ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX20230571 | Ishikawa
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◣ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

MTF2
CTNNB1
CKS2
PPP5D1
CALM3
VCP
TSC1
GFI1B
ARRDC4
KDM4A
IP6K2
SOD2
WTAP
DDX23
CLTC
CYCS
LRP6
NXF1
GATB
PDCD4
CALM2
DOLPP1
ATAD2
LAMP1
NOTCH2NLC
SESN3
HEXA
NAGPA
CFAP20
CALM1
PHIP
SAP30BP
RECQL5
CNOT1
MCU
KCTD9
CDCA2
CCDC77
KDM5A
KPNB1
ZC3H6
CYP51A1
KMT2D
ZNF124
BRWD1
TCF3
ZKSCAN2
TMEM199
POLDIP2
PPWD1
CENPK
SPNS1
TOP2B
SENP2
RPLP1
ARNTL
WASHC2A
MXD4
TSPYL2
CCNL1
ATG14
DYRK1B
RBM42
TYK2
IPO11
CCDC88A
POLR2J3
KMT5B
WASHC2C
HEXIM2
DDIT4
KDM4B
TAF5
MSMO1
RBL1
PRKACA
NLK
HSP90B1
MRM3
GLOD4
SPATC1L
TRMO
PNRC2
PBLD
HNRNPH3
ZFAND2A
SLC3A2
NOTCH2NLA
TBCCD1
DNAJB11
CCNI
TROAP
PIK3R3
DOHH
PI4K2A
CCNG2
NOTCH2
TDRKH
HNRNPAB
TOMM22
NUP214
DIP2A
GATAD2A
ENDOV
GABPB1
ABCF2
SPRED1
COQ7
VIRMA
IST1
TOM1L2
DRC3
MRTO4
EMC1
ARHGEF12
RCOR1
FOXJ3
PRDX1
ZNF518A
RCL1
UBE2D3
TRIAP1
ERAL1
RFX5
H2AX
MRPS35
FAM204A
GOT1
UBC
STX18
PINX1
ITFG2
OGT
AJUBA
PKM
TRIP4
HBS1L
FUS
OPA1
NEURL2
CTSA
EIF2D
SPTLC1
TMEM41A
ATP5MF-PTCD1
ATP5MF
TMEM242
RPLP0
PAFAH2
AP1G1
CCDC59
METTL1
EEF1AKMT3
RPS26
MYLIP
ARL6IP1
CALCOCO1
MANF
NOTCH2NLB
MTMR4
BLOC1S1
WASHC5
NSMCE2
NCBP2AS2
NCBP2
WDR53
FBXO45
ZFAND4
TFCP2
SHBG
FXR2
MEF2A
JPT1
TMEM222
SP2
MTMR2
UBB
GTF2H3
EIF2B1
VPS33A
HAGH
FAHD1
HSPA5
TOMM40
IDH3B
L3MBTL2
AMD1
DNAJB12
GPATCH3
TRIP12
FBXO36
TIMM22
FDPS
GIPC1
UBN1
GLYR1
COPS8
AP3M2
RERE
MVD
MAGOHB
HMGCL
SNRNP70
ACTL6A
RPS3
WDR25
WARS1
NDUFS7
ZNF212
ATF4
VAMP1
PNRC1
HMGCR
NMNAT1
LZIC
SSNA1
ANAPC2
ATP5F1B
SMN2
SMN1
ID2
H3-3B
BRIP1
RMND5A
RNF103-CHMP3
CDKL3
UBE2B
SRSF7
HMGB1
USPL1
UBQLN1
C12orf43
KAT5
ZNF56
P4HB
ALKBH3
ARF4
FAF1
IARS1
NDUFB5
MRPL47
CALR3
C19orf44
UBALD2
IER5
GSTO2
TEPSIN
NDUFAF8
ABCB8
MED23
GTF3C5
RPUSD4
FAM118B
AMOTL2
MRPL21
IGHMBP2
C2orf49
MAGOH
TIMM21
FBXO15
G3BP1
MPV17L2
PEX3
ADAT2
GPAM
DUS2
DDX28
NABP1
SPRYD3
GHITM
COMMD9
KANSL2
PSTK
CDK4
MCM7
AP4M1
ZNF143
TCF12
HPS5
GTF2H1
C5orf51
MRPL48
RPL22L1
RPL13A
GART
PEPD
APTX
DNAJA1
EIF4A1
DGLUCY
RPS6KA5
ZNF8
RPS28
NDUFA7
PLK2
GSTA4
PFKM
SENP1
FAM149B1
ECD
ADK
EIF4A2
VPS37A
CNOT7
SRSF1
RBX1
SUPV3L1
ATXN2L
DCAF8
PACSIN2
MRPL58
BAGE4
BAGE3
BAGE
SLC25A36
COA6
ZNF571
ZNF540
FEM1A
C19orf48
CTDP1
KCTD5
PCCB
GRHL2
RAP2A
DYNLL1
BORCS7
COQ9
CIAPIN1
RPP30
MRPL45
SLC25A42
MRPL27
EME1
HNRNPUL1
PAN2
EIF5
ZNF383
FDFT1
ACSL3
SFSWAP
FANCD2
TSFM
MFN2
PPP1R8
CHCHD1
VPS11
RPL5
ITGB3BP
EFCAB7
ING3
ARL15
CNOT3
TMEM217
TBC1D22B
MRPL39
TET3
DNTTIP2
HOMEZ
MED4
APLP2
TOB2
CHCHD6
XRRA1
SPCS2
SLC25A19
SEC13
PSME3
SLC25A53
POMZP3
SPRYD4
SLC7A6OS
PRMT7
UBE3B
ZSWIM7
TTC19
ZNF574
RPL28
TULP3
TSN
SEL1L
SNRPC
C9orf85
ABHD17B
USP42
HERPUD1
CALR
CDK11B
SRPRA
ABT1
COPZ1
DIABLO
FAM126A
POLG
PTP4A1
TRMT61B
HIF1AN
TAOK2
RLF
MTHFD2
ELAVL2
HMBS
TEDC1
ASF1B
ENSA
LMAN2
PPIA
AFF1
ZCCHC4
RPL12
LRSAM1
NUFIP2
DPP8
SRSF11
LRRC40
KHSRP
DNAJC9
SLC34A2
MRPS11
MRPL46
TFRC
MIS18A
OAZ1
NOLC1
MRPS16
ACAD9
SF3B5
TAF6
CNPY4
BRIX1
F11R
RPL3
TBL3
PHF5A
ACO2
ZNF839
HOXD9
GID4
ATPAF2
AAAS
DMAC2
YWHAQ
TBRG4
RASEF
ATP5IF1
OAT
RPS16
ATP6V1G1
USP30
DCAKD
NMT1
CCT2
ADPGK
RAB4B
ZNF721
PIGG
METTL9
CSRNP2
GTF2B
DDX46
HGS
ARL16
ATG7
BRF2
VCPKMT
MICU2
RPS12
TRUB1
UNK
CDC25C
FAM53C
ZFPL1
CDCA5
POLR3F
DZANK1
SLC30A6
TNKS
DDX50
FREM2
ADNP
EEF2
PSPH
CCT6A
MCCC1
HNRNPL
IDI1
KAT7
CDH1
FAM133B
UMPS
PISD
DDX19A
COQ8A
ICE2
DNAJC19
EVI5L
CASC3
TBC1D22A
YPEL2
LAS1L
DCP1A
WDR11
RBM14-RBM4
RBM14
CYLD
CFAP43
CWC25
TUFT1
GOSR1
MRPL4
ATRIP
FRA10AC1
EIF1
ECSIT
SLC25A3
ZSWIM6
RRBP1
KDM5C
STX16
LRCH4
FBXO24
CCDC12
POLR3D
IFRD2
C2orf42
RANBP6
ATP8B1
HMGCS1
RHOB
COMMD1
CCT4
PARPBP
NUP37
ZNF687
CCNC
RWDD1
VCL
PA2G4
EEF1AKNMT
CFAP410
ZNF335
SAP18
CBWD2
SDHB
GTF2IRD2B
SNAPC5
CCDC86
RETSAT
CCDC130
NUP160
PGBD4
EMC7
CCDC97
SRSF6
TIMM17A
AZIN1
BSDC1
DSTYK
TOP3A
SMCR8
PARL
NDUFS3
KBTBD4
PTCD3
POLR1A
KDM2A
SMG5
RTTN
GTF3C3
MSTO1
CKAP2
TMEM53
ARMH1
OAZ3
MRPL9
C8orf33
IMPDH2
SLC26A2
PSMD3
SRSF2
MFSD11
CBWD5
CBWD3
CBWD6
NRDE2
ZFYVE21
XRCC3
UHMK1
DCP1B
TMEM126A
PKN2
SPTY2D1
HOXD8
SPRING1
RNFT2
BRMS1
WDR89
IL4I1
NUP62
ATF5
TACSTD2
COPS7B
COQ10A
RPL18A
SSR3
SETD3
CCNK
MRPL37
CYB5RL
PLEKHM3
TENT5C
TJAP1
TMEM256
NARF
TBCB
POLR2I
TBC1D23
SLC2A1
NECAP1
PNP
ZNF444
RARS2
ORC3
SACM1L
AP5Z1
RANBP2
TMEM208
LRRC29
TFIP11
STK19
DXO
POLR1F
ATP9B
COMMD4
GTPBP10
SNRPD3
GUCD1
FAR1
NOC4L
DDX51
ZBTB4
POLR2A
WDR4
AGFG2
AP2A1
ZBTB45
PANK2
SF3A3
PRTG
KLLN
PTEN
SUMF1
DDX41
LMTK2
U2SURP
CHMP1B
AK2
CRLS1
VWA3B
KAT8
BRAP
ACAD10
CCNH
C12orf65
KCTD2
ATP5PD
MAPKAPK5
KLF5
TOX4
RAB2B
SLC24A1
INTS14
CRBN
DDX5
PDCD6IP
CIC
NOL11
TMEM128
GTF2I
TDG
PEX26
ARHGAP19
DNAJA3
ISOC2
RPS2
TMEM230
FAM76B
CEP57
UBAP2
VAC14
NAT10
ANKFY1
PSMF1
TMEM254
RPTOR
SFPQ
UBE2C
NUP54
ANKHD1-EIF4EBP3
ANKHD1
USP8
TEFM
THUMPD1
PCNA
BCL2L13
CEP350
CCDC134
PHF1
ZSCAN22
TIMM50
PGAP2
ZC3H10
STARD4
SELENOH
TRA2B
XPO1
HDAC6
STIL
ATP5MC2
PPP4R3B
KDM4D
CWC15
MTRR
FASTKD3
RPL22
ACOX3
TRMT44
TSR1
SGSM2
NDUFV1
IVD
ZSWIM4
RBSN
RPSA
MRPL10
LRRC46
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
MDM4
KCTD7
LGMN
SECISBP2
CAND1
RFX1
SRP9
HAUS5
SPTLC2
METTL2B
MMUT
CENPQ
WDHD1
SOCS4
OXNAD1
DPH3
WDR6
ATG9A
ANKZF1
CBX5
HNRNPA1
RPS3A
RPS20
RUBCN
PDK2
CSKMT
C11orf98
HUS1
NRDC
GOLGA3
ETF1
C16orf91
PHAX
ERCC5
THRAP3
LEMD3
ATF7-NPFF
ATF7
IQCG
LMLN
TCTN3
NUF2
RPL11
MIS12
DERL2
SCFD1
COX10
THOC1
SRCAP
LOC730183
RBM19
MRPS15
FOS
SARAF
DAZAP2
CKAP2L
PHKG2
POC5
SKP1
SEC31A
PRKAG1
SGO1
CLN8
GINS1
HOMER1
C6orf226
ASH2L
RAB11A
EXOSC3
ATR
NUP133
ABL1
NOP58
FAM83D
TFPT
PRPF31
MRPS23
ARFGAP2
SLC44A2
CAAP1
SETDB2
CAB39L
LONP1
CATSPERD
SNX11
NDUFB6
DNM2
MARCHF8
SWSAP1
TMBIM6
RFXANK
BORCS8
DMRT2
TMPO
TTC13
BOD1L1
NCL
DNAJB1
TECR
CITED2
BMS1
MCCC2
ZWINT
PPFIBP1
ATP6V0D1
PSMD4
NUP42
TMEM170A
TAF15
NBN
HDAC4
SDHD
DDX1
SKIV2L
NELFE
ATAD3B
NUDT15
TK1
SLC38A2
LNPK
DNM1L
TSR2
MRPS22
ZFYVE26
ATG101
PPT1
SPSB3
SMIM13
SH3GL2
NBPF1
FEM1C
GSPT1
PALB2
DCTN5
ABCC5
HSPA1B
HSD17B7
EIF4A3
SEC24C
API5
PSMA5
TXN2
RBM25
SLC1A5
SLX1B
SLX1A
BOLA2B
BOLA2
BOLA2-SMG1P6
EIF3F
RNASEH1
SMARCAL1
SEC62
MAGI3
RAB5B
TMEM183A
NME1-NME2
NME1
PAF1
H3C2
SRSF3
PPP4R3A
TSNAXIP1
RANBP10
LTV1
DDX39A
GARS1
MRPS7
GGA3
ZNF337
BDP1
SART1
TARBP2
NRL
DCAF11
AP3S2
RTN4IP1
QRSL1
HNRNPA0
TIMM44
ABRAXAS2
EIF2S2
PTPN4
SNX5
MGME1
MYH7B
GSS
KNTC1
NCDN
KIAA0319L
C5orf15
CCNB2
DNAJC3
EEF1E1
SMIM27
TOPORS
FAM156A
FAM156B
SLC25A26
PCNX4
AARSD1
C12orf73
POLR2J
RFWD3
CHEK1
ATAD3A
WSB1
MRTFA
NOCT
MYO1E
ZNF2
GPR108
YIF1A
PSMD7
POLR3B
DHX40
DERL3
RBM22
BCORL1
H1-4
HEXIM1
CUL4A
PCID2
POLE3
C9orf43
S100A13
CHTOP
AARS2
CREBL2
TIGAR
CZIB
PARK7
TUBGCP6
LOC101927572
ALKBH6
C19orf53
ANAPC1
TAX1BP3
EMC6
MRPL3
RPLP2
USP16
MRPL55
NFX1
CNPY3
RBM28
CDK11A
CALU
YEATS4
NDUFC2-KCTD14
NDUFC2
KLHDC4
ADAT1
LIN9
NOL10
ZNF133
LDAH
DIP2B
NSDHL
CETN2
B2M