ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584307 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◣ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

RABL2B
RABL2A
MAPKAPK5
POLR3F
DZANK1
PSMD1
NME6
IPO13
ZNF335
NCLN
DYNC1LI2
CACTIN
SUDS3
RWDD1
NUP85
NEUROG2
VDAC2
POLR2E
VTI1B
MRPS7
GGA3
PSMG2
CEP76
HSPA9
NUP205
TSN
EFTUD2
CCDC103
TBCK
AIMP1
GOSR2
NVL
REXO1
DCTN1
TSNAX
RPL21
STAM2
SKP1
IRGQ
ZNF576
EXOSC5
BCKDHA
PES1
SEC61B
C19orf48
CAPRIN1
STAM
BLCAP
SRD5A1
NSUN2
PNO1
RBBP5
SLC35B1
UPF2
LYRM4
FARS2
FARSB
ACTR10
ATP5MG
NEUROG3
PCBP1
NDUFA4
PAK1IP1
C6orf52
HADHB
HADHA
GOLGA5
PSMD12
ZRANB2
TMED1
COX7A2L
VARS1
TTC8
DPH6
SUPV3L1
ANAPC7
PI4KB
ISCU
SART3
UFM1
PDAP1
BUD31
MRPS5
ICE1
IQCG
RPL35A
SF3B3
COG4
SELENOF
HS2ST1
RPS23
ATP6AP1L
MRPL11
RABGGTB
ADK
AP3M1
RBKS
BABAM2
USP1
PROSER1
NHLRC3
SMC2
C17orf80
FAM104A
EIF4ENIF1
OSGEP
APEX1
XPNPEP3
ST13
RPS12
RPS27A
CLHC1
BICRA
PAF1
MED29
UBE2I
COMMD1
CCT4
TM9SF1
NDUFA10
HES1
BNIP3
VEZT
FGD6
NBAS
MRTO4
EMC1
ARHGAP11A-SCG5
ARHGAP11A
ATOH1
PIN4
APOM
BAG6
RPS29
LRR1
RBBP7
GTF3C4
DDX31
INSM1
DDX39B
C16orf91
RPN1
ARHGEF1
SUCLG1
CDC73
NEUROG1
OAZ3
EIF2S3
ANKLE2
TAF9
RAD17
AK6
PMAIP1
SKIL
SEC11C
RPL7
RDH10
PCBD2
PDHX
APIP
GADD45GIP1
LPIN1
PRUNE2
ZGPAT
ARFRP1
STK36
RNF25
PRDM12
ALKBH5
IGFBP2
PTGES2
ZNF383
SRSF11
LRRC40
CNPY2
TLE2
ANK2
PDHB
GFER
SH2B1
AXDND1
RYBP
GORAB
TMEM70
KIF26A
KIF21B
CLDN2
PDE12
EIF4H
KDM1A
NELFA
RBPJ
RGS12
CASC3
BFSP1
CLEC18C
MYRIP
GLT8D1
SPCS1
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
BBS9
HSPA1B
MALRD1
TBC1D8
RAI14
JAKMIP1
DDX3X
TPRA1
BRWD1
TLE4
CLGN
ZNF746
MEPCE
ZCWPW1
GFRA3
NRDE2
CDIP1
ID1
HOXB4
TIGD1
EIF4E2
DGKZ
HOXA4
MRPL38
ARL14EP
GTF3A
SLC7A6OS
PRMT7
CNTLN
CS
PCBP2
SPHK2
RPL18
SLC10A2
ZFHX3
PNKD
TRIM41
VOPP1
ZNF341
RNF138
RPS10-NUDT3
RPS10
GADD45G
NCBP3
CCDC43
RNF32
MFSD3
RPS26
WDR47
SFT2D2
CPVL
CHN2
ACBD6
NPAS4
SRRM3
CALHM6
ZNF292
SLC39A6
ELP2
DUSP2
MUSTN1
TCHP
E2F6
RARA
CHD8
OR8J1
CPLX1
AP1B1
CNN3
C12orf42
SPACA1
CBX3
HNRNPA2B1
VANGL2
DNAJB2
CLEC18B
CAMTA1
CDX1
EVI5
SGK3
KMT2A
PEX2
DHX32
SEMA4B
HNRNPD
ZNF891
ZNF10
RHBDD1
TRDMT1
RCOR1
ITPRIP
HOXD3
KAT6A
PLXNB1
POLR2J3
MET
FTCDNL1
TBC1D15
USP17L15
YAP1
WDR74
MTRNR2L2
MTRNR2L8
RARB
SPATC1L
FLOT1
NDUFS7
CCDC200
SP2
DHRS3
KAT6B
GPR108
NEURL2
CTSA
TTI2
HOXA2
DNM2
ID2
TEPSIN
NDUFAF8
P4HB
MINDY2
TBX2
DOLPP1
STX18
RAB5B
KANSL3
DONSON
UPF3A
ATF6
SP5
CBFA2T2
OTUD7B
KATNB1
PANK2
FRA10AC1
CCDC174
PGK1
DPP9
SMARCD2
GATA4
MTMR4
DUSP6
HUS1
FOXP1
ZNF687
XKR7
TBX3
ARRDC4
ARSG
NRL
MRPS31
QPRT
ALKBH7
ST18
CNOT2
RFX1
POLDIP3
HOXA3
NFKBIA
STIP1
NR2F1
OSBP
RMND5A
DCAF11
ZNF608
PDE4D
PPCDC
RARG
PCNA
IQSEC3
ZFHX4
SOD2
ATP5F1B
GPCPD1
RNF207
MRPL34
SLC45A4
MDM2
KMT5A
LPCAT3
RUNX1T1
PPP6R3
SMIM20
SP1
ANKHD1-EIF4EBP3
ANKHD1
EIF2AK3
HEXIM2
SNX16
KAZALD1
MACROH2A1
GRSF1
CRLS1
TLE6
KNL1
KCNAB2
POLG
MLEC
TNFRSF19
SHF
SACM1L
METTL11B
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
MTF2
PKN2
SMG6
PRMT5
KDM3A
DAGLB
EIF3D
NLK
FBXO31
ANKRD28
SLC30A4
COX5A
ZNF503
SERPINE1
RAB37
RTN4
HNMT
SREBF1
NKD1
HMGB1
ARHGEF10L
ILF2
GATD3B
GATD3A
CEP41
CDS2
PRKACA
TDRKH
DIABLO
CBX5
TMEM101
KIAA0319
EVI5L
NCOA2
ARID4A
TXNDC11
LUC7L2
TOP2A
SEC14L1
G3BP1
HTR5A
MBD2
ZNF76
WTAP
PRDM10
ARHGAP4
TRIB1
AIFM2
TCTEX1D4
BTBD19
USP42
DUSP9
NRSN2
IQGAP2
RNF149
NR2C1
GOT1
RASSF2
NEDD9
USPL1
SH3BP2
TMEM60
PHTF2
INAFM2
ING1
PIKFYVE
HES3
HMGCS1
IRF9
CCDC88A
TUBGCP3
ACYP1
B4GAT1
ROGDI
FAM107B
EIF1B
CPSF4L
NHLRC1
CMSS1
SCAP
BHLHE40
ADM
EXOSC4
EPM2A
YTHDF2
ANKS4B
STX16
LCK
TSPAN4
GFOD1
MFSD11
POLR3E
PARK7
NANP
HPCAL1
NEO1
HSP90B1
CYB5R4
PCGF1
PCTP
ICAM1
FAAP24
CEP89
ANP32E
MPND
LTBR
ZC2HC1C
SEPTIN9
DLC1
TUBB4B
UBE2C
SRCAP
LOC730183
MVD
SLC25A19
GBA
CLCN3
GPATCH8
HNRNPC
TRAF4
ATP23
TBL1X
MPV17L2
CELSR3
ADAP1
TANK
CALM2
LBX2
ARHGAP24
CCDC107
HSPE1-MOB4
HSPE1
HSPD1
CDC42EP3
PRR14
CLK1
H4C12
GLRX5
TMEM94
HNRNPUL1
IRS1
DUSP12
ARNTL
YARS1
S100PBP
SNX3
ZNF148
LRRC59
METTL25
CCDC59
TCF4
ZCCHC3
STAT3
FMC1-LUC7L2
FMC1
DDX1
SHB
NCBP2AS2
NCBP2
ABHD2
TMPPE
GLB1
NCOA7
HECTD4
TCERG1
DNAJB1
SLC9A1
ZBTB18
CSRNP1
KPNB1
CYCS
C8orf37
MTRF1L
JUP
STARD4
FILIP1L
BAZ1B
KIAA0319L
NRSN1
LIN28A
HOXC5
HIBADH
ARIH2
CMTR1
ZNF740
CSAD
TOMM40
FAM227B
DTWD1
SERPINB9
MSMO1
ACVR1
GGT1
FAM72D
RSRC1
NBPF1
CCNL1
WBP1L
PEX14
NKIRAS1
NUF2
RAB11A
SLX1B
SLX1A
BOLA2B
ELOVL6
LRCH4
FBXO24
MBD6
FBXO41
TRIP4
LAPTM5
PXMP4
ETV4
LNPEP
NAT8
MFSD6
ARID5A
PSMD3
SRSF2
NFE2
DCP1A
KAT7
MTRNR2L9
HEBP2
DSCAML1
ACTL6A
CEBPE
ELF1
CCPG1
C15orf65
ZNF219
MYADM
HBP1
FASTKD1
USP3
PSMD9
HPD
DYNLT1
MRPL4
SKA2
PRR11
POLR3A
ATXN1L
RASSF5
LONRF3
HOXC6
CALR
MAF1
TMEM9
HMGN4
EEF1AKNMT
SLC7A5
CDCA7L
MANF
HSPA5
SKIV2L
NELFE
BOLA2
RPS6KA1
KHSRP
REC8
CLTC
OTUD4
PKDCC
HINT2
GSTA4
AP3M2
PARP2
MEF2C
IL6ST
C3
TBRG4
TLN1
CREB3
SNRPF
ARMC1
L1CAM
CIC
PLEKHA6
HNRNPL
GLRA1
LOC100289561
HOXC4
TRIM44
RAD50
LDLR
C16orf54
PGP
KEAP1
SLCO4C1
ADAM17
TXNRD1
CABIN1
TOP2B
CPLX2
CNPY3
PEX3
ADAT2
BHLHA15
POR
OPA1
TMEM86A
NR1D2
UBAP2
MFN2
STT3A
STK38
IARS1
AOPEP
RFESD
MAP11
USP15
FAM72C
ADRM1
TIGD2
YIF1A
H6PD
PSMF1
SPSB3
NUBP2
H4C8
PTGES3
BIN2
DIAPH1
SPIN1
RPS24
RBM15
BRD2
CBWD5
ADGRG3
CYBA
IQCH
AAGAB
TMEM259
SLC24A1
BAIAP2
GTF2H2
AKIRIN1
PARL
SPECC1
NBN
KMT5C
CYP1A1
C11orf24
WBP4
RNASEH1
RPS6KB2
NBEAL2
NADK
H4C14
DIAPH3
DYNLL1
C1RL
NCDN
BOLA2-SMG1P6
IBTK
MAPKAPK3
CISH
GBE1
MAP3K3
ZBTB45
FGR
TMBIM6
MED9
H2AZ2
DENND4B
SEMA5B
SIRT4
SERTAD2
SPAG7
FAM162A
CCDC58
TMEM222
VIRMA
SLC35E3
PXYLP1
CNOT1
E2F3
TMCO6
GRHL3
MTHFD1L
MFSD8
ABHD18
CDKN2D
CEP70
FAM72A
SH3TC1
TLE3
CBWD3
HESX1
NIBAN2
MAN2C1
SLC11A2
ACAT2
PKM
ZNF77
SEPTIN2
PWWP2A
HDLBP
LEKR1
WNT10B
PIWIL2
WDR25
WARS1
MAD2L1BP
ZFYVE21
XRCC3
CD38
PIK3AP1
AKAP1
SLC35E2A
CLIC4
GATAD2A
DRAP1
C11orf68
PLIN2
PTP4A2
DZIP3
CIP2A
MTHFR
AGT
TMX2
MED19
OTX1
EIF4A3
GRWD1
LFNG
C12orf65
SRPRA
TRIAP1
PMPCB
BCAR3
MED23
KLF17
IDH1
NFE2L1
FGFRL1
TMEM217
TBC1D22B
RNF139
THUMPD3
PACSIN2
PDK2
MTMR12
MTERF4
H2AX
H4C3
MSANTD4
AK2
ZDHHC4
HNRNPA1
RNF34
MAPKBP1
TOB2
RPS8
MRPS23
NFE2L2
TBCCD1
IFRD2
ZC3H6
MAEA
STMN3
C6orf89
SERPINB6
SLC33A1
AURKAIP1
UBL7
KATNA1
MLLT11
FAM110A
CDC42SE1
TOM1L2
MIA2
DRC3
DUS1L
CLK2
PPP1R13B
CX3CL1
FGA
SDE2
SPATA1
GTF2H2C_2
GTF2H2C
TRAF2
ARFGAP2
RECQL
GOLT1B
C6orf136
PCK1
ASB1
TEDC1
STK11
HAL
NOTCH2
SLC51B
TRABD
TOP1MT
SLC25A45
SLC39A13
CIPC
UGP2
IL27
LEMD2
DENND2D
MCU
BZW2
LRRC45
CENPX
CTNNB1
PPIB
MGST2
H4C15
ACACA
RBM25
NREP
PLEKHA7
RXRA
PA2G4
TRMT6
MRPS15
MCM8
MVK
HERC5
PSMB3
R3HCC1
RCL1
MAPRE2
BDH1
FDFT1
NME1
FNTA
TLX2
TIMM44
HECTD3
PHF8
PLCB2
ATF3
ZBTB20
UPP1
SNRPD2
QPCTL
KBTBD2
DDIT4
GDPGP1
CIB1
BNIP2
IST1
RCOR3
RASGRP2
CDC25C
SAXO2
EFL1
LRRC37A3
ABCA12
ZNF414
SRP9
FDPS
GMEB2
DROSHA
C5orf22
COQ10A
MYT1L
HHAT
FAM120B
TMEM248
METTL26
RBM27
ANAPC5
RPLP0
NMNAT1
LZIC
SHFL
MAP2K1
CENPA
COQ8A
BOD1L1
DUSP4
ZBTB17
MC1R
SIPA1
PRDM1
LIX1
IFNGR1
JAK3
DMD
NUDT15