ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX20230569 | Ishikawa
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◣ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

CTNNB1
MTF2
TSC1
GFI1B
CKS2
LRP6
GATB
NAGPA
ATAD2
CALM2
SOD2
WTAP
IP6K2
BRWD1
KCTD9
CDCA2
HEXA
NOTCH2NLC
KMT2D
KDM4A
PPP5D1
CALM3
CLTC
CCDC88A
ZC3H6
CCNI
WASHC2A
KPNB1
VCP
CCDC77
KDM5A
PPWD1
CENPK
CYP51A1
CCNL1
NXF1
PDCD4
WASHC2C
SAP30BP
RECQL5
TCF3
PNRC2
CFAP20
KMT5B
CALM1
CNOT1
ARHGEF12
ATG14
NOTCH2NLA
ARRDC4
NOTCH2
DDX23
TOP2B
ZKSCAN2
LAMP1
RPS26
IPO11
SESN3
CCNG2
OGT
DDIT4
GSTA4
SPRED1
TMEM199
POLDIP2
STX18
HEXIM2
UBC
SPNS1
DOLPP1
RBL1
PBLD
HNRNPH3
PIK3R3
TMEM41A
PHIP
POLR2J3
MCU
CYCS
RCOR1
UBE2D3
TRIP4
IDH3B
MRM3
GLOD4
RBM42
NOTCH2NLB
TCF12
UBB
TAF5
COMMD9
AJUBA
SPATC1L
OPA1
IST1
GRHL2
ZNF518A
CCDC59
TRIP12
FBXO36
WDR53
FBXO45
DYRK1B
DIP2A
TRIAP1
AP1G1
TRMO
HMGB1
USPL1
ARNTL
SENP2
WASHC5
NSMCE2
GTF3C5
GABPB1
TMEM242
METTL1
EEF1AKMT3
NCBP2AS2
NCBP2
TOMM22
RPLP1
ATF4
ERAL1
TYK2
ZNF124
NLK
ATXN2L
ENDOV
PAFAH2
CALCOCO1
HAGH
FAHD1
MEF2A
VIRMA
RFX5
FOXJ3
NEURL2
CTSA
MRPL21
IGHMBP2
EIF2D
GPAM
MED23
ITFG2
BLOC1S1
ABCF2
COPS7B
HMGCL
GTF2H3
EIF2B1
MRPL39
TIMM22
PEX3
ADAT2
TET3
MRTO4
EMC1
CDKL3
UBE2B
FUS
SLC3A2
SRSF7
NDUFS7
MCM7
AP4M1
SHBG
FXR2
VPS33A
MRPS35
UBE3B
MTMR2
FAM204A
MAPKAPK5
ALKBH3
MXD4
TROAP
BORCS7
ABT1
ZNF335
NUP214
ING3
C5orf51
JPT1
TOB2
HNRNPAB
PRKACA
TMEM222
MAGOHB
PINX1
SPTLC1
H2AX
HOXD8
SUPV3L1
PRDX1
POMZP3
TBCCD1
DNAJB11
RPUSD4
FAM118B
ZSWIM6
ZNF383
DUS2
DDX28
FEM1A
RCL1
CWC25
ZCCHC4
DOHH
FAM149B1
ECD
SFSWAP
COPS8
FAF1
UBQLN1
RPL22L1
PLK2
PI4K2A
NMNAT1
LZIC
HBS1L
ZNF212
SNRNP70
TIMM21
FBXO15
SMN2
SMN1
SPRYD4
GSTO2
RAP2A
TSFM
HIF1AN
AMD1
WDPCP
MDH1
GPATCH3
COQ7
RTTN
RMND5A
RNF103-CHMP3
POLR3F
DZANK1
ACTL6A
RPLP0
PSTK
TOP3A
SMCR8
NDUFS3
KBTBD4
CDK4
DNAJB12
ITGB3BP
EFCAB7
GOT1
ARL6IP1
PKM
TFRC
G3BP1
MSMO1
STX16
MAGOH
FRA10AC1
CCDC86
MRPL48
NDUFA9
AKAP3
PGBD4
EMC7
HOXD9
USP30
TRMT61B
GHITM
EIF4A2
ZNF571
ZNF540
RPS3
P4HB
ATP5MF-PTCD1
ATP5MF
TMEM217
TBC1D22B
KAT5
HSPA5
PFKM
SENP1
CHCHD1
TOM1L2
DRC3
C12orf73
SSNA1
ANAPC2
RPS28
NDUFA7
ATP5F1B
BRIP1
SLC7A6OS
PRMT7
COMMD4
CCNC
SP2
SPRYD3
SNRPD3
GUCD1
SEC13
TAOK2
CSRNP2
PEPD
SRSF1
RBM48
PEX1
AP3M2
IER5
PAN2
WDR25
WARS1
TFCP2
BAGE4
BAGE3
BAGE
RPP30
SF3B5
C2orf49
SLC25A53
DNTTIP2
CKAP2
PHF5A
ACO2
ATP6V1G1
RANBP6
MED4
TSN
DCP1A
RLF
NDUFB5
MRPL47
TFPT
PRPF31
TSR1
SGSM2
C12orf43
VPS37A
CNOT7
MYLIP
APLP2
SRSF11
LRRC40
CBWD5
CBWD3
DNAJC9
DDX5
TBRG4
PNRC1
CHMP1B
MIS18A
GOSR1
SECISBP2
SNRPC
GTF3C3
POLR1F
ZC3H10
PPP1R8
MFN2
KDM4B
DSTYK
RPS12
TBL3
DGLUCY
RPS6KA5
RAB11A
SNAPC5
AP5Z1
PSME3
GTF2I
UBN1
GLYR1
ZNF8
MRPL58
ZNF2
ISY1-RAB43
ISY1
TACO1
POLR3D
ID2
TMEM230
HSP90B1
ARL15
HERPUD1
PPIL4
DDX46
U2SURP
ZFYVE26
UMPS
SUMF1
SEC62
RANBP2
TBC1D22A
WDR11
GART
RWDD1
MIA3
CUL4A
PCID2
TSPYL2
C19orf48
ELAVL2
PARPBP
NUP37
ATP8B1
VAMP1
SCFD1
CDK11B
RAB5B
AFF1
ZSWIM7
TTC19
COQ9
CIAPIN1
RBM19
ABCB8
MMUT
CENPQ
PRKAG1
PLEKHM3
PTCD3
POLR1A
PPIA
GATAD2A
GIPC1
KHSRP
C8orf33
BRIX1
RPL12
LRSAM1
TULP3
MRPL45
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
ATG7
HAUS5
SPRING1
RNFT2
DNAJC19
ARFGAP2
TFIP11
TSR2
ZBTB4
POLR2A
USP42
LMTK2
FEM1C
MRPS16
ZFAND4
CBWD2
SETD3
CCNK
TMBIM6
LDAH
KDM5C
DPP8
ZNF143
PISD
FAM98B
RPL22
CASC3
KDM2A
LRCH4
FBXO24
RBM14-RBM4
RBM14
RBBP8NL
BRF2
ADPGK
AZIN1
COQ10A
MDM4
DCAKD
NMT1
ZNF721
PIGG
APTX
DNAJA1
ZNF839
NECAP1
RHOB
MRPS11
MRPL46
CDS1
RPL3
PELP1
GTPBP10
XRRA1
SPCS2
SRSF2
MFSD11
AARS2
VPS11
MRPL27
EME1
RASEF
L3MBTL2
H2BC21
H2AC20
H2AC21
NUP54
EIF4B
CIC
TEPSIN
NDUFAF8
ACAD9
OAZ3
MRPL9
GFM1
BMS1
HOMER1
ACOX3
TRMT44
SLC30A6
HSP90AB1
VAC14
MAML3
GINS1
PPT1
ZFAND2A
HMGCR
SRPRA
NOLC1
CTDP1
SF3A3
FANCD2
ADK
ZNF17
ATP5IF1
DIABLO
ZCCHC3
RAD51AP1
C12orf4
NOL10
RPL5
C9orf85
ABHD17B
COA6
CCDC97
BRAP
ACAD10
ZFPL1
CDCA5
KCTD5
SLC26A2
POLG2
FDPS
KDM4D
CWC15
NUP42
SLC24A1
INTS14
FAM133B
NABP1
SLC25A19
IARS1
NRDE2
TBC1D19
VCPKMT
RERE
LAS1L
CDC25C
FAM53C
EIF1
H3-3B
NUP133
LMAN2
ALG10
MVD
TJAP1
CCNH
CRBN
ATRIP
PSMD3
CBWD6
KLHL12
AAAS
LANCL2
NAT10
NDUFV1
PARL
MARCHF8
KRT80
YWHAQ
DHDDS
RARS2
ORC3
ATP9B
TMEM208
LRRC29
RFXANK
BORCS8
TANK
SRSF6
KAT7
TOMM40
OXNAD1
DPH3
SKP1
UBR4
RBSN
TMEM126A
DMAC2
UGP2
CSKMT
C11orf98
HNRNPL
MRPL37
CYB5RL
TMEM94
RPL28
SLIRP
ALKBH1
IL4I1
H3C2
NUP62
ATF5
DDX41
MRPL55
UHMK1
ZNF56
DR1
RPL13A
CRLS1
COPZ1
YPEL2
TDG
COMMD2
NUFIP2
PPFIBP1
TSNAXIP1
RANBP10
TTC13
CHCHD6
TIMM17A
TRAPPC8
SLC25A3
ATF3
AP3S2
DDX50
KLLN
PTEN
CALR3
C19orf44
WDHD1
SOCS4
CLTCL1
MNAT1
ANKFY1
MRPS22
PSMB7
CCT2
FREM2
ALG1
HPS4
SRRD
ZNF444
RPTOR
RETSAT
MTMR4
ATR
TAF6
CNPY4
PALB2
DCTN5
PCDH9
NUF2
ADNP
MAP3K13
CCN1
ZWINT
EIF4A1
EIF4A3
NUP107
SLC25A26
SAP18
PEX26
RCOR3
PTP4A1
HMBOX1
INTS9
TBC1D23
MANF
ATP6V1C1
THOC1
HTRA2
PA2G4
LEMD3
SACM1L
POLG
BCAR3
ZNF574
IMPDH2
PACSIN2
UBALD2
SKA2
PRR11
IFRD2
RBM28
SCAF11
CHD4
TMEM128
COX10
DCAF10
HDAC4
DNM1L
TDRKH
GID4
ATPAF2
TRA2B
MIS12
DERL2
H1-4
RAD52
ARF4
SEL1L
ARL14EP
GSPT1
TEFM
TPR
ODR4
MFSD1
SMPD4
MZT2B
SRP9
HGS
ARL16
LARS2
SPTY2D1
CBX5
HNRNPA1
POLR1H
BRMS1
C12orf57
HMGCS1
CAT
MRPS15
PTPN4
RPS2
GADD45G
NOL11
ASF1B
MRPS31
ERCC5
DCAF8
NBPF1
METTL9
MAN1A2
SCAMP3
PANK2
FAM156A
FAM156B
DCP1B
GMFB
NARF
NDUFA12
TMEM254
HMBS
C16orf91
TIMM50
MTHFD2
BTG1
NME1-NME2
NME1
CALR
TNKS
SLC25A42
SMIM13
KANSL2
ELOVL5
TRUB1
YEATS4
HSD17B12
POLE3
C9orf43
MRPL44
TCERG1
EIF5
ACSL3
RRBP1
OTUD5
NUS1
FAM76B
CEP57
LGMN
TOX4
RAB2B
ZBTB45
FAM126A
CREBL2
USP15
MXI1
MRPS18B
AAR2
EPG5
TRIP11
NSRP1
TMPO
RTN4IP1
QRSL1
TTC4
ASH2L
F11R
PKN2
CBWD1
XPO1
THUMPD1
AASDH
HUS1
ADAT1
RAD18
ADARB1
COMMD1
CCT4
C6orf226
TCAIM
PHF1
GTF2H2C_2
GTF2H2C
NDUFC2-KCTD14
NDUFC2
MPV17L2
LTO1
RAB4B
TCTE3
ERMARD
GOLGA3
ELF2
DCAF1
VDAC2
EEF2
TNPO1
SKIV2L
NELFE
THRAP3
ANKRD17
CCDC130
FAM227B
DTWD1
MARK3
ATG16L1
PNP
SARAF
DDX19A
ATP5MC2
SSU72
PSMD7
RPS20
MRPS23
SLC35B1
VCL
ELAC2
NCAPH2
LMF2
SLC2A1
SH3GL2
PHKG2
TUFT1
SNAPC3
PDCD6IP
TTI2
NOP58
YIPF6
STARD4
GET3
SDHB
ABRAXAS2
DDX47
NRAS
HOMEZ
SLC30A1
MCCC1
INTS6
RPS16
VPS4B
PRTG
CHMP4A
EEF1AKNMT
CDH1
BOD1L1
SLC33A1
OAT
MAGEA3
ATP6V0D1
EEF1E1
EXT1
CNIH3
HSPE1-MOB4
HSPE1
HSPD1
METTL17
FDFT1
MAML1
NCL
PCBP2
AMOTL2
CWF19L1
ZNF337
RPL11
PMPCA
ENTR1
HPS5
GTF2H1
SRSF3
TRIM26
ZSCAN22
SNRNP200
TAF15
CCDC43
RBX1
PCNA
DYNLL1
TMEM256
API5
UBIAD1
ZNF687
POGZ
TFB2M
CNST
AARSD1
EIF3D
TMEM203
NDOR1
EXOSC8
UTP15
ANKRA2
SMIM10L1
PRH1-TAS2R14
RANBP3
NDUFB6
STOML2
SSR3
MYH7B
GSS
WDR4
DDX1
MRPL3
OSBP
TIMM44
TFDP2
TXNIP
PPP2R5E
PPP4R3A
TMEM170A
HDAC6
C5orf15
BDP1
RBM22
LSM5
CYLD
ZNF148
MRPS7
GGA3
DDT
IRGQ
ZNF576
CACTIN
TBCB
POLR2I
FAM83D
ZNRD2
EMSY
ALG10B
ATAD3B
ST7L
CAPZA1
SMG5
MTRR
FASTKD3
REXO4
WDR6
DSE
TSPYL1
XAB2
FDXR
MRPL10
LRRC46
CNOT3
HSD17B7
UBXN1
SRCAP
LOC730183
EXOSC3
CCT8
RPLP2
XPO4
RBM25
DENR
COPS7A
RFX1
CDKN2B
STK19
DXO
DCTN4
DNAJC11
DNAJB1