ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX20230573 | Ishikawa
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◣ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

MTF2
CTNNB1
PPP5D1
CALM3
CCDC88A
RCL1
CLTC
MCU
SLC44A2
NOTCH2NLC
FOXJ3
LAMP1
MRM3
GLOD4
IP6K2
TMEM41A
MRPL21
IGHMBP2
NOTCH2NLA
CYCS
CKS2
ATAD2
SOD2
WTAP
ZC3H6
ATP8B1
KDM4A
RASEF
HEXA
CCNL1
PHIP
DIP2A
ATG14
STX18
PNRC1
FAF1
PNRC2
DDX23
WASHC2C
NOTCH2
GRHL1
CALM1
HEXIM2
SEC13
UBE2D3
ZFAND2A
SPNS1
HMGCL
IST1
NXF1
BRWD1
DOLPP1
NAGPA
LRP6
KCTD9
CDCA2
POMZP3
MAPKAPK5
EIF2D
TET3
TRIP4
NUP214
CALM2
KPNB1
NOTCH2NLB
GPAM
TRIAP1
POLR2J3
NCBP2AS2
NCBP2
KMT5B
SESN3
PBLD
HNRNPH3
ZKSCAN2
WASHC2A
TSC1
GFI1B
CDKL3
ZNF212
UBE2B
MRTO4
EMC1
COPS7B
ADNP
TCF3
IPO11
TRIP12
FBXO36
TMEM222
TOMM22
PINX1
DOHH
TSPYL2
KMT2D
WDR53
FBXO45
MXD4
SMN2
SMN1
VCP
PKM
NMNAT1
LZIC
ARHGEF12
DDIT4
MTMR2
STX16
TAF5
TBL3
CYP51A1
COPS8
ABCF2
GRHL2
PEX3
ADAT2
MCM7
AP4M1
NOC4L
DDX51
SPRED1
PEPD
SPATC1L
SRP68
TAOK2
TIMM22
PDCD4
CNOT1
CANT1
OPA1
DYRK1B
GTF3C5
TSN
SSNA1
ANAPC2
ERCC1
ADPGK
ZNF721
PIGG
SPRYD4
DCP1A
NDUFA10
SMAGP
PIK3R3
TOP2B
COQ7
SPTLC1
FUS
SNRNP70
CLCN7
YPEL2
ZFPL1
CDCA5
RPS28
NDUFA7
AJUBA
TMEM242
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
MRPL58
HOXD8
TAS1R1
NOL9
SLC7A6OS
PRMT7
WDR25
WARS1
WASHC5
NSMCE2
VIRMA
TRMT61B
TXN2
RCOR1
MRPS35
C8orf33
GTF2H3
EIF2B1
PI4K2A
NSFL1C
MYLIP
KLLN
PTEN
KAT8
ENDOV
MED23
TMEM199
POLDIP2
DCAF8
RPLP1
SUPV3L1
SRSF11
LRRC40
EIF4A3
HNRNPAB
ARF4
CFAP410
RBM42
MANF
DNAJC11
PRKACA
UBQLN1
HPS4
SRRD
MRPL39
CCDC77
KDM5A
MOB3A
IZUMO4
TIMM21
FBXO15
LTBR
SPRYD3
MED4
TOB2
ACOX3
TRMT44
COMMD1
CCT4
USP30
DNAJB12
DNAJA3
DUS2
DDX28
ADK
ATRIP
HMGB1
USPL1
SRSF1
MEF2A
VPS37A
CNOT7
TCF12
KCTD5
GTF3C2
ZSWIM7
TTC19
PHAX
IDH3B
RPP30
UBC
CHCHD1
MRPL4
GMFB
RFXANK
BORCS8
TIMM50
VPS33A
HBS1L
C5orf51
NEURL2
CTSA
ZC3H3
TENT5C
ATXN2L
MFN2
OAZ3
MRPL9
NLK
CDK4
MARCHF8
PSMD3
BLOC1S1
CRBN
ACSL3
ALKBH3
FANCD2
ZNF124
COG2
DPP8
COQ9
CIAPIN1
NABP1
ARFGAP2
DSTYK
CUL4A
PCID2
PRKCZ
FRA10AC1
ZNF518A
UBN1
GLYR1
CRYBG2
BRF2
GNB2
PRTG
NFATC4
KDM4B
HIF1AN
DDX19A
HSP90B1
CLN8
TSR2
PARPBP
NUP37
CCDC86
CASC3
JMJD1C
USP42
GATAD2A
FAM76B
CEP57
HSP90AB1
TMEM217
TBC1D22B
NDUFAB1
NOL10
ARRDC4
GHITM
TFRC
LAD1
EXT1
TOB1
ARNTL
CHMP1B
MRPS11
MRPL46
MIDEAS
POR
ADPRS
GIPC1
PARL
HEBP2
CBWD2
TOP3B
FAM207A
CCNG2
TSR1
SGSM2
GABPB1
ZFAND4
APTX
DNAJA1
VAMP1
PACC1
ATG7
TIGAR
HAGH
FAHD1
MAGOH
MON2
DDX1
REXO1
ATP5MF-PTCD1
ATP5MF
THRAP3
TIGD6
HMGXB3
RARS2
ORC3
DPP9
PMPCA
ENTR1
PLEKHM3
ANKFY1
TBCB
POLR2I
TBRG4
EIF4A2
RPS16
UBB
NDUFS3
KBTBD4
MRPS15
MRPL37
CYB5RL
MCCC1
NDUFS7
TTC4
METTL9
TJAP1
MVD
SDHB
NDUFV1
PALB2
DCTN5
SHBG
FXR2
SSU72
CCDC43
RASGEF1B
UBE2S
TARBP2
BRAP
ACAD10
SRPRA
YIPF6
ACAD9
HAUS5
AURKAIP1
VAC14
TFDP2
RERE
AMD1
RAD54L2
NBPF1
RLF
GCN1
POLR3F
DZANK1
JPT1
H3-3B
WAPL
RPL3
SENP2
PSMF1
CSRNP2
SFSWAP
HTRA2
CDC25C
FAM53C
C12orf73
BRIX1
HERPUD1
MALL
ECSIT
SMIM12
RTF2
FAM133B
GOLGA1
ERAL1
VDAC2
IER5
PRDX1
MARK3
TRMU
AP5Z1
LRRC37A3
TMEM9
CFAP20
FAM149B1
ECD
RPS6KB2
RANBP2
UQCRC1
PELP1
DCAF10
PTPN4
IFRD2
PFN2
PSTK
SMG5
ZGPAT
ARFRP1
COA6
SCFD1
POLR3D
CNP
NABP2
TBCCD1
DNAJB11
SARAF
CMTR1
DPY19L4
FAM204A
SAP30BP
RECQL5
TSFM
ZW10
GGCX
SECISBP2
CBWD5
CBWD3
CBWD6
MTHFD2
MED9
DIABLO
TMEM126A
TNKS
GTF2H2C_2
GTF2H2C
RBSN
SP2
PPP1R8
UMPS
ZFAND5
PLCXD2
ABAT
WDR11
PHF5A
ACO2
TSR3
GNPTG
SLC35F5
NFKBIZ
ATXN2
ZC3H10
RPUSD4
FAM118B
SNAPC5
ALG1
GID4
ATPAF2
SART1
ULK2
CDKN2AIPNL
MRPL55
ZNF770
EEF2
VCL
SLC25A4
NOC2L
CIC
PKN2
RMDN3
PFKM
SENP1
TIMM44
MICU2
LTO1
DNAJC25-GNG10
DNAJC25
AMOTL2
RABGAP1
TMEM254
ZNF574
CENPBD1
TMED2
AARS2
NUP160
DGLUCY
RPS6KA5
WDR43
PBRM1
GNL3
PA2G4
CABIN1
CCDC134
DCAF1
TEFM
ATF4
SLC3A2
TOP3A
SMCR8
ETV5
TRMO
ATP5F1B
NUP188
DOLK
TULP3
PPIL4
CBWD1
OSCAR
NDUFA3
RBM25
WDR6
MRPL20
PPP4R3B
LONP1
CATSPERD
ZC3H15
SLC25A26
CALR3
C19orf44
THOC1
CZIB
MAN1A2
H2BC21
H2AC20
H2AC21
RAD23A
UBAP2
PPWD1
CENPK
GTF3C3
BOD1L1
TMEM203
NDOR1
TVP23B
GSTO2
OAZ1
PSMD2
RBL1
TAF15
BRMS1
COQ10A
PGBD4
EMC7
ZCCHC4
TROAP
MRPL48
TMSB10
CHSY1
WTIP
MPHOSPH10
MCEE
ZER1
PPP2R3B
EXO5
HOXD9
ZNF839
PPP1CC
ANAPC11
ALYREF
ZNF148
OXNAD1
DPH3
ARL6IP1
FAM156A
FAM156B
DDX46
HNRNPL
GTF2I
TMEM248
NDUFB5
MRPL47
ATP5MPL
ID2
YWHAQ
XPNPEP3
ST13
CDH1
SMPD4
MZT2B
UBIAD1
LMTK2
GART
CFAP43
GXYLT1
MDM4
SRSF6
HGS
ARL16
FPGS
TFIP11
EXOSC8
RPL22
SUMF1
RWDD1
WDHD1
SOCS4
MCAT
ARAP2
EID2
H2AX
ZNRD2
CCDC97
NUP93
PSME3
TSNAXIP1
RANBP10
RNF121
LOC100133315
C18orf32
EED
HMGCS1
C19orf48
HPS5
GTF2H1
POLR2C
EFCAB14
FBXW2
PEX26
CDK11B
ETNK1
UBE2D2
SC5D
STOML2
RRBP1
SKA3
MRPL57
KIAA0232
MSMO1
TAF6
CNPY4
RPL8
DNAJC19
YIF1A
ABRAXAS2
DENR
RCE1
C6orf132
VCPKMT
SEC62
SULT2B1
RRP7A
DRG2
IDI1
ELF2
GTF2IRD2B
STYXL1
OGT
EDF1
PHKG2
TACO1
EXOSC3
NME6
CHUK
SAR1B
SENP5
LDHA
SLC35A3
PSPH
CCT6A
DYNLL1
PPT1
GEMIN7
B4GALT7
TSEN15
ZSWIM6
ABCB8
EFTUD2
CCDC103
NOCT
GARS1
DNAJC9
LRRC59
PLK2
MAML3
GOT1
KDM3B
LRCH4
FBXO24
SDE2
NUS1
ZBTB45
PPARD
KAT5
CCNL2
RAD50
FBXO31
MAP1LC3B
ATP6V1C1
ORMDL3
TMEM256
IL4I1
NUP62
ATF5
SLC33A1
EIF5
UBR4
CUTC
COX15
TUBGCP6
SH3GL2
SURF6
DCPS
MACROD1
TNKS2
IARS1
CCNC
TFCP2
THUMPD1
EIF3F
SLC25A38
PSMD12
ZDHHC5
SLC9A3R1
MOB4
TAF3
WSB1
GADD45G
UBE3B
UCP2
NOC3L
RUVBL1
EEFSEC
C17orf75
TRIP11
MRPL38
SNX19
POLR2J
FAM227B
DTWD1
GATB
RPSA
MRPS16
VPS11
STK19
DXO
PCNA
TEPSIN
NDUFAF8
DDX41
CCNI
TMED9
SNAPC3
ITFG2
RNF166
CTU2
NUF2
UHMK1
METTL1
EEF1AKMT3
RPS3
ERI1
ATP6V0D1
FAM122A
TBC1D22A
SRP9
PNPT1
TAF1B
XPO4
METTL2B
CTDP1
COMMD9
RPL29
SNRPD3
GUCD1
KLHL11
ZNF292
TSPAN10
NPLOC4
PABPC1
NDUFC2-KCTD14
NDUFC2
HNRNPUL2
TTC9C
PLAG1
CHCHD7
HSPA5
TMEM104
NAT9
C16orf70
COMMD2
MAN2C1
PLEKHH3
USP14
KCTD11
XRRA1
SPCS2
GRAMD2B
SYBU
DNAJC27
LIPA
C16orf91
NOM1
EIF2B5
SLC24A1
INTS14
ATAD3B
SETD1A
GOLGA3
CRCP
RBBP8NL
ICE2
LTV1
DNM1L
SUGP1
MAU2
STAT1
TOMM6
EDC3
TATDN3
NSL1
TCP1
MRPL18
UBE2V2
CTNNBL1
SKIV2L
NELFE
ZNF384
THOC3
FEM1C
IVD
RCOR3
HMBS
ASH1L
NOL11
RRN3
NAGK
C16orf95
USP15
KPTN
TFB2M
CNST
LRRC57
HAUS2
API5
CD46
ATR
CPSF1
H1-4
ZNF326
TPT1
TTK
RPAP3
TYK2
QRICH1
TMEM183A
CCDC59
PSMD8
ZCCHC3
SYCE2
FBXL12
SNAP47
JMJD4
UBALD2
MCOLN1
YEATS4
MRPL10
LRRC46
C6orf226
MSTO1
SLC38A2
SOX12
PSMD7
CEP20
ANKRD36C
CCAR2
PGS1
TUSC2
RPL28
PPIA
NCAPD2
MRPL51
DIP2B
FAU
UNK
SEL1L
RANBP3
IQCG
LMLN
POC1B-GALNT4
GALNT4
ASH2L
LIG4
ABHD13
GFM1
HEMK1
CCDC34
SMIM13
C12orf57
GPS2
ANXA7
PHF21A
C5orf24
ANXA2
WDR4
PCBP2
PISD
KLHL25
CACTIN
SIVA1
ARL8B
ZNF8
WDR61
TRUB1
FREM2
EPRS1
SNX13
FBXO21
FOCAD
TRA2B
HEATR5A
ZNF775
RPL6
HUS1
ZNF383
PTPN11
TMEM128
ANKRD36
EHD4
TTLL5
ERG28
SCN11A
WDR48
GTF2H2
PTCD1
CPSF4
BSDC1
ZSCAN22
CHCHD6
RPL5
RAD9A
HDAC6
MKRN2
PITHD1
PDCD6IP
COPS7A
AGK
KATNBL1
TCTE3
ERMARD
DDX50
MYH7B
GSS
SUCO
H1-10
XBP1
DDX5
TAGLN2
WIPI1
NARF
PITRM1
SLC11A2
POLG
TTC8
CCT2
VPS53
FTH1
TUBB2A
MIS18A
RPL13A
ITGB3BP
EFCAB7
FDPS
R3HDM2
SNRNP25
POLR3K