ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX244177 | MM.1S
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◣ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

HIKESHI
IFRD2
BOD1
PHB
TMEM115
TMTC3
CEP290
TCEA2
CLPB
FASTKD1
PAFAH2
CALR3
C19orf44
CALCOCO1
SMPD3
PPRC1
ORMDL3
CCP110
PNKD
AAMP
PPP1R12B
CLEC16A
ZNF225
INVS
ERP44
DDX23
PANK4
COX7C
ST3GAL2
TTC13
SCNM1
LYSMD1
ZNF189
MRPL50
STAU1
CHMP4B
MED15
LARS1
SCRIB
MMACHC
CCDC163
UBAC1
ZNF749
ZFYVE28
CFAP99
UCKL1
RPIA
CTF1
BTRC
GSPT1
SYMPK
FOXA3
CRTC2
KBTBD6
CTU1
TSNAXIP1
RANBP10
SLC35B4
TTC33
AHCYL2
NTAN1
NUDCD1
PPP1R12C
C19orf53
RPL8
NOP14
GRK4
STK25
GFUS
WDR87
SIPA1L3
C1orf159
AP2S1
TNFAIP1
IFT20
ZNF169
ATP5F1D
ABCF2
PEMT
TMEM127
CIAO1
ING4
C16orf91
BOLA1
TMEM208
LRRC29
MAD2L1BP
GTPBP2
SNX17
EIF2B4
ZSCAN22
ATP5PO
TRAPPC3
ZFYVE1
TFEB
MICOS13
HSD11B1L
ZNF235
PHF12
BUB1B
NPRL2
CYB561D2
TMEM59
ZNF56
ZNF420
SMUG1
UNK
KBTBD7
TSC2
NTHL1
WNK1
RALBP1
UBQLN4
LAMTOR2
DYNC1I2
SMARCAL1
TSSC4
GATB
BANP
MRPL24
SLC4A2
CDK5
TIMM21
FBXO15
SNX27
CNIH4
NFXL1
FBXO46
AP2M1
TRAK2
STRADB
ZNF337
THRAP3
OSCAR
NDUFA3
ZFYVE19
DNAJC17
NDUFS2
SCAF1
ZNF444
PHF13
LETM1
DESI2
VCPIP1
C8orf44-SGK3
CCDC146
ZNF224
TBL3
SIRT2
NFKBIB
ZNF384
RIC8B
SLMAP
UFSP2
WRNIP1
ING3
PEX26
HTRA2
ZC3H11A
LMNB2
UBR2
FEM1A
POLR2E
CCDC150
ZNF350
NUDT13
GPANK1
CSNK2B
RAB1A
BUB3
CNOT1
CLP1
ZNF2
ELOC
B3GALNT2
PSMD11
STK17A
SERPINI1
PDCD10
DSTYK
SOX6
C11orf58
IPPK
ZNF554
TMEM101
ZNF230
PRCC
SEPTIN9
TFPT
PRPF31
CCDC90B
CTDP1
RPGRIP1L
FTO
JOSD2
ZNF37A
TMEM102
CAPN15
GPKOW
TBX6
ZNF862
DCAKD
NMT1
RPS7
VIPAS39
AHSA1
NDUFB5
MRPL47
ARHGAP9
MARS1
CCDC174
HMBOX1
INTS9
USP48
PANK3
FBXW11
WDPCP
MDH1
GTF2H4
FBXO48
APLF
SLC25A19
WAPL
FAM185A
INTS1
CDK5RAP2
VPS50
HEPACAM2
RABAC1
TTC1
MXI1
NFKBIL1
ATP6V1G2
THYN1
ACAD8
DFFA
TRAF7
CNOT4
ZW10
RAB5C
RANGAP1
SSR2
PRRG2
NOSIP
RPS6KB2
CLDND1
MED27
AKIRIN2
ZNF547
TRAPPC2B
SSR3
ZBTB7A
CWC22
PIGU
RPS27
TMEM69
GPBP1L1
TMEM43
CHCHD4
ZGPAT
ARFRP1
VAPA
SEC61A1
AURKAIP1
IGSF8
SCAMP4
ADAT3
CHCHD3
RPS20
TIMM13
KMT2B
UTP11
ZNF419
PGBD4
EMC7
ACTR1A
SUFU
ZNF226
PA2G4
RPL18A
RALGAPA2
ZNF484
ZNF32
EXOSC4
ZNF25
TOR1AIP1
PCM1
THOC6
HCFC1R1
TMEM160
BICD2
KAT7
TMEM245
PSMD2
WBP2
RBM6
DDX49
COPE
METTL3
LEMD2
PHF23
PHB2
AHCTF1
NUP153
MRPL20
PSMC4
EIF1B
RAB30
SPHK2
RPL18
PNPLA6
PRR14
SSBP1
ZNF527
SDCCAG8
CEP170
SYPL1
CXXC1
DPM3
COPS7B
PDE6D
PSMD4
VPS4B
MAX
ENOX2
UBL7
FDPS
GID4
ATPAF2
ZNF354A
CIAO3
TMEM186
PMM2
USP35
KCTD21
SLX1B
SLX1A
BOLA2B
BOLA2
BIRC5
SCAMP3
NCDN
KIAA0319L
UBE2Q1
EIF5B
TXNDC9
FBXL19
SYNGR4
COMMD9
DDX47
USP31
RPS3
BOLA2-SMG1P6
UCHL5
RO60
ZCCHC8
HIRIP3
DGAT1
GPR108
SNRPE
CFAP410
FAM193A
NCLN
ZNF140
NOLC1
SEC11C
EIF3C
EIF3CL
METTL26
CARS1
ZNF133
PSMB4
TOR2A
CFL1
RAB29
ZNF586
PTBP1
SLC38A9
NKIRAS1
RPL15
ZNF764
WDR53
FBXO45
DCAF1
ADSS2
CIAO2A
PSMD3
BOD1L1
ZNF584
RPL23A
RPS13
GINS3
MAF1
CRK
ZNF599
L3MBTL2
ZCCHC4
RAD51AP2
LIN37
RPL34
NUF2
LTA4H
BET1
RPP40
OPA1
SMN2
SMN1
ZNF26
RPS3A
ABCC5
ZNF567
EIF2S2
CAPN10
DNM1L
TERF2
LUC7L
ZNF500
TMEM199
POLDIP2
XPOT
MGRN1
C1orf109
ZNF343
NCBP2AS2
NCBP2
WASHC3
RETSAT
MITF
ZNF628
CCNT2
ABRAXAS2
EXOC4
HSP90B1
STRN
TRMT1L
SWT1
INO80B
ZNF451
GEMIN6
TRABD
SH2D6
COG2
TPGS1
RAB7A
RPS26
APH1A
ZNF747
B4GALT7
RAB3C
ZNF805
PPP6C
OAZ3
MRPL9
SNAPIN
ZNF776
BRD3
PSMB6
CLPP
FAM222A
HSPA13
ZNF277
DOCK4
ASXL1
DPP9
ZNF17
SERP1
EIF2A
TSACC
CCT3
SKIV2L
NELFE
FBXL18
SHLD1
KBTBD8
CSRNP2
TRUB1
UBA1
ZMAT5
UQCR10
RACGAP1
BLOC1S5
THAP1
DCP1A
CAND1
MED11
ZNF585A
COPS7A
DPH2
PPP1R7
PASK
KHDC4
IPO8
NUTF2
CENPT
SF3B2
GFM1
RAB8B
CWC25
GPT2
C7orf25
BDP1
UBE2N
BABAM1
POLRMT
PPP1R13L
POLR1G
RAD52
ZNF773
KATNB1
CCAR2
ZNF684
TMEM33
CHCHD6
MVB12A
WASF1
CDC40
PEX12
CDK8
ZNF180
PES1
ZNF416
BRIX1
ZNF227
MED23
RNASEH2C
QTRT2
CCDC191
NOP53
CNOT6
GPR137
INTS4
HEXIM2
ZNF436
MORF4L1
UCK1
ELP6
SCYL3
ZNF134
WIZ
NME1-NME2
NME1
PARK7
TMED9
NAA38
CYB5D1
CMPK1
SKP2
LMBRD2
TOR1A
NUP205
MACC1
CCNL1
RTEL1
ACLY
CANT1
UBA52
FAM228B
SF3B6
GAPVD1
LSG1
POLR2J3
SUGP1
MAU2
IFRD1
CLINT1
SLC33A1
DARS2
CENPL
ILF3
MYBL1
PRKCSH
CCDC151
RPL37
KCTD5
ZNF548
DDX25
PUS3
CNPY2
ITPR1
MRPS16
TM9SF4
OSBPL11
CDK9
MEA1
KLHDC3
WDR46
PFDN6
MAP3K13
DEDD
AQR
DMAC1
COPS8
ZNF513
TMEM94
TTLL11
ZDHHC16
EXOSC1
SASS6
EMSY
TOMM22
TPR
ODR4
TUT1
RBL1
NDUFS7
NARS1
POMZP3
DYNC2LI1
SF3A3
CAMLG
TMEM222
ESCO2
AKAP8
C12orf43
ZNF45
MRPS15
VEZT
FGD6
CD2BP2
TIMM23
ZSWIM9
LIG1
CUEDC2
EIF2D
FAM149B1
ECD
USP15
MTR
ZBTB45
TMEM230
GGPS1
ARID4B
SZRD1
FIS1
BIVM
POGLUT2
FBXO9
NDUFS3
KBTBD4
TRMT2A
RANBP1
RNASEH2A
SART1
NUMA1
LRTOMT
RBL2
DPM2
ALG10
AKT1S1
TBC1D17
ZNF417
NDUFV1
DUS3L
TSNAX
C8orf33
WDTC1
MRPL54
APBA3
TOGARAM1
KLHL28
SNIP1
VRK1
RWDD1
ZSCAN32
ZNF174
ZNF460
ARMH3
GALM
IPO7
ALG10B
ZNF324B
WDR18
ZNF772
SMIM30
ZNF721
PIGG
CDC34
CTNNBL1
DNAJC28
TMEM214
ZC3H10
IPO13
MED24
RPL29
ZNF530
THAP4
ATG4B
SLC37A3
SLC25A44
JTB
COA3
CNTD1
DHX33
R3HCC1L
ZNF668
ZNF646
C15orf40
UBE2J2
CDC25C
FAM53C
FBXO38
ATP13A1
CCDC124
DTX2
UBE4A
TMEM109
DNAJC11
ZNF317
PGAM1
ZNF155
SAP30
CEP350
ARHGEF1
CCDC117
GSK3A
UBE2V1
UBE2D1
DHX30
EIF3D
TSN
LRPAP1
HBP1
FCSK
TXNL4B
DHX38
XAB2
PHLPP1
SMIM13
RPS19
ZNF268
CLPTM1L
RPL12
LRSAM1
SEL1L
CCDC77
MAMSTR
SERBP1
PSMA2
MRPL32
API5
FBXO31
MAP1LC3B
PUM3
PURB
ZNF446
ZNF550
CBR4
TMEM147
TMEM129
TACC3
DNAJB6
ZNF211
ZNF221
VAMP7
ACP6
SHPK
CTNS
TOR1AIP2
NICN1
FOXJ3
MRPL19
NELFB
SETDB1
RPL22
XRRA1
SPCS2
PCBP2
ZNF286A
LRRC47
N4BP2L2
AMD1
CDK19
NFATC3
AP2B1
VPS45
SDF4
B3GALT6
DOHH
ELOB
NIP7
COG8
SESN1
SNAP47
JMJD4
CEP57L1
MRPL12
ZMAT2
NDUFB10
EIF3F
LAMTOR3
CDCA8
NR6A1
DMAP1
C8orf76
GALK2
AP5S1
COPS2
PNISR
VKORC1
SUCLG1
ZNF304
WRAP73
ZNF605
SUPT5H
YIPF2
TIMM29
ATE1
MRPL21
IGHMBP2
YY1AP1
DAP3
NOP16
HIGD2A
LTN1
NR1H2
ACBD5
PRKCI
DAZAP1
SH2B1
TUFM
HSCB
CHEK2
REXO1
RDH14
TRAPPC10
ZNF565
ZNF146
POLR2H
ATP5MF-PTCD1
ATP5MF
MRPS22
YJU2
ZNF614
NUP214
TMEM41A
ZNF165
RNMT
FAM210A
RCAN1
ABLIM2
CEP128
SENP5
PRPSAP1
SND1
SECISBP2
NMNAT1
LZIC
SNRPB2
LRWD1
ALKBH4
ZNFX1
TRUB2
COQ4
LRPPRC
MYL6B
ZSCAN5A
ZNF79
SSNA1
ANAPC2
NUP107
ANGEL2
PRPF4
CDC26
EXD2
PRPF6
LONP1
CATSPERD
PPIP5K2
GIN1
STX10
IER2
DHX8
GMPPA
CEP97
GPS2
PPP1R11
PAK2
OTUD4
FAM156A
FAM156B
KPTN
TSNARE1
MRPL44
OVCA2
SLC35E2A
DNAJA3
ZNF589
TMEM150A
REXO2
C16orf86
MEN1
NAPB
CIZ1
DNM1
SPECC1
WRAP53
TP53
RAB1B
ZRANB3
R3HDM1
SNAPC3
SPDYE14
SPDYE10P
TRPC4AP
WASHC4
SSU72
ITSN1
CRYZL1
ARPP19
KLHL24
RNF20
KNSTRN
ZNF774
TTC14
DAXX
FARSA
NEDD8-MDP1
NEDD8
GMPR2
ZNF571
ZNF540
TIMM22
ZNF691
CDC6
TVP23B
TOE1
MUTYH
PSMD10
ATG4A
DOT1L
NCOA3
SFXN5
MPI
RPS21
CSNK2A1
MYORG
YWHAG
PIK3CA
MTMR9
SLC35E1
POLR3F
DZANK1
PARL
POLR1B
UBXN6
PPIL2
C6orf89
CHCHD5
MBD1
ADO
JRK
ATG4C
ZNF302
SETMAR
TPRKB
RPL27
GALE
MARCHF5
CPEB3
RBM5
DENND1A
C18orf25
LCORL
SMG5
BCORL1
DNAJC14
USP30
SLC30A6
HDGF
PSMC5
FTSJ3
RPP30
RBM22
KIAA0930
KIF15
KIAA1143
RBBP5
RPS28
NDUFA7
RPLP2
SUCO
DDA1
WASL
TRIP4
FAM168A
TAF8
RAB22A
TIMMDC1
TCOF1
CCPG1
C15orf65
ZNF181
PTRHD1
CENPO
FAM32A
IQCH
AAGAB
LRGUK
MAGOH
RC3H2