ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9730734 | THP-1
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◣ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

UBC
H4C15
H4C14
H1-2
H2BC21
H2AC20
H2AC21
H3C2
NFYC
PABPC4
CITED4
H1-3
RCC1
H1-4
H2BC5
WDR74
AZU1
H2BC11
H2AC11
GPX1
EGR1
H2BC18
H3C13
H2BC12
H2AC12
H3C15
H3C14
CAP1
H2AC19
H2AC18
H2BC17
H2AC17
H4C9
H4C11
H4C12
PARP2
H1-5
H2AC16
SLC3A2
ST3GAL3
H4C6
ZMPSTE24
H3C8
EEF1A1
CEBPA
H2BC8
H2AC8
H2BC4
H2AC6
TASL
PTMA
ACTB
ZFP36
H1-10
H4C3
H4C1
H3C1
H2BC13
H2AC13
H3C10
H3C7
H2BC9
FTL
EXO5
H3C3
PNP
SIRT4
EIF4A2
H2BC6
ZNFX1
TIMP3
PRRC2A
ZFP69
H3-2
TXNIP
ID1
ANKRD13D
DALRD3
NDUFAF3
ZFP69B
MCL1
TRAF7
POLDIP3
H4C5
EIF4A1
GBA
ELANE
H3C4
H2BC7
H2AC7
ZBTB4
POLR2A
MS4A6A
H2BC14
H2AC14
H3C11
SRGN
ZFP36L2
CITED2
ZBTB37
CA2
TMSB4X
ZEB2
PLAC8
H1-0
IRF2BP2
ZNF438
JUNB
RPS27
MS4A7
RPL10A
BAHCC1
CBX3
HNRNPA2B1
H4C8
TUBB4B
CALR
PPIA
H4C4
MRPS18B
FAM200B
MFSD2A
LOC730098
SRSF2
MFSD11
AMD1
HSPA8
HMGN2
PABPC1
H3-3B
ADAMTS1
TNFSF9
IRF8
PFN1
PPT1
ZNF684
FUS
CHI3L1
MBNL1
SRSF3
H2AX
H2BC15
H2AC15
S100A13
CHTOP
MTF2
YBX1
IBA57
TRIT1
JMJD1C
MAT2A
HMGB2
SVBP
ERMAP
MYC
SLC38A2
HSP90AB1
RPL10
H4C13
RPL12
LRSAM1
CFL1
RPS2
DNAJB4
FASN
CFD
DDX39B
BMP8B
RPS20
RPLP0
GAPDH
KLF7
HNRNPH1
HYI
NKIRAS1
RPL15
HEXIM2
SLC39A10
LYST
RPL27A
IMMT
C6orf226
H2BS1
TCTEX1D1
DHRS9
HSPB1
H3C12
H2BC3
TOMM20
CIRBP
RPL11
DESI2
TEX30
BAZ1A
RPL5
MEF2D
RPLP1
RNF220
GLUL
ATF4
TUBB
NUDT7
RPS6
FOS
DDIT3
ID2
TRIM25
SLC39A4
BRWD1
CTPS1
CSKMT
C11orf98
CDC20
SLC25A6
H2AZ1
SP9
RPL13A
HSPA5
MACROH2A1
HEYL
RUNX1
RBL1
EIF1
ZNF143
CBX5
HNRNPA1
YWHAG
ZBTB45
RPS8
EFCAB2
HMGA1
PCIF1
H2BU1
H2AW
AGPAT2
AURKAIP1
PTBP1
PDLIM2
TPCN1
IQCD
DPY19L4
ISOC2
GTF2A1
RIMS3
PLEKHM3
SDCBP
KLLN
PTEN
LIN9
RLF
TMSB10
RPS16
SLC16A3
RPL41
FAM43A
CCDC30
ZMYND12
PPCS
ZNF92
H2AC4
FOXD1
PPIF
INTS6
RPS3
COA6
RNPS1
SRSF7
RNF149
ATXN7L2
INO80D
PEX6
MEF2C
ABTB1
SCRIB
FAM133B
RSRP1
GTF2IRD2B
P2RY2
RAD54L2
OARD1
NFYA
ZNF124
COQ8A
TAF1D
C11orf54
RPL24
LMNB1
MAN2C1
CTBS
NCL
P4HB
TP53BP2
NSUN4
TMBIM4
TTI2
LAIR1
LDHA
HNRNPAB
NDUFB3
FAM126B
GMNN
NDUFS7
TCF3
ZFAND5
NOTCH1
KAT7
GLO1
PGBD2
RASSF5
ZSCAN31
RPL8
RPL22L1
ZFAND3
SEC22B
VASP
RPL30
KCNQ4
GSTA4
C19orf48
TUBA1B
VGLL4
TMPO
TMA16
ZNF670
EIF2S2
IQCG
KATNBL1
RPL35A
USP4
SUZ12
COQ2
JUND
RGL2
TOR1AIP1
C17orf75
RBBP5
CHD2
YWHAH
DOCK8
RRM2
MYCL
DDX60L
S100A4
DDX1
MTR
EXOSC3
C12orf57
FOXP1
EEF2
RFX3
CYTH2
PKNOX1
ANXA4
KCTD18
CYC1
COMMD3-BMI1
COMMD3
TUBB6
LAT2
FAF1
RPL3
DDX59
MRPL1
RPL36AL
MGAT2
TBC1D5
SLC25A28
CYP7B1
CCAR2
DCAF12
RPS19
RPL13
DMAP1
NARF
ANKRD40
RPL17-C18orf32
RPL17
CUL7
BAZ1B
RXRA
DEF6
CLTC
LUC7L2
MARCHF7
TRAM2
GPR160
ELOVL1
ERLIN2
REXO5
ERI2
TNRC6B
DENND4B
SUPT3H
COX7A2
SLC9A8
SRCAP
LOC730183
SEPHS2
PMAIP1
EIF2D
PPIH
SMARCD2
ZNF93
MRPL21
IGHMBP2
MLLT11
CDC42SE1
ZNF7
UBE2I
NLRP3
ZNF517
ZNF804A
RCOR3
ZER1
SERP1
EIF2A
TNPO1
KRCC1
PTGER4
KMT5B
KDM4A
SNUPN
NUCB2
SPI1
PEX3
ADAT2
EXOSC6
ZNF787
WDFY1
LDHB
DLX4
PAXX
RPLP2
RPSA
GADD45B
EGLN1
PAIP1
PPP1R27
FOXJ3
ASH2L
GABPB2
RNPEP
SMAP2
IL17RA
MS4A6E
UBB
ELOC
ARL8B
UCP2
AMACR
PXT1
KCTD20
CAPRIN1
NRROS
NCAM2
RPL22
SRSF1
RPL31
TCOF1
CUL9
ELAC1
HAUS4
ZNF22
LZTS2
C8orf82
CYCS
NLE1
ARF6
NOXA1
PDLIM7
FUT4
NSD1
RWDD1
DDX5
CPEB2
SPN
FES
NPM1
DHRS12
REEP3
B3GNT2
FRY
TCIRG1
ATAD2
DCAF10
GPANK1
CSNK2B
CBWD5
CBWD3
DNAJC9
CBWD6
NRL
DCAF11
TUSC1
MRC2
DSTYK
SMG8
PYROXD1
ATIC
H3-3A
ZNF341
UBE2R2
SINHCAF
ECHDC2
APOC2
BRF2
ITFG2
FKBP5
TMEM216
KDELR1
ZC3H6
OAZ1
RPS15A
DHX9
RTL10
GNB1L
CYBC1
GTF2H2C_2
GTF2H2
VPS52
RPS18
VPS28
COX20
NSMAF
CD68
RPS23
ATP6AP1L
DPY19L3
HPS6
NFKBIA
SRF
LAPTM5
THSD7A
LCP1
SRP9
TRA2B
USF1
STIL
PIP4K2B
D2HGDH
ARHGEF2
CCDC85B
UBL7
SLX1B
SLX1A
BOLA2B
BOLA2
BOLA2-SMG1P6
TCTE3
ERMARD
EEF1D
TIGD5
RPL7A
MED22
SRSF10
VRK2
PPIL1
RACK1
EPM2A
SLAIN2
PTER
TIMM13
RING1
APBB1IP
C9orf64
SMG5
ZFPL1
CDCA5
PSMD8
AZIN1
HNRNPU
C1orf53
NLRX1
IRF5
MTRNR2L8
NOCT
ZNF200
SCAF8
RPS7
TSPAN10
NPLOC4
TPM3
CC2D1B
RAB3GAP1
GMEB1
PRTN3
AARS2
MARCHF6
RPL36
VPS29
RAD9B
CRADD
BTBD1
SLC39A1
CREB3L4
CLSPN
FAAP20
S100A6
TOB2
GTF3C3
S100A11
NBN
ZNF76
GEMIN7
EMC4
TCTA
RHOA
ANP32B
ZNF217
NUDT4
VAX2
RTEL1
SRSF6
DMTF1
PPIE
FBXW5
C8G
ZNF107
HES6
ADGRL1
P2RY6
LEMD2
USE1
GNAI2
CLK1
UAP1
TPM4
MSN
UCHL5
RO60
ZNF691
SLC35E2B
OIP5
NUSAP1
HYLS1
SMC4
IFT80
UNKL
COTL1
AHCTF1
DRG2
NUCKS1
TRAPPC4
RPS25
ZWILCH
RPL4
METTL21A
RABGGTB
CAMK2D
ENDOV
MYH9
SLC35D1
DCP1A
R3HCC1
PSEN1
GSDMD
STAT1
BZW1
PARP1
SNAPC3
C6orf89
PCNA
ACYP2
SELENOT
PCBP1
PSMA1
IPP
TMCO1
SAYSD1
TWIST1
SLC22A16
CCNL1
LSG1
CAAP1
HNRNPA3
PRDM10
GPCPD1
RILP
HMGB1
VCP
RBM25
PDE12
PIGW
MYO19
CHEK1
SLC20A1
SREBF1
PLEKHF2
TOLLIP
H4C2
XPOT
TMED5
CCDC18
CHMP6
TMEM117
REEP4
RNASEH2B
HNF4G
CEBPD
BRIX1
PRDX1
SLC39A13
GOLGA3
PDE7A
GOLPH3
RDX
TYMSOS
TYMS
EIF2S3
MUC1
CMTR1
SLTM
GZF1
E2F3
PIM3
RPL36A-HNRNPH2
RPL36A
BTK
CCR1
MRPL40
HIRA
MYL12A
CEBPG
GFI1
GABPB1
TOP3B
CLPTM1L
LSM8
MTO1
LARP1B
DCXR
TPT1
THUMPD3
KEAP1
HYOU1
PTBP3
SMURF2
PNMA1
B4GALT7
SDE2
ATP5F1A
THEM4
CYREN
CHMP4A
OSBPL1A
ZBTB25
ZBTB1
DNM1L
TAGLN2
ENSA
DNAH14
ARFGEF1
SATB1
MYB
PECAM1
USPL1
SNAP47
JMJD4
PYGO2
LOC101928120
ANP32E
EIF4G1
BRPF3
LYN
ZAR1
NXF1
POLR2M
PPP1R35
TRIM27
NOTCH2NLC
EPC1
UQCRFS1
ADGRE5
DGAT1
GRB2
DPYSL2
PROS1
XKR5
TCF12
FDPS
DNAJC25-GNG10
DNAJC25
PET117
KAT14
MCM3
RNF115
POLR3C
COMMD10
LIG3
AIG1
MRPS35
RMDN3
MAN1A2
TBC1D13
DUSP2
FAM168B
BICD2
CIZ1
RBMX
IRX3
SNF8
FEM1B
PHC3
USP22
FOSL1
TKTL1
TEX28
PPP1R15B
CLK3
ANKRD36
PDSS2
RBM8A
B3GALT4
LAT
IRAK3
S100A9
SNX19
ATP6V0B
PEX7
QSER1
KITLG
TEP1
RPL29
MOB4
CNTRL
C5
CYP4V2
SMG9
SCMH1
RNASE2
TRIP4
POLR2J3
KLHL20
GON4L
PHTF1
RABL6
NKX6-3
SYT11
STX18
RPL28
ACTR1B
ACTN1
TRERF1
ATPAF1
GCLM
MOB3A
IZUMO4
RANBP9
N4BP2
MAD2L1BP
TTC14
TMEM68
TGS1
DHPS
RNF6
BCAT1
ARID1A
ATG10
TRRAP
DNPH1
HSD17B11
H2BC10
SSU72
PRRG4
CHMP7
FRG1
RITA1
DDX54
EHMT1
ADAM15
ALG10B
NRDC
PRPF3
PLAUR
HSP90B1
ZBED4
TRIM65
CD58
ARHGEF18
GPR137
BLOC1S6
DBR1
SENP6
WDR70
ANKRD17
ZNF622
WDR1
RCC2
ABHD16A
PARP8
NFE2L2
NAXE
TOR4A
RPP25
COX8A
CHD1L
PRKAB2
EMB
MTRF1
NAA16
DDX23
IFRD2
LAMP1
CTNNB1
FEM1A
COPS7B
CALR3
C19orf44
TMEM41A
TBL3
TIMM21
FBXO15
ABCF2
NCBP2AS2
NCBP2
CALCOCO1
UCKL1
TSNAXIP1
RANBP10
PAFAH2
PPRC1
PPP5D1
CALM3
UNK
GSPT1
TMEM199
POLDIP2
SOD2
NOTCH2NLA
TMEM222
WTAP
WDR53
FBXO45
SPATC1L
CALM1
GATB
CLPB
OPA1
SSNA1
ANAPC2
TSN
CCDC88A
SEC13
TOMM22
SPNS1
CALM2
LRP6
MRM3
GLOD4
ZSCAN22
ORMDL3
NOTCH2
MRTO4
EMC1
NDUFS3
KBTBD4
COPS8
STX16
TIMM22
KBTBD7
NMNAT1
LZIC
CCDC77
BTRC
NUP214
SMN2
SMN1
CNOT1
TMEM115
PEMT
MED23
C16orf91
DOHH
CFAP410
ST3GAL2
KMT2D
POMZP3
CHMP4B
SYMPK
SCAF1
KPNB1
CTDP1
ZNF337
BOD1
AP2S1
PSMD3
TSSC4
IST1
PRCC
AHCYL2
WASHC2C
FOXA3
PNKD
AAMP
SNX17
EIF2B4
ING3
TCEA2
HTRA2
TSC1