ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX327758 | MM.1S
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◣ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

HIKESHI
IFRD2
DDX23
BOD1
CALCOCO1
TMEM115
PHB
CALR3
C19orf44
LARS1
GSPT1
TCEA2
AHCYL2
SCNM1
LYSMD1
PNKD
AAMP
ORMDL3
PPP1R12B
TMTC3
CEP290
ZNF225
MMACHC
CCDC163
CHMP4B
ST3GAL2
CLPB
SMPD3
BTRC
CTU1
UCKL1
NTAN1
INVS
ERP44
PAFAH2
SYMPK
FOXA3
CRTC2
KBTBD6
PPRC1
WDR87
SIPA1L3
TMEM127
CIAO1
TTC13
RPIA
PANK4
SNX27
CCP110
ZNF189
MRPL50
MAD2L1BP
GTPBP2
UBAC1
SNX17
EIF2B4
CLEC16A
TRAPPC3
TSNAXIP1
RANBP10
SLC35B4
MED15
STAU1
TNFAIP1
IFT20
ATP5F1D
MRPL24
C1orf159
PPP1R12C
GFUS
FASTKD1
PHF12
ZFYVE1
ATP5PO
TTC33
ZFYVE19
DNAJC17
ING4
ZFYVE28
CFAP99
SCRIB
VCPIP1
C8orf44-SGK3
ING3
ZNF749
C16orf91
UNK
TSSC4
AP2M1
TSC2
NTHL1
NPRL2
CYB561D2
NUDCD1
FEM1A
THRAP3
GATB
TMEM59
ZC3H11A
TRAK2
STRADB
SMARCAL1
STK25
KBTBD7
COX7C
ZNF384
BANP
ZNF444
SCAF1
PHF13
ABCF2
WNK1
TIMM21
FBXO15
UBQLN4
LAMTOR2
TMEM208
LRRC29
CLP1
CCDC146
MICOS13
HSD11B1L
CTF1
PEMT
SLC4A2
CDK5
PRCC
SIRT2
NFKBIB
BOLA1
DESI2
HTRA2
RPL8
NOP14
GRK4
ZNF56
POLR2E
NDUFS2
NFXL1
UBR2
TBL3
GTF2H4
ZNF169
ZNF420
FBXO46
UFSP2
STK17A
ZSCAN22
WRNIP1
PEX26
DDX49
COPE
ZNF235
OSCAR
NDUFA3
FBXW11
AP2S1
RAB1A
LETM1
RALBP1
RPGRIP1L
FTO
TFEB
BUB1B
GPANK1
CSNK2B
SEPTIN9
PSMD11
RBM6
JOSD2
SSBP1
CHCHD3
CCDC150
ZNF224
SMUG1
DFFA
DSTYK
C19orf53
CNIH4
SLC25A19
ELOC
THYN1
ACAD8
ZNF337
CAPN15
UBE2Q1
SEC61A1
CLDND1
DCAKD
NMT1
TMEM43
CHCHD4
SERPINI1
PDCD10
BICD2
HMBOX1
INTS9
CNOT1
UBL7
USP48
DYNC1I2
FDPS
LMNB2
IGSF8
TMEM69
GPBP1L1
TOR1AIP1
B3GALNT2
PSMD2
ZNF32
TFPT
PRPF31
KMT2B
SLMAP
PANK3
RANGAP1
RAB5C
PHF23
TMEM102
ZNF230
AKIRIN2
CCDC90B
WDR53
FBXO45
LTA4H
SEC11C
IPPK
CFAP410
WDPCP
MDH1
ZNF554
ARHGAP9
MARS1
ZNF37A
TIMM13
CDK5RAP2
PIGU
DDX47
ZNF354A
RALGAPA2
ZNF133
RABAC1
SSR2
BUB3
FAM185A
ZW10
CTDP1
AURKAIP1
USP31
PA2G4
PRR14
THOC6
HCFC1R1
WAPL
ZNF419
TBX6
SOX6
C11orf58
NDUFB5
MRPL47
WBP2
RPS6KB2
CIAO2A
FBXO48
APLF
GPT2
PNPLA6
RPS20
C1orf109
CCDC174
EIF2S2
RPS26
SCAMP4
ADAT3
ZNF547
TRAPPC2B
RIC8B
GPKOW
INO80B
SLX1B
SLX1A
BOLA2B
BOLA2
BOLA2-SMG1P6
RAD51AP2
RPS13
EIF5B
TXNDC9
UCHL5
RO60
CCNT2
UTP11
FAM193A
ZNF277
DOCK4
NUP153
ZNF350
EXOC4
USP35
KCTD21
SYNGR4
KAT7
CNOT4
MXI1
FBXL19
COPS7B
PDE6D
RPS7
TRAF7
ZNF527
GID4
ATPAF2
VPS50
HEPACAM2
SYPL1
INTS1
PSMC4
PSMD4
ABCC5
LUC7L
RPL18A
TRABD
ZNF451
ZNF747
ZNF586
VAPA
TTC1
ACTR1A
SUFU
ZGPAT
ARFRP1
DEDD
TRMT1L
SWT1
PGBD4
EMC7
SNRPE
TMEM101
XPOT
ZNF862
CLPP
MGRN1
ZNF484
AHCTF1
ILF3
SPHK2
RPL18
MAX
MED27
EXOSC4
METTL26
CSRNP2
PTBP1
ZCCHC8
VIPAS39
AHSA1
ZNF2
HSPA13
TMEM245
RBL1
L3MBTL2
PHB2
MRPL20
NCLN
ZCCHC4
QTRT2
CCDC191
ZNF548
SSR3
NCBP2AS2
NCBP2
KATNB1
MED11
SCAMP3
TMEM186
PMM2
CRK
ZNF773
NFKBIL1
ATP6V1G2
SCYL3
PPP6C
ZNF140
PRRG2
NOSIP
RAB30
VPS4B
ZNF343
RPS3
GINS3
BIRC5
CNOT6
LIN37
LEMD2
SDCCAG8
CEP170
SLC38A9
RETSAT
RPL12
LRSAM1
ADSS2
POLR2J3
METTL3
COPS8
ASXL1
NKIRAS1
RPL15
ZNF599
KBTBD8
UBE2N
PRKCSH
CCDC151
DCP1A
ENOX2
ZNF226
CFL1
TMED9
MAF1
ELP6
DNM1L
DCAF1
CAPN10
POLRMT
RAB7A
ITPR1
FAM149B1
ECD
ZNF585A
COMMD9
DNAJC28
CDK9
UBA1
ZNF567
GGPS1
ARID4B
DGAT1
AKAP8
PSMB4
WASHC3
GFM1
CXXC1
SF3B2
ZNF45
ZNF584
TPGS1
ZMAT5
UQCR10
ZNF227
CDC25C
FAM53C
FAM222A
ZNF25
CIAO3
CWC25
CARS1
TOR2A
HSP90B1
COPS7A
TMEM94
ZNF764
OPA1
COG2
MORF4L1
RPS3A
NOLC1
PCM1
FBXO38
TSNAX
APH1A
UBA52
AQR
IPO13
WASF1
CDC40
ABRAXAS2
NCDN
KIAA0319L
SERP1
EIF2A
CTNNBL1
PPP1R7
PASK
KHDC4
C12orf43
MTR
BET1
IFRD1
CDC34
MED23
ZNF17
CDK8
DPM3
TERF2
ZNF416
DOHH
SKP2
LMBRD2
ACP6
DPP9
PGAM1
SH2D6
SUGP1
MAU2
TSN
CEP350
EIF3C
EIF3CL
ZBTB7A
MRPS16
UBE2V1
FAM228B
SF3B6
RAB8B
TMEM33
CAND1
RAB29
SNAPIN
PPP1R13L
POLR1G
TMEM199
POLDIP2
RPL22
ZNF628
MRPL54
APBA3
OAZ3
MRPL9
CUEDC2
MEN1
RWDD1
ZNF500
SKIV2L
NELFE
VEZT
FGD6
RPL34
ACLY
EIF1B
DARS2
CENPL
TRUB1
TOR1A
RPP40
CCDC124
HEXIM2
BOD1L1
EIF3D
RBL2
PSMB6
NUMA1
LRTOMT
NAPB
HIRIP3
SLC25A44
RPS19
SF3A3
ZNF805
ZC3H10
ZNF304
PARK7
DUS3L
SMN2
SMN1
MPI
NPL
CHCHD6
ESCO2
NUF2
CCAR2
CD2BP2
SLC37A3
LRRC8A
KYAT1
TMEM160
CLINT1
PSMD3
TOGARAM1
KLHL28
B4GALT7
MAMSTR
ZSWIM9
LIG1
TSACC
CCT3
NUDT13
PRPF4
CDC26
DPH2
ZNF155
AP2B1
THAP1
RAB3C
C15orf40
BLOC1S5
CMPK1
SERBP1
IPO8
CCNL1
STRN
HSCB
CHEK2
YY1AP1
DAP3
ZRANB3
R3HDM1
BABAM1
PSMC3
REXO1
INTS4
MEA1
KLHDC3
GPR137
ZNF26
NOP53
RAB1B
TTLL11
SDF4
B3GALT6
RNASEH2C
LRPAP1
SUPT5H
UCK1
ATP5MF-PTCD1
ATP5MF
RPL27
BDP1
PRKCI
SENP5
TOMM22
DAZAP1
SASS6
RPL23A
ZNF436
VAMP7
ZNF268
NUTF2
CENPT
ARPP19
MITF
IPO7
SH2B1
TUFM
ZNF691
ALG10B
FBXL18
DMAC1
CANT1
NARS1
ZNF530
RPP30
ABLIM2
EMSY
RCAN1
XAB2
UBE4A
XRRA1
SPCS2
DDX25
PUS3
ZNF180
ZNF550
ZNF286A
RPS27
CCDC117
ZNF211
NICN1
ZNF317
ZNF513
GSK3A
KLHL24
SLC33A1
NUP205
COA3
CNTD1
WDR18
C7orf25
ZNF221
TMEM222
ARMH3
FBXO9
MVB12A
MYBL1
RC3H2
TSNARE1
VRK1
OSBPL11
KPTN
RTEL1
TPR
ODR4
ZNF605
JTB
KNSTRN
FCSK
ZNF446
MYL6B
NME1-NME2
NME1
DNAJB6
NCOA3
GHITM
VKORC1
SAP30
DENND1A
AMD1
CDK19
YIPF2
TIMM29
SND1
ZNF772
ZBTB45
PEX12
MARCHF5
CPEB3
ZNF668
ZNF646
ZNF165
NFATC3
SART1
FIS1
POLR2H
USP15
KIAA0930
TMEM258
FEN1
TIMM22
NAA38
CYB5D1
SHLD1
R3HCC1L
CWC22
ZDHHC16
EXOSC1
WDTC1
ALG10
TMEM230
RNASEH2A
NMNAT1
LZIC
PRPSAP1
RACGAP1
ZNF417
DPM2
SNIP1
DHX30
ZSCAN32
ZNF174
SETDB1
ZNF460
LRRC47
NUP214
CACTIN
RAD52
ZNF324B
TXNL4B
DHX38
TPRKB
NDUFS7
ARHGEF1
NDUFB10
CDC6
UBE2D1
SHPK
CTNS
TTC31
CCDC142
ELOB
TIMMDC1
REXO2
FAM193B
THAP4
ATG4B
C16orf86
RPL29
TMEM214
YJU2
STX10
IER2
SLC30A6
ETFDH
C4orf46
MINDY1
PRUNE1
SMG5
BRIX1
SLC35E1
PRAF2
ZNFX1
SNAPC3
RPL37
RAB5IF
DYNC2LI1
WIZ
PSMD10
ATG4A
AP5S1
TMEM147
YWHAG
TOE1
MUTYH
PCNP
TRMT2A
RANBP1
SZRD1
LONP1
CATSPERD
KDM4D
CWC15
C8orf76
POMZP3
RPS21
TMEM129
TACC3
METTL18
C1orf112
PSMA2
MRPL32
CBR4
TMEM150A
UBE2J2
ZNF565
ZNF146
DNAJC14
TIMM23
PPME1
C2CD3
EXO1
MRTO4
EMC1
KCTD5
NR6A1
ATG4C
NDUFAF5
ESF1
KRBA1
GMPPA
PUM3
CAMLG
RDH14
SPDYE14
SPDYE10P
PURB
ITSN1
CRYZL1
ZNF776
BRD3
CMTR1
MAP3K13
MFSD13A
TOR1AIP2
CCDC77
TAF8
ATE1
SLC35E2A
ORC4
MBD5
SMIM13
STMN1
HBP1
ABT1
GTF2I
HDGF
NSA2
GFM2
M6PR
KLRG1
ASH1L
PPP1R11
SSNA1
ANAPC2
ZNF684
MTMR9
AKT1S1
TBC1D17
MED24
CDCA8
NDUFS3
KBTBD4
MIA3
RBM28
AHCY
ANGEL2
ZNF213
ERI3
ZMAT2
VPS45
SETMAR
FAM207A
RPS28
NDUFA7
NUP107
SAMM50
CHCHD5
KAT8
SFXN5
SNRPB2
FOXJ3
ZNF79
CIZ1
DNM1
SSU72
LCORL
TLE4
DOT1L
CLPTM1L
SESN1
CEP57L1
DIAPH1
HSPH1
ZNF302
MCMBP
TUT1
TRAPPC10
PAK2
MCM10
PTCD1
CPSF4
SPECC1
TTC30B
SEC13
ADPGK
KIF15
KIAA1143
TMEM248
ZNF184
TMCO1
SERTAD3
PRPF6
ADAT1
NOP16
HIGD2A
BIVM
POGLUT2
RNMT
FAM210A
DTX2
ZNF721
PIGG
TDP2
ACOT13
LRWD1
ALKBH4
MRPS33
ZNF658
PCBP2
GPR108
WASHC4
NDUFAB1
ATP13A1
WRAP53
TP53
RNF126
PES1
CYCS
SLC39A13
GRWD1
CBX1
PDIA5
NFATC2IP
ACBD5
UBXN4
CEP97
METTL17
DAXX
FAM32A
SEL1L
GAPVD1
LRGUK
MRPL19
NELFB
SP4
NR1H2
TRMT10A
MTTP
USF1
PPIL2
PTRHD1
CENPO
POLR1B
TTC37
ARSK
PEF1
PPP2R5B
UBXN6
IQGAP3
SECISBP2
TMEM217
TBC1D22B
PGM2L1
SUCLG1
ZZEF1
CYB5D2
LAMTOR3
TMEM41A
C8orf33
CC2D1A
C19orf57
OTUD4
CNPY2
LSG1