ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX1035589 | SK-N-SH
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◣ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

WDR74
SP2
MTRNR2L2
SPATC1L
RFX1
ZNF718
ZNF595
HIBADH
KHSRP
ZNF335
RABL2B
RABL2A
PSMD1
MAPKAPK5
NME6
RWDD1
CACTIN
POLR3F
DZANK1
IPO13
SUDS3
NUP85
DYNC1LI2
VDAC2
EFTUD2
CCDC103
PSMG2
CEP76
HSPA9
NVL
VTI1B
NUP205
POLR2E
RPL21
GOSR2
TBCK
AIMP1
MRPS7
GGA3
NCLN
EXOSC5
BCKDHA
DCTN1
ATP5MG
C19orf48
STAM2
HADHB
HADHA
REXO1
SRD5A1
NSUN2
STAM
BLCAP
FARSB
SKP1
SEC61B
TSNAX
LYRM4
FARS2
SLC35B1
TSN
UPF2
PES1
NDUFA4
IRGQ
ZNF576
RBKS
BABAM2
ACTR10
PAK1IP1
C6orf52
PNO1
CAPRIN1
RBBP5
PSMD12
DPH6
COX7A2L
TTC8
ISCU
SUPV3L1
IQCG
GOLGA5
RPS23
ATP6AP1L
TMED1
VARS1
RPL35A
ZRANB2
PI4KB
MRPS5
SART3
SMC2
ANAPC7
PDAP1
BUD31
EIF4ENIF1
ADK
MRPL11
PCBP1
USP1
SELENOF
HS2ST1
C17orf80
AP3M1
FAM104A
ICE1
UFM1
RPS12
NEUROG2
RABGGTB
SF3B3
COG4
PROSER1
NHLRC3
XPNPEP3
ST13
APOM
ZGPAT
ARFRP1
RPS27A
CLHC1
BAG6
OSGEP
APEX1
TM9SF1
COMMD1
PAF1
MED29
CCT4
NEUROG3
RPS29
HES1
PDE12
DDX39B
PTGES2
UBE2I
NDUFA10
PIN4
LRR1
SKIL
RARB
VEZT
FGD6
ARHGAP11A-SCG5
ARHGAP11A
MTRNR2L8
MRTO4
EMC1
TAF9
RAD17
AK6
SUCLG1
FLOT1
PMAIP1
HOXA4
STK36
RNF25
NDUFS7
NEUROG1
OAZ3
ATOH1
EIF2S3
RPL7
RDH10
SH2B1
SEC11C
DHRS3
BNIP3
BICRA
GADD45GIP1
BBS9
KAT6B
IGFBP2
GPR108
RARA
TTI2
NEURL2
CTSA
CNPY2
HOXA2
GTF3C4
DDX31
ZNF746
DNM2
TPRA1
CDC73
ID2
PCBD2
TEPSIN
NDUFAF8
P4HB
PDHX
APIP
NBAS
MINDY2
RPN1
C16orf91
TBX2
CLGN
GORAB
CCDC200
ZNF383
ANKLE2
ZFHX3
DOLPP1
STX18
RAB5B
GLT8D1
KANSL3
CAMTA1
DONSON
UPF3A
NPAS4
ANK2
TLE4
ATF6
SP5
PDHB
OTUD7B
KATNB1
MRPL38
RBPJ
FRA10AC1
PGK1
DPP9
PRUNE2
GATA4
MTMR4
DUSP6
HUS1
FOXP1
ZNF687
XKR7
PANK2
TBX3
CCDC174
ARRDC4
NRL
KIF21B
MRPS31
ALKBH7
ST18
CNOT2
HOXA3
NFKBIA
SMARCD2
STIP1
ALKBH5
NR2F1
OSBP
TLE2
RMND5A
DCAF11
INSM1
PDE4D
PPCDC
RARG
PCNA
IQSEC3
ZFHX4
SOD2
ATP5F1B
POLDIP3
GPCPD1
RNF207
MRPL34
SLC45A4
MDM2
KMT5A
LPCAT3
PPP6R3
ZNF608
SMIM20
SP1
MALRD1
ANKHD1-EIF4EBP3
ANKHD1
ARSG
EIF2AK3
SNX16
KAZALD1
MACROH2A1
GRSF1
CRLS1
GADD45G
TLE6
KNL1
KCNAB2
TMEM70
SHF
SACM1L
MYRIP
METTL11B
HEXIM2
HNRNPD
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
SMG6
PRMT5
POLG
DAGLB
CBFA2T2
EIF3D
RBBP7
NLK
FBXO31
ANKRD28
SLC30A4
COX5A
QPRT
ZNF503
SERPINE1
RAB37
RTN4
SREBF1
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
NKD1
RUNX1T1
ARHGEF10L
ILF2
GATD3B
GATD3A
CEP41
RHBDD1
HNMT
CDS2
PRKACA
AXDND1
TDRKH
DIABLO
EVI5L
NCOA2
MTF2
ARID4A
LUC7L2
TOP2A
PNKD
SEC14L1
G3BP1
HTR5A
MBD2
BFSP1
WTAP
KDM3A
KMT2A
ARHGAP4
TRIB1
AIFM2
TCTEX1D4
HMGB1
BTBD19
TIGD1
EIF4E2
USP42
ID1
DUSP9
NRSN2
IQGAP2
RNF149
NR2C1
GOT1
CBX3
RASSF2
NEDD9
SH3BP2
INAFM2
HSPA1B
ING1
PIKFYVE
HES3
HMGCS1
IRF9
CCDC88A
TUBGCP3
ACYP1
B4GAT1
ROGDI
FAM107B
EIF1B
CPSF4L
TNFRSF19
ZNF76
NHLRC1
CMSS1
RPS10-NUDT3
RPS10
SCAP
BHLHE40
ADM
PRDM10
EXOSC4
EPM2A
ANKS4B
STX16
LCK
TSPAN4
GFOD1
POLR3E
PARK7
NANP
HPCAL1
NEO1
PRDM12
HSP90B1
CYB5R4
PCTP
ICAM1
FAAP24
CEP89
ANP32E
MPND
LTBR
ZC2HC1C
DLC1
TUBB4B
USPL1
UBE2C
TMEM60
PHTF2
SRCAP
LOC730183
MVD
POLR2J3
SLC25A19
CS
MFSD11
CLCN3
GPATCH8
HNRNPC
TRAF4
ATP23
SRSF11
TBL1X
MPV17L2
CELSR3
ADAP1
TANK
CASC3
LBX2
ARHGAP24
CCDC107
SEPTIN9
CDC42EP3
CLK1
GLRX5
HNRNPUL1
IRS1
ARNTL
YARS1
S100PBP
SNX3
HOXB4
ZNF148
TXNDC11
LRRC59
METTL25
CCDC59
LPIN1
ZCCHC3
FMC1-LUC7L2
FMC1
SHB
NCBP2AS2
NCBP2
ABHD2
TMPPE
GLB1
LRRC40
NCOA7
HECTD4
TCERG1
DNAJB1
SLC9A1
CSRNP1
KPNB1
CYCS
C8orf37
MTRF1L
TMEM94
JUP
STARD4
FILIP1L
BAZ1B
KIAA0319L
NRSN1
LIN28A
H4C12
HOXC5
CALM2
ARIH2
SPCS1
ZNF740
CSAD
PRR14
TOMM40
FAM227B
DTWD1
SERPINB9
MSMO1
CBX5
GGT1
FAM72D
RSRC1
NBPF1
CCNL1
WBP1L
PEX14
NKIRAS1
NUF2
RAB11A
SLX1B
SLX1A
BOLA2B
ELOVL6
LRCH4
FBXO24
MBD6
VOPP1
NELFA
FBXO41
LAPTM5
PXMP4
ETV4
NAT8
ARID5A
PSMD3
NFE2
DCP1A
KAT7
MTRNR2L9
HEBP2
DSCAML1
ACTL6A
CEBPE
CCPG1
C15orf65
ZNF219
MYADM
HBP1
FASTKD1
USP3
PSMD9
HPD
DYNLT1
MRPL4
SKA2
PRR11
POLR3A
ATXN1L
TRIP4
RASSF5
LONRF3
LNPEP
RGS12
HOXC6
GFRA3
RAI14
PKN2
MAF1
TMEM9
HMGN4
EEF1AKNMT
SLC7A5
CDCA7L
MANF
HSPA5
SKIV2L
NELFE
BOLA2
RPS6KA1
SRSF2
REC8
OTUD4
PKDCC
HINT2
GSTA4
MFSD6
AP3M2
MEF2C
C3
TBRG4
YTHDF2
BRWD1
SNRPF
ARMC1
L1CAM
CIC
HNRNPL
GLRA1
LOC100289561
HOXC4
TRIM44
RAD50
LDLR
CLDN2
C16orf54
PGP
SLCO4C1
TRIM41
ADAM17
TXNRD1
CABIN1
TOP2B
CPLX2
CNPY3
PEX3
ADAT2
BHLHA15
POR
OPA1
TMEM86A
NR1D2
MFN2
STT3A
STK38
IARS1
AOPEP
RFESD
MAP11
USP15
FAM72C
TIGD2
YIF1A
H6PD
PSMF1
KEAP1
SPSB3
NUBP2
TCF4
H4C8
PTGES3
BIN2
DIAPH1
SPIN1
RBM15
BRD2
ELF1
CBWD5
ADGRG3
CYBA
IQCH
AAGAB
BAIAP2
GTF2H2
AKIRIN1
PARL
SPECC1
KDM1A
NBN
KMT5C
CYP1A1
C11orf24
KIAA0319
RNASEH1
RPS6KB2
NBEAL2
NADK
DIAPH3
KAT6A
DYNLL1
C1RL
NCDN
BOLA2-SMG1P6
IBTK
MAPKAPK3
CISH
GBE1
ADRM1
ZBTB45
FGR
TMBIM6
MED9
HNRNPA2B1
H2AZ2
DENND4B
SEMA5B
TBC1D8
PARP2
SERTAD2
SPAG7
ZNF292
TMEM222
VIRMA
PXYLP1
CNOT1
E2F3
TMCO6
GRHL3
MTHFD1L
MFSD8
ABHD18
CDKN2D
CEP70
FAM72A
SH3TC1
TLE3
STAT3
CBWD3
HESX1
NIBAN2
TMEM259
SLC11A2
ACAT2
ZNF77
SEPTIN2
PWWP2A
HDLBP
LEKR1
WNT10B
PIWIL2
WDR25
WARS1
ZFYVE21
XRCC3
CD38
PIK3AP1
AKAP1
SLC35E2A
PLIN2
PTP4A2
DZIP3
CIP2A
MAP3K3
MTHFR
AGT
TMX2
PEX2
MED19
OTX1
GRWD1
LFNG
C12orf65
SRPRA
TRIAP1
PMPCB
BCAR3
MED23
KLF17
IDH1
NFE2L1
FGFRL1
TMEM217
TBC1D22B
RNF139
THUMPD3
SLC24A1
GFER
EIF4H
PACSIN2
CPVL
PDK2
MTMR12
MTERF4
PKM
H2AX
H4C3
H4C14
MSANTD4
AK2
CMTR1
HNRNPA1
DDX3X
RNF34
MAPKBP1
TOB2
CLIC4
RPS8
NFE2L2
WBP4
TBCCD1
IFRD2
ZC3H6
MAEA
STMN3
SERPINB6
SLC33A1
AURKAIP1
EIF4A3
UBL7
KATNA1
VANGL2
TOM1L2
MIA2
DRC3
CALR
CLK2
PPP1R13B
CX3CL1
FGA
SPATA1
GTF2H2C
GTF2H2C_2
TRAF2
DRAP1
C11orf68
ZNF341
ARFGAP2
RECQL
GOLT1B
C6orf136
PCK1
ASB1
TEDC1
STK11
HAL
NOTCH2
SLC51B
TRABD
TOP1MT
SLC25A45
TLN1
CREB3
SLC39A13
UGP2
IL27
DENND2D
MCU
BZW2
LRRC45
CENPX
CTNNB1
PPIB
MGST2
ACACA
PLEKHA7
RXRA
PA2G4
TRMT6
MRPS15
MCM8
MVK
HERC5
PSMB3
RCL1
ZDHHC4
MAPRE2
BDH1
FDFT1
CHN2
TIMM44
PHF8
PLCB2
ATF3
ZBTB20
UPP1
KBTBD2
DDIT4
GDPGP1
CIB1
BNIP2
SLC35E3
IST1
RCOR3
RASGRP2
CDC25C
SAXO2
EFL1
SDE2
MRPS23
LRRC37A3
ABCA12
ZNF414
FDPS
C6orf89
DROSHA
C5orf22
COQ10A
HHAT
FAM120B
TMEM248
METTL26
RBM27
ANAPC5
RPLP0
NMNAT1
LZIC
SHFL
MAP2K1
CENPA
COQ8A
BOD1L1
DUSP4
ZBTB17
MC1R
SIPA1
PRDM1
LIX1
IL6ST
IFNGR1
SRRM3
TRDMT1
JAK3
DUS1L
DMD
NREP
NUDT15
TCF19
PIP4P2
CCHCR1
ACVR1
ATXN2
BRAP
ACAD10
ATP5PD
SHC1
FOXJ3
CKS1B
FAM110A
BUD13
HNRNPF
GABRB2
PPP2R5A
SF3A3
DNAJB2
BOLA3
ASNS
SEC31A
CLCN6
ZNF143
VAV1
TAGLN2
MEPCE
FNTA
ZNF212
EIF4A1
EIF2D
LMO7
ELOC
NDRG2
ERLIN2
ELMO1
TMEM41A
C18orf32
S100A2
DNAJB5
ARL4A
LDHA
H4C11
SNAPC5
NME1
HMGCR
ETFDH
C4orf46
ANKRD13D
AHCY
RFWD3
ARL6IP1
H4C15
NCOA4
CBWD6
BARHL1
RANBP3
C12orf29
CHD8
NDFIP2
MRPL20
INTS5
DUSP10
NOM1
CCDC130
TEFM
EPHA10
RPL37
TCHP
COMMD2
ADGRA1
MTOR
PARP3
RBSN
H3-3B
FOXN2
ATG2A
SYCE3
MYT1L
SAR1B
GARS1
CDK5RAP1
SPACA1
PICALM
C3orf86
ZCWPW1
ZBTB9
ITPK1
ABHD12
TRMT2A
RANBP1
TBL3
MRPL39
GTF3A
ARID1A
RBL2
SMPD1