPL1
ZNF124
ATP6V0C
TAF4
SNTB1
LONP1
CATSPERD
RBM14-RBM4
RBM14
YTHDF3
NSMAF
TBL1XR1
DBI
C2orf76
PIGW
MYO19
XPO6
RAN
H1-10
CYCS
TCERG1
CAP1
RPL35
ARPC5L
CENPA
RNF138
OSBPL1A
RNF169
RNASEH2B
CSDE1
PRDM15
HNRNPC
HMGA1
APOLD1
CYC1
SREBF1
EIF3E
BAZ1A
MICAL1
CDV3
PHF19
EDEM1
CTNNB1
CEP350
EIF4E
DHX15
NCAPG
HSF1
BOP1
DUS3L
PAK2
NUFIP2
EIF4B
NACA
DYRK1A
COX20
GMEB1
NFIL3
RAB7A
SPRY2
OAZ1
WDR6
GRPEL1
YBX3
BANP
RRM2
ZAR1L
BRCA2
DNAJB4
FUBP1
CCL5
EXOSC4
RPL6
RPL5
ZCCHC3
FBXL17
BZW1
SENP6
NAP1L1
LAPTM5
CCDC85B
RPL18A
NOCT
KDM3B
DDX17
SMIM19
SLC20A2
C9orf40
ZNF22
MED31
C17orf100
ARHGAP26
FAIM
MRPL3
C15orf61
ZNF766
AKAP8
HSPA9
RPS27A
CLHC1
LIG3
INSIG1
MKI67
E2F5
CPQ
PPP1R27
CALM1
NUP153
GABPA
ATP5PF
RAD23B
ZNF24
TCTA
RHOA
ATP2B1
TXN
SPI1
HNRNPUL1
CSNK1D
ERAP1
ARIH2
UHRF2
RLIM
LRIF1
ELANE
SERBP1
MEPCE
ZCWPW1
MIDEAS
ZMYND11
TIGD1
EIF4E2
RPL37A
STARD7
CTPS1
MAN1B1
RPL7
NNT
TALDO1
ME1
C16orf54
PPP3R1
NUDT19
KMT5B
NRF1
FAM83D
SBNO1
RBM12B
CRIP1
UBB
WDR4
SIK3
ZNF532
VCP
RNPS1
GRB2
TUBB
GNB1
IQGAP1
ADGRE5
NABP1
COQ8A
RBM12
CPNE1
VMP1
PTRH2
ZFX
SSU72
C5orf24
TADA3
ARPC4-TTLL3
ARPC4
SEC63
TASOR
DYNLL1
ELF2
LIN9
SRSF9
UQCC3
LBHD1
RUNX1
AHRR
PHF10
SMN2
SMN1
DUSP28
ANKMY1
SRRM2
NRROS
FLT3
RASSF2
HNRNPR
RPL23
ATL2
GBE1
ZBTB2
SLC22A15
TRA2A
NBN
SLC25A32
DCAF13
RPL34
HK2
DDX39B
TRNT1
MCMBP
TFAM
RACK1
ZNRF2
CFD
PCBD2
TNFRSF10B
PTPN6
MAN2C1
TFAP4
LMNA
VEGFA
SUSD1
ARPC3
NAPEPLD
FERMT3
GART
DRAM1
FBXO41
ADNP
GPD2
IKZF1
RPS3A
SFMBT2
ZBTB11
CYREN
SLC25A28
ANKRD28
DDX23
MTF2
IFRD2
LAMP1
CLTC
FEM1A
DSTYK
COPS7B
EIF2D
CALR3
C19orf44
NOTCH2NLC
STX18
TMEM41A
TBL3
TIMM21
FBXO15
BRWD1
ABCF2
MRPL21
IGHMBP2
NCBP2AS2
NCBP2
CALCOCO1
DCP1A
UCKL1
TSNAXIP1
RANBP10
PAFAH2
PPP5D1
CALM3
GSPT1
TMEM199
POLDIP2
SOD2
NOTCH2NLA
TMEM222
WTAP
WDR53
FBXO45
SPATC1L
GATB
FOXJ3
CLPB
NDUFS7
SSNA1
ANAPC2
RBL1
TSN
CCDC88A
SEC13
TOMM22
SPNS1
LRP6
MRM3
GLOD4
AURKAIP1
ZSCAN22
ORMDL3
NOTCH2
MRTO4
EMC1
TCF3
NDUFS3
KBTBD4
COPS8
STX16
TIMM22
KBTBD7
NMNAT1
LZIC
CCDC77
BTRC
NUP214
CNOT1
TMEM115
PEMT
MED23
TRIP4
C16orf91
DOHH
CFAP410
ST3GAL2
KMT2D
POMZP3
CHMP4B
SYMPK
SCAF1
KPNB1
CTDP1
ZNF337
BOD1
AP2S1
PSMD3
TSSC4
IST1
PEX3
ADAT2
AHCYL2
WASHC2C
FOXA3
PNKD
AAMP
SNX17
EIF2B4
TCEA2
HTRA2
TSC1
GFI1B
PA2G4
FRA10AC1
CDKL3
GTF2H3
EIF2B1
ZNF212
PHIP
CLEC16A
SMPD3
THRAP3
NUF2
WASHC2A
HEXA
PEX26
NAGPA
KCTD9
CDCA2
KBTBD6
MRPL24
RPL22
ZFAND2A
TTC13
USP30
NUDCD1
ZCCHC4
PPP1R12B
MED15
HIKESHI
UBE2B
NOTCH2NLB
KDM5A
ZKSCAN2
ZBTB45
TRIAP1
ZNF721
PIGG
ATP5MF-PTCD1
ATP5MF
SCNM1
LYSMD1
RPS6KB2
FAM207A
RPS28
NDUFA7
MAF1
ATG14
OSCAR
NDUFA3
INVS
ERP44
CRTC2
USPL1
MAD2L1BP
MICOS13
HSD11B1L
TMEM127
CIAO1
OAZ3
MRPL9
IPO11
SCRIB
KCTD5
RPIA
PANK4
C8orf33
GTPBP2
NPRL2
CYB561D2
ZNF444
NOP14
GRK4
WDPCP
MDH1
TMTC3
CEP290
PPP1R12C
DNAJC11
TRAPPC3
GPAM
DIP2A
TNFAIP1
IFT20
RANGAP1
DUS2
DDX28
ZNF384
CCAR2
PHB
ZW10
CYP51A1
BRIX1
SLC35B4
MAPKAPK5