ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5501657 | A-375
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◣ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

GSTA4
H4C15
H4C14
WDR74
GBA
NUF2
FRA10AC1
DSTYK
MTRNR2L8
SF3A3
MRPL21
IGHMBP2
INTS5
POLDIP3
STX16
RBBP5
C12orf57
H2BC21
H2AC20
H2AC21
SAR1B
S100A2
UCKL1
EIF2D
SNAP47
JMJD4
FAM227B
DTWD1
SSBP1
HMGB1
USPL1
INTS12
GSTCD
NR1H3
ACP2
SELENOH
H4C8
S100A16
TRIP4
ZBTB45
DRG2
NDUFC2-KCTD14
NDUFC2
TATDN3
NSL1
SMG8
CCNL1
RPS7
H2BC18
H3C13
RPL37
NPAS4
SIRT4
TBC1D19
ZNFX1
NDUFS3
KBTBD4
PSMF1
CCDC107
RAD54L2
H4C11
EIF1AD
BANF1
DCP1A
NMNAT1
LZIC
H2AC19
H2AC18
MTRNR2L2
CCDC88A
METTL9
YARS1
S100PBP
STAT3
DPY19L4
H1-3
SLC44A1
NOC4L
DDX51
GARS1
POLR3E
MRPS23
H1-4
C17orf75
LAMP1
SEC13
NME1-NME2
NME1
MRPS18C
HELQ
ERCC6L2
SCNM1
LYSMD1
RUVBL1
LRRC37A3
DMAP1
CUL4A
PCID2
UQCC1
ADPRHL1
ETV4
RPS6
STOML2
H1-2
PRRG2
NOSIP
SRSF4
MGAT5B
JRK
DDIT4
GTF2H2C_2
GTF2H2C
TUBGCP3
H4C12
MRPL40
HIRA
MTF2
H3C3
LRRC59
AAR2
KLHL20
PPIP5K2
GIN1
NUP54
TAF1D
C11orf54
AURKAIP1
TVP23B
CALHM2
MAT2A
CDKN2AIPNL
KMT2C
MPHOSPH10
MCEE
RGPD2
RGPD1
H3C15
H3C14
ARL8B
TSC2
NTHL1
PSMD9
HPD
STX18
CLUH
NFE2L2
KNL1
VPS28
POLG
TTC4
RPLP1
H2BC11
H2AC11
STAG1
WDR24
C12orf65
MRPL1
PSMD6
TTLL11
JUNB
SMARCD2
TSFM
DNAJC25-GNG10
DNAJC25
SCAND1
GEMIN7
ATP5MC2
BNIP1
RPL41
SYT7
SRSF7
RANBP2
DUS1L
REXO4
DDX1
GTF2H2
SNRPE
MLEC
ST3GAL2
GINS3
LAMTOR5
RPS20
NUP153
COMMD2
NSUN4
C8orf37
ADPRS
FAM98B
MRPL34
PAFAH2
CCAR2
AQR
SDHAF3
TBL3
MCOLN1
G6PC3
COMMD1
CCT4
BANP
NR1H2
SLC33A1
DDX19A
MRPS14
DCAF10
PYROXD2
MRPS35
RPS19
ALG10B
TMED2
KDM1A
INO80B
PHF12
ESCO1
GTF3C3
NSA2
GFM2
DHRS3
TEFM
RPL27
MAPK1IP1L
BAX
FAM133B
MAZ
SPRYD4
ZNF749
TRMT61B
RPS3A
PMPCA
ENTR1
TRPM7
TIMM22
SNRNP70
C12orf73
CLCN7
MRPS31
LDAH
SNRPB
CBX5
HNRNPA1
KCNMA1
SFPQ
WDR36
TMEM222
UCHL5
RO60
BRF2
RAB5IF
AP3S2
MED4
NFX1
H4C3
DNAJC2
CIAO3
MRPL55
RCAN1
USP30
RPL12
LRSAM1
MTIF2
ZNF398
ZNF425
MORF4L1
EFCAB2
ADAR
PHLDA1
NCOA7
COQ8B
VIRMA
ILF3
UTP3
ERCC1
ACYP2
H4C9
OMA1
DAB1
RPL29
TOR1A
MED18
FZD1
PPP1R14B
MRPL58
PPRC1
TOB2
MRPL20
PURB
ID1
VPS36
ILF2
AARS2
GPRC5A
HEXIM2
FAM207A
BMS1
H3C2
CZIB
H4C1
H3C1
RIN1
NOTCH2NLC
C8orf33
ADNP
CDK5RAP1
COX16
ATXN2L
POLR2J
NOL11
MRPS2
C9orf116
FAM228B
TACO1
SF3B6
TMEM101
INO80C
ZER1
GTF2B
TTI2
OTUD7B
RPL26L1
PPP4R2
ZC3H6
YIPF2
TIMM29
PRPF4
CDC26
VPS72
MBTPS2
CCDC59
UBA52
EFTUD2
CCDC103
ZNF3
ZC3HC1
MAP2K3
CCDC15
H4C6
KCTD5
DPP8
UBL7
PNPT1
RRP15
EIF3G
TMEM39B
RPS15A
TBC1D13
CCNT1
ATAD2B
HIPK1
CTNNB1
DCAF8
PHB2
RPTOR
MAF1
PANK4
IDH3B
SLX1B
SLX1A
BOLA2B
BOLA2
NFKB2
LIG4
ABHD13
GPN1
CCDC121
SNRPD1
MRPL27
EME1
CSKMT
C11orf98
LMNA
FAF2
UBA2
PRMT5
MBNL2
DUS2
DDX28
PRDX1
WDTC1
TOR2A
EMC4
RASA1
MYL5
ATP5ME
CRB1
SEC22B
RPGR
NFYC
PARP2
ARL6IP1
TMA16
CPSF1
ALDOA
RPL28
MLLT11
CDC42SE1
YWHAE
TMEM250
TBL1X
ATP5MF-PTCD1
ATP5MF
COMMD9
TRAF7
ZMPSTE24
MAN2C1
WDR70
H2BC4
H2AC6
SMG7
TBPL1
HSPA6
H2BC14
H2AC14
OAZ3
MRPL9
C19orf53
TAS1R1
NOL9
EIF2B3
ADAM22
SOS1
FCHSD2
CLUAP1
RPS27
ITGB3BP
EFCAB7
TPD52L2
RRP9
PARP3
OPA1
BTRC
HEXA
DPP9
SNRPB2
LRWD1
ALKBH4
H3-2
H3C12
MRPL3
MTR
CIAO2B
CES2
BIRC2
RPS24
SHMT1
RNASEH2C
RAD52
SRCAP
LOC730183
RPL5
CD2BP2
SF3B4
SAAL1
TRIB1
TCF12
RFXANK
BORCS8
TMEM230
MIA3
TSNAX
YTHDF2
MYH7B
GSS
ACBD3
BCAT2
INPP4B
SH3TC2
FRMD4A
OSCAR
NDUFA3
RPS16
EPRS1
ZBTB40
HSD17B12
H4C5
CALR3
C19orf44
TAF5
PARK7
PCIF1
IQCH
AAGAB
RBM45
ZNF106
ATF6
IQSEC3
FXYD3
POLR2J3
SART1
R3HDM2
RPL26
C5orf15
NACA
NAA20
SLC20A1
DCLRE1B
AP4B1
MBLAC1
HEATR1
TGFA
CPT2
RPS3
SMG5
BOD1L1
CNPY2
USE1
TMEM259
FAM3C
ZNF286A
OCIAD1
PDS5A
CDC25C
FAM53C
GALK2
COPS2
PUM3
POLR3B
NDUFAF5
ESF1
SYCE2
PPP6R1
IFRD2
SNX17
EIF2B4
RPL22
NUP107
MTOR
PRKAR1B
CDK12
FAM200B
ETV3
NBPF15
H2AX
RBSN
GOLGA1
BUD13
PBRM1
GNL3
THEM4
QTRT1
CEP135
SRA1
H2BC15
H2AC15
YTHDF1
PYGB
GPR180
SEMA3B
NDUFS7
MRPL24
NBPF1
STYXL1
CAAP1
ASB6
ZCWPW2
AZI2
LCMT2
ADAL
BLOC1S6
SRFBP1
POLM
PARD6A
ACD
RBM28
NUCKS1
INPP5F
WWTR1
PCM1
INTS4
NDUFA12
ZSCAN30
TSSK6
NDUFA13
ZNF696
H4C4
DOHH
SNX19
ARHGAP19
NUP133
CUTC
COX15
NCOA5
ACBD5
PSMA1
UBE2D3
AP1G1
DIAPH1
LARS2
SACM1L
DHX8
SNF8
E4F1
SECISBP2L
RABGAP1L
CISD2
FCRLA
SMN2
SMN1
CCDC124
WDR11
HAUS5
FARSA
ENO1
ULK4
UTP25
H2BC13
H2AC13
TRIAP1
SLC3A2
SPHK2
RPL18
MAGOH
USF1
AVPI1
TPK1
KRR1
H3C8
ARHGEF12
GTF3C5
CWC25
TTC17
CDC73
IMPDH2
TAF12
TBC1D23
MITD1
TAMM41
RNF166
CTU2
YAE1
PKMYT1
PEMT
ZNF721
PIGG
PHAX
RPL6
POLR2C
FBXO31
PTPN11
COMMD4
C1orf74
MAPK8IP3
IREB2
AMACR
ETS1
ALDH1A3
ZCCHC4
SLC30A6
GTF2H3
EIF2B1
TBRG4
COPS7A
SRSF2
MFSD11
POR
GGCX
BORCS7
SLC39A3
SEC11A
MSL2
ZNF668
ZNF646
SLTM
COA7
PDS5B
PSMD3
TOR1AIP1
HSPA9
VAMP1
PEX12
EXOSC6
NUP42
TTC1
STX4
INKA2
DDX20
DHRS13
SSNA1
ANAPC2
TSN
NSFL1C
ZC3H10
PTBP1
POLR2M
NOC3L
MUL1
DDX59
DIDO1
GID8
HSPA8
H4C2
TMEM208
LRRC29
ING4
STMP1
RMND1
ARMT1
B3GAT3
RSRP1
NOTCH2NLA
NOL7
H3-3B
KLHL12
C8orf76
MEPCE
RARS1
ZCWPW1
ORC5
SLC35E2B
VAMP4
ZDHHC7
MTAP
SPNS1
LRCH4
FBXO24
EDC4
M6PR
KLRG1
CHD1L
RPL23
PRDM10
RBM12
CPNE1
RPL24
DCBLD2
MZF1
ATN1
RDH5
PRCC
DNAJC11
ABRAXAS2
MRPL44
SLC25A51
RMDN2
H2AC4
SIK2
AMOTL1
OR2L13
SRPRA
FBXW2
RPS13
HEXIM1
RPL35
ARPC5L
MRPL38
TTC14
RINT1
SETDB1
METTL2A
RAD23A
LTA4H
GPX1
COX20
NWD1
RPS28
NDUFA7
FUS
SLC24A1
INTS14
SH2B1
PPP1R8
AP5S1
IPO4
SAP30
THOC5
H2BC17
H2AC17
NDUFA9
AKAP3
SEC14L1
TBRG1
TTPAL
ZNF256
MRM3
GLOD4
PINX1
UBE2Q1
MRPL48
DDX46
MANBAL
TAGLN2
NCBP3
LTBR
GPN2
C2CD5
NSMCE1
KBTBD6
TIGD6
HMGXB3
ERLIN2
FRG1
DENR
MRPL33
LONP2
ABCC11
SLC35A4
APBB3
GATAD1
TIMM50
RPSA
FBXL18
TAF1B
RPL17-C18orf32
RPL17
RPL7A
MED22
YKT6
MTCH2
ISG20
MEOX2
MRPS15
PNPLA6
STAT1
EEF1A1
HDAC4
TPT1
RANBP6
ZBTB37
H3C4
COIL
UTP14A
EPHA3
CAPS
NEURL2
CTSA
KHDC4
SNAPC5
RAD50
MFAP3
FAM114A2
ZZEF1
CYB5D2
GABPB2
PSMB7
UTP23
EDEM2
WWP2
MICOS13
HSD11B1L
EIF4A3
ZNF76
UQCRQ
GDF9
MYDGF
PPIL3
NIF3L1
LEO1
HACL1
BTD
B9D1
SMARCA4
ZBTB38
EPOP
TRAPPC3
GOSR1
SRRM2
ZNF484
GAPDH
TUBA1B
USP19
NECAP1
WDR55
AP2A1
AXDND1
SYTL2
HRCT1
ZSCAN22
C16orf91
SLMAP
MVB12A
MKRN2
RFC2
PKIG
TOMM40
ARL14EP
MAGOHB
U2SURP
SLC35A3
MRFAP1
CLNS1A
TMBIM6
ANKRD18B
ROBO3
HNRNPH2
ALX1
DNM2
SLC35B1
ALG10
RAD9A
ARID1A
BTG1
GPATCH4
PSMD8
SZRD1
VPS29
RAD9B
PRELID3B
FLRT3
AGMO
S100A3
POLR3F
DZANK1
TRAPPC4
RPS25
NSUN6
ABL2
MYOF
DGAT1
SRSF1
POMP
ECI1
NEK4
ZDHHC21
IER3
ZNF335
SURF6
C6orf89
RAB7A
CANX
THUMPD3
STEAP1B
MRPL4
HM13
MLF2
HPS1
ZNF575
POLE3
C9orf43
SHPK
CTNS
DNAJB1
PET117
KAT14
TECR
SCN11A
WDR48
BORCS5
LIN54
HERPUD2
NR4A1
TRIM46
KRTCAP2
PARL
AP2B1
TRDMT1
RNF34
RAD23B
VTA1
NMBR
KMT2D
AHCTF1
LONP1
CATSPERD
HSP90AB1
USP48
GFM1
MDM4
ERCC5
CGGBP1
SRRT
FBXW9
C3orf38
TNPO2
TRIB3
TXNDC15
TIGD1
EIF4E2
PRPF6
ZNF408
ARHGAP1
RABL2B
ZNF185
PSRC1
C1QTNF3
DNAJB12
ZNF140
STAMBPL1
RBM8A
PIGC
GPN3
FAM216A
CLIP4
RWDD1
VPS33A
PMS1
ORMDL1
CPPED1
FAM168A
CSTF1
AURKA
EXOSC3
RAB8A
NTMT1
ZNF593
C1orf232
SHISA4
UBQLN4
LAMTOR2
H2BU1
H2AW
CXCL1
NOTCH2