ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9730735 | THP-1
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◣ SRX9730735: THP-1

◢ CDK9: STRING

PABPC4
UBC
H1-3
H4C6
WDR74
NFYC
SLC3A2
H1-2
H4C11
H4C3
ZNFX1
SRSF3
H4C12
EGR1
H2BC18
H3C13
H4C15
H4C14
YBX1
ZMPSTE24
HSP90AB1
H3-2
MAT2A
CITED4
KLF7
DALRD3
NDUFAF3
EIF4A2
EEF1A1
H2BC21
H2AC20
H2AC21
RPL10
H3C2
H1-10
EIF1
ZFP69
TUBA1B
RPLP0
EXO5
ID1
SRSF7
EIF4A1
SIRT4
H4C1
H3C1
PPIA
HNRNPAB
CTPS1
RPL10A
H2BC8
H2AC8
MCL1
H2AX
FUS
TRIT1
ZBTB37
RPL12
LRSAM1
TXNIP
JUNB
SLC39A10
AMD1
CCDC30
ZMYND12
PPCS
H2BC6
H1-4
H2BC5
CFD
SLC16A3
ZNF124
H3C3
FASN
PABPC1
H4C9
H2BC12
H2AC12
TRAF7
ID2
GPX1
TUBB4B
MRPS18B
DDX39B
DDX5
RPS27
PNP
CSKMT
C11orf98
TIMP3
NASP
SEPHS2
H2BC11
H2AC11
HSPB1
ATF4
P4HB
MS4A7
HNRNPH1
CA2
CALR
SRSF2
MFSD11
H3C7
H2BC9
H4C8
TNFSF9
FTL
S100A4
H3-3B
LAPTM5
RPS3
PRRC2A
RCC1
NFKBIA
EEF2
PTMA
ZBTB4
POLR2A
CBX3
HNRNPA2B1
RPL13A
PARP2
NCL
HMGB2
CEBPA
H2AZ1
TKTL1
TEX28
REEP4
ZNF669
DNAJB4
RPL5
H3C8
TUBB
PPIF
ZFP36
H4C4
FOS
C19orf48
ATAD2
RPS20
RSRP1
GLUL
SMAP2
RPLP1
PFN1
TRIM27
H1-0
ZNF670
RRM2
INO80D
POLDIP3
C6orf62
CIRBP
IL4I1
NUP62
ATF5
TAF1D
C11orf54
ZNF93
RPS8
PCIF1
TMSB4X
H2BC3
RBM14-RBM4
RBM14
PCBP2
H2BC4
H2AC6
CAP1
CITED2
ZC3H10
RPL41
GRB2
CDC20
CFL1
H3C15
H3C14
H2AC19
H2AC18
MFSD2A
RBMX
ST3GAL3
MBNL1
MYH9
H3C11
HSPA8
VPS29
RAD9B
PPT1
RPS6
H2BC15
H2AC15
SLC25A6
SLC38A2
VPS52
RPS18
HMGN2
EIF5
TASL
YWHAH
S100A13
CHTOP
GBA
COQ8A
AHCTF1
MTO1
INTS6
ACTN1
RNF220
SVBP
ERMAP
LUC7L2
H2BU1
H2AW
NSD2
LMNB1
TUSC1
IBA57
H4C5
ANKRD13D
H4C13
CYCS
TUBA1C
RPS23
ATP6AP1L
ZNF438
MARCHF7
RPS2
C6orf226
VASP
PPIE
LDHA
CBX5
HNRNPA1
RPS16
JMJD1C
USP4
HEXIM2
SDE2
TRA2B
GDI2
GLO1
SELENOT
NPM1
HYLS1
FAM200B
PRKCD
RLF
PEX6
CTBS
E2F3
SRGN
WSB1
SRSF6
H2BC17
H2AC17
HSPA5
PDLIM7
LMNA
PTBP1
GTF2A1
ZNF684
CLTA
TRIM28
C12orf57
PTGER4
DDX59
DPYSL2
ZNF92
OARD1
NFYA
RPL3
TPM3
DENND4B
TP53BP2
GAPDH
H2BS1
LAT2
IRF1
DESI2
SRP9
TEX30
H1-5
H2AC16
ADAMTS1
SPI1
DDX3X
AGPAT2
ANP32E
NSMAF
H2BC13
H2AC13
H3C10
ARF1
RPS29
HMGB1
VPS28
ELOC
ZNF143
AZIN1
SZT2
MED8
IRF8
BZW1
H2AC4
CYBA
H3C12
TBCC
BICRAL
COX18
FOSL1
SRSF5
FOXP1
SF1
MEF2D
ZSCAN31
DDX19B
AARS1
TRIM11
SMURF2
LOC730098
MATR3
GPANK1
CSNK2B
KIF5B
TMBIM4
NDUFV3
CCNL1
EIF4G2
NLRX1
ZNF691
PDCD6
SRSF10
MACROH2A1
CALM2
CLSPN
DCAF12
RPL7A
MED22
H3C4
SLFN11
RPL17-C18orf32
RPL17
PMAIP1
FAM133B
RFX3
RPS10-NUDT3
RPS10
TARDBP
TAOK1
ZWILCH
RPL4
PKMYT1
CGAS
MIA3
TMEM69
GPBP1L1
NCOA5
GABPB2
ZNF672
ABHD16A
ANP32B
LAIR1
ZNF274
MLLT11
CDC42SE1
ENO1
PBLD
HNRNPH3
ZFAND3
TFRC
RPS3A
TPT1
UHRF2
ZC3H6
NUCKS1
MSN
SLC20A1
SCMH1
RPS15A
ATP6V0B
HNRNPA3
RNASEK
RPS19
ADPGK
MCM7
AP4M1
TOMM20
CAPRIN1
RPLP2
KHDC4
RELT
RPL30
RPL32
METTL21A
TCTEX1D1
UBE2D3
CC2D1B
SLX1B
SLX1A
BOLA2B
BOLA2
RPL23A
IMP3
OAZ1
GMNN
LDHB
UNKL
RING1
CCDC137
FUCA2
ZNF253
BAZ1A
GTF2IRD2B
JUND
NLRP3
CHST11
SLC22A16
HNRNPUL1
CLK1
SGK3
ZC3H4
SART1
ZNF451
MAN2C1
ZCCHC3
CYC1
NKIRAS1
RPL15
EDF1
ARF6
BAG6
ZFP69B
RABEP2
P2RY2
GADD45B
TPM4
NIPAL2
H3-3A
MAPK14
UBA52
HSPA9
ARHGAP35
RPS12
FOXD1
ZNF273
STIL
NACA
FBXO4
SREBF1
ERLIN2
PAK2
UBE2I
LEMD2
UBE2L3
XKR9
LACTB2
S100A11
GPR160
MYBL2
RPL8
ZFAND5
PCLAF
CHI3L1
DPP8
UCHL5
RO60
CCSAP
SP9
TOB2
TMPO
NARF
SLC25A3
CEBPG
MYC
MDM4
NBN
ATXN2L
RPL27A
COQ2
LAT
EFCAB2
UQCC3
LBHD1
RCC2
RPL21
H4C2
MYLIP
CYBC1
FBXO5
REXO5
ERI2
PRR12
ACTB
NCOR1
PIGL
RBM12B
TOR4A
TCTA
RHOA
NSRP1
GOLPH3
UBAP2L
C1orf43
NRL
PCK2
RPS27A
CLHC1
HSP90AA1
PSEN1
TPCN1
IQCD
ILF3
NOP58
ZBED4
QSER1
CFLAR
DNAJC1
MRC2
H2BC7
H2AC7
CTNNB1
RPSA
RPL26
PYM1
RACK1
RUNX1
PKNOX1
HNRNPU
PPIL1
STMN1
TAGLN2
DUSP28
ANKMY1
SREK1
PDE7A
NUDT18
PDCD6IP
TMED5
CCDC18
SLTM
PPP1CC
PUF60
SUPT3H
HENMT1
SLC25A5
HSPE1-MOB4
HSPE1
HSPD1
TRIM13
HNF4G
TRAM2
MYL6
IPP
FADD
RNPEP
FSCN1
PECAM1
SLC1A5
RC3H1
YWHAG
MYL12A
RPS26
BOLA2-SMG1P6
SRCAP
LOC730183
MOB4
GMEB1
DNAJB1
RMI1
HNRNPK
RPL23
TRAPPC4
RPS25
ADGRE5
BVES
RHOB
POLM
NRROS
ELANE
NFX1
CELF2
KAT7
NRDC
PPP1R15B
RPL36AL
MGAT2
ACTR2
ZNF131
DDX50
DHPS
RIPK1
RXRA
EZH2
DHX9
ARHGEF2
GRK2
STARD7
EIF2S2
RBM25
TSPAN10
NPLOC4
NUDCD2
HMMR
POLG
SACM1L
EIF3A
SDCBP
H2BC14
H2AC14
ARF4
WDR4
HNRNPL
MRPL12
CEP192
TBRG4
TPI1
ATXN7L3
RPL18A
ZNF200
GNAI2
ZBTB25
ZBTB1
MS4A6A
TRIM52
UCK2
RABGGTB
SERP1
EIF2A
DOCK8
DNPH1
IRAK3
PTPN7
C9orf85
ABHD17B
RGS16
IL17RA
LYN
PKM
PNRC2
TOE1
MUTYH
JTB
HDGF
C16orf72
PAIP1
NSUN4
YTHDF3
RAC1
PRCC
KLLN
PTEN
KRCC1
HNRNPDL
SMIM19
SLC20A2
ZNF280D
CKS2
TCERG1
WDR37
HSPA4
ANXA5
ABTB1
GABPB1
SNRPD1
RPS15
TRIM25
KLF10
BCOR
SPHK2
RPL18
TOMM6
UGP2
IMMT
RBM8A
STT3B
ZNF700
C9orf64
RPL22
CANX
ALDOA
CSE1L
LSM8
CENPC
RIC8A
BET1L
TYMSOS
TYMS
NOCT
ETFRF1
CFAP94
FAM43A
NNT
AVEN
KCNQ4
SFT2D3
RNASEH2B
DDX60L
TAPBP
MAZ
SUMO2
YWHAZ
DDX39A
MTCH1
DYNC1H1
SQSTM1
SMARCB1
ACOT2
SRSF1
C2orf69
LAMTOR1
RBBP6
WDR82
HMGA1
PPP1R15A
ELOB
C12orf65
MOB1A
GTF2IRD2
MSH6
GATAD1
DDX17
RNF135
SPPL2A
TGFBRAP1
BRPF3
PFKL
COPS3
PUM1
LOC100287896
LIPT2
COX7A2
SINHCAF
HYI
PLK4
SMIM27
ATL3
TOPORS
SCAF11
CUL7
CPT2
ERV3-1-ZNF117
ERV3-1
MAD2L1BP
GTPBP2
NUDT15
ANKRD54
EIF3L
MFSD14B
SNRPG
MKNK2
C17orf75
HNRNPA0
DDIT3
CARD9
ZKSCAN2
TUBGCP3
STAT1
ADAT1
SF3B3
COG4
WDFY1
UBA2
N4BP2
DIP2A
PRDX1
CDC37L1
PPIH
RPL28
GGNBP2
NDUFB1
CPSF2
AFG3L2
PTER
PPDPF
CD164
YRDC
C1orf122
ANAPC7
LRIF1
ORAI3
PSMB8
IDH2
MTF2
GTPBP4
HMGN1
AZU1
PSMD8
RBM12
CPNE1
GMIP
THSD7A
TMEM203
NDOR1
SFPQ
EIF4B
SKIL
PI4KB
ODC1
MSRA
USPL1
P3H1
FAF1
VDAC2
MBD4
IFT122
CREBZF
TBL2
SELENOH
CYTH2
BNIP2
RPN1
PCF11
STXBP3
XPOT
CCT7
KATNBL1
YWHAB
EPC1
YWHAQ
MORF4L1
ACBD6
CLK4
SLC38A10
BLM
RAB5IF
ATP5F1A
E4F1
ZNF623
SEC16A
LRRC8D
C9orf163
CCNG1
BMP8B
WDPCP
MDH1
BMS1
BUB3
VCP
DNAJC9
POLR2M
GTF3C6
METTL23
JMJD6
SYK
PHTF1
B3GNT2
BRWD1
CCNA2
KCTD18
WARS2
ZNF518A
ERBIN
CORO7-PAM16
CORO7
MTHFD2
PNN
C1orf53
CDK12
HNRNPF
CHKA
INPP5D
RPL13
LIN9
FAM161B
COQ6
CSDE1
ATP13A1
ZNF717
MTIF3
NDUFA6
LIG3
BACH1
IPO9
SAP18
PYCR2
RAF1
BRD2
PLEKHF2
WDR5
TMEM59
RAB7A
ZNF24
MDM2
ATP6V0C
RPS11
VPS36
ZNF320
SNX19
GNAI3
GTSE1
VARS1
ZYX
FAM131B
ILKAP
RASSF7
LMNTD2
ALDH2
LCP1
LSM5
CYREN
AVL9
PARP1
COMMD3-BMI1
COMMD3
NUP54
TTI2
RPL36
HECTD2
CHMP5
BAG1
USP22
ELOVL1
CARD19
POLR2J3
CHCHD2
ECHDC2
PLAC8
RPL37A
CHMP4A
MRPL15
HNRNPC
DUSP3
KPNA2
ZNF22
RPL36A-HNRNPH2
RPL36A
BTK
MAPK1IP1L
FLI1
C5orf24
TRIB3
CEP63
ANAPC13
KDM3B
EIF4G1
ZNF850
NFU1
TMEM267
SHCBP1
RDX
COTL1
MRPL48
SNX5
MGME1
CSNK1A1
ATP5MC2
KMT2E
PHC3
KIFC1
TBX18
RPTOR
ADSS2
MMAA
SAE1
AHNAK
ATP2A2
CPEB2
POGLUT3
ZNF66
CLEC11A
FOXJ3
GART
RPL38
UHRF1BP1
MSRB2
RBL1
TOR1AIP1
BANP
SUCO
RPL22L1
SLC39A7
RXRB
PDLIM2
B2M
ZNF121
HLA-E
DCUN1D1
MAP10
NABP1
ACSL3
ACAP2
COX8A
SIGMAR1
PPP2CA
HAUS4
ARFGEF1
RCOR3
EIF3B
LRR1
GPATCH2L
ZNF217
RPL35
ARPC5L
ETNK1
RPL31
USP40
RITA1