ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX21236746 | IMR-32
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◣ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

RWDD1
NUP85
EFTUD2
CCDC103
PSMD12
ZNF335
HADHB
HADHA
GOSR2
MRPS7
GGA3
SUDS3
RABL2B
POLR3F
DZANK1
RABL2A
NVL
TSN
RPS12
BLCAP
MAPKAPK5
PAK1IP1
C6orf52
CACTIN
RBBP5
POLR2E
RPS27A
CLHC1
VTI1B
SLC35B1
TSNAX
EXOSC5
BCKDHA
PNO1
REXO1
NME6
ZRANB2
NCLN
NUP205
ISCU
SART3
RABGGTB
PSMD1
DCTN1
LYRM4
FARS2
C17orf80
FAM104A
COX7A2L
VARS1
C19orf48
HSPA9
PI4KB
SELENOF
HS2ST1
PES1
SEC61B
STAM
OAZ3
GOLGA5
VDAC2
RPL21
COMMD1
CCT4
IQCG
RPL35A
TMED1
UPF2
TMEM101
TTC8
FARSB
XPNPEP3
ST13
NDUFA4
MRPL11
ATP5MG
SUPV3L1
PSMG2
CEP76
TBCK
AIMP1
USP1
IRGQ
ZNF576
MRPS5
DYNC1LI2
APOM
BAG6
SMC2
UFM1
ACTR10
CAPRIN1
IPO13
ANAPC7
DPH6
SRD5A1
NSUN2
STAM2
PCBP1
RPS29
LRR1
PROSER1
NHLRC3
RPS23
ATP6AP1L
SUCLG1
DDX39B
PAF1
MED29
CDC73
EIF4ENIF1
GMEB2
PDAP1
BUD31
ICE1
ADK
AP3M1
STK36
RNF25
RBKS
BABAM2
TAF9
RAD17
AK6
MLEC
C16orf91
SKP1
PIN4
RPN1
UBE2I
RPS10-NUDT3
RPS10
OSGEP
APEX1
GORAB
ZBTB18
NDUFA10
SF3B3
COG4
BICRA
SEC11C
MRPL38
LIMA1
GTF3C4
DDX31
PTGES2
PCGF1
MRTO4
EMC1
ARHGAP11A-SCG5
ARHGAP11A
ZNF383
KIAA0319
GADD45GIP1
CCDC43
AXDND1
WDR74
SNRPD2
QPCTL
ALKBH5
NFATC4
TM9SF1
APBA1
HSPA1B
LRRC43
UBAP2
RPS24
RPL7
RDH10
DUSP12
CBFA2T2
GLT8D1
SPCS1
NHLH2
ANK3
PKN2
PAGR1
EYS
GBA
EIF4H
CHN1
SRSF11
LRRC40
CHD8
NELFA
WRAP53
NRXN1
RTBDN
EIF2S3
MYCN
PHOX2B
MICOS13
HSD11B1L
CNPY2
TCHP
MEPCE
ZCWPW1
RARA
MTRNR2L8
CBX5
R3HCC1
TOMM20
CLTC
LEMD2
RBM25
CS
MAN2C1
MLLT11
CDC42SE1
RUNDC3A
EBF3
ANKLE2
GATAD2A
TBC1D16
CCDC40
DDX1
DGKZ
PTPN3
TNFRSF19
KRTAP3-3
SIRT4
HSPE1-MOB4
HSPE1
HSPD1
NBAS
ARHGEF1
ACVR1
TCF4
CBX3
HNRNPA2B1
YTHDF2
RRM2
CLASP2
ELAVL4
FAM162A
CCDC58
GOLGA8Q
TIMM10
ZNF521
MAD2L1BP
DYRK1B
RUNX1T1
CMTR1
SLC24A1
MTMR14
CLVS1
IDUA
TANC1
VMP1
PTRH2
MTF2
DBNDD1
PDHX
APIP
LTBP4
TMEM210
CIPC
SLC26A11
MLF2
IL6ST
GSTP1
CNNM2
GGA1
VPS50
HEPACAM2
ACTA2
UFSP2
MARCHF7
ZCCHC4
EFCAB2
ATG101
COX7A2
PAXBP1
PPP6R1
TMEM38A
SMIM7
SMARCD2
DHX8
ATF7IP
PCBP2
RPS7
SCAF8
HECTD3
SECISBP2L
TCP1
MRPL18
CYTH3
TSPAN11
CCDC174
DDIT3
MFAP4
SMAD7
PANK2
BRD4
APLP1
ARL14EP
RBM39
USP9X
ZNF331
C1orf194
MTRNR2L2
PLEKHA6
SF3B2
FYN
ZNF121
TXNDC11
CYB561D1
FAM110A
ETAA1
KDM3A
ARIH1
MRPL12
UQCRC2
KIAA1217
CASK
BRWD1
SORBS2
POLR1H
KCNT2
STAT3
NCBP3
HEXIM2
PRPF3
TIAM2
TMEM244
ZFP36L1
IRAK1BP1
PARP2
BROX
AIDA
QPRT
BMF
PRKCSH
CCDC151
ZNF496
SERTAD3
PDGFRA
ZNF608
TNPO2
USP32
RAD51D
CSRNP3
MDC1
MYT1L
PAN2
IGF2BP3
TMEM127
CIAO1
CALM2
COPS4
DUS1L
ZNF787
SLC25A28
NKIRAS2
DNAJC7
PRDM10
SLC25A25
FKBP5
ZSCAN12
SPHK2
RPL18
RPL26
HMGB1
USPL1
CALR
MGP
DRAP1
C11orf68
ZBTB26
NME1
TLN1
CREB3
CDC42EP2
ELF1
WBP4
NUCKS1
RPS26
FAM222B
PRR14
TMEM259
RUNDC1
PTGES3L-AARSD1
PTGES3L
GOLGA8O
RARB
EBF1
RNASEH2A
RAD52
BAZ2A
CTBP2
ACTB
KIAA1191
SOX11
PCBD2
RBMS3
B3GALT2
GOLGA8R
PDE12
ZNF76
PRPF6
ADRM1
SMIM18
NEURL2
CTSA
POLDIP3
TMEM60
PHTF2
MRPS23
LMAN2
FNTA
UBE2Z
TBPL1
FBXW7
H4C12
ALMS1
RBM4
PLSCR5
NCAM1
RCOR1
TMBIM4
UBB
MAP3K3
TLX2
RAB30
TRAP1
CDKN2AIPNL
RBM6
TAF13
OGFR
ZNF629
PARP9
DTX3L
PRPF8
PRPSAP1
COPS7A
CEP170
SDCCAG8
HNMT
UCHL5
RO60
RPS27L
OAZ1
ZDHHC4
C6orf89
DHX35
SH2B1
LETMD1
POLG
MFSD11
SRSF2
PKM
EIF4A3
CDIPT
GTF3C5
HCFC2
GLT8D2
NAP1L1
PRKAG2
CHD9
H1-10
C18orf25
RPL27
RPAIN
NUP88
NREP
KRTAP10-5
LRATD1
CLIC4
MCC
MCL1
DNAL4
ACTG1
HNRNPD
C12orf57
WDPCP
MDH1
ID1
GAA
RPL7L1
TP53BP1
TMEM94
MMP20
PTPN13
EIF1AD
BANF1
ASH2L
SDHAF4
SDE2
DDX23
KEAP1
DCLRE1B
AP4B1
SLC16A3
SEZ6L2
ASPHD1
RACK1
AFAP1
LNPEP
EFNB1
PMEPA1
SRP9
MAP3K14
SLA
SFXN2
ARL3
NEUROG2
ZGPAT
ARFRP1
NEUROG3
HES1
SKIL
SPATC1L
VEZT
FGD6
FLOT1
PMAIP1
HOXA4
NDUFS7
NEUROG1
ATOH1
CCDC200
SP2
DHRS3
BNIP3
BBS9
KAT6B
IGFBP2
GPR108
TTI2
ZNF746
HOXA2
DNM2
TPRA1
ID2
TEPSIN
NDUFAF8
P4HB
MINDY2
TBX2
CLGN
ZFHX3
DOLPP1
STX18
RAB5B
KANSL3
CAMTA1
DONSON
UPF3A
NPAS4
ANK2
TLE4
ATF6
SP5
PDHB
OTUD7B
KATNB1
RBPJ
FRA10AC1
PGK1
DPP9
PRUNE2
GATA4
MTMR4
DUSP6
HUS1
FOXP1
ZNF687
XKR7
TBX3
ARRDC4
ARSG
NRL
KIF21B
MRPS31
ALKBH7
ST18
CNOT2
RFX1
HOXA3
NFKBIA
STIP1
NR2F1
OSBP
TLE2
RMND5A
DCAF11
INSM1
PDE4D
PPCDC
RARG
PCNA
IQSEC3
ZFHX4
SOD2
ATP5F1B
GPCPD1
RNF207
MRPL34
SLC45A4
MDM2
KMT5A
LPCAT3
PPP6R3
SMIM20
SP1
MALRD1
ANKHD1-EIF4EBP3
ANKHD1
EIF2AK3
SNX16
KAZALD1
MACROH2A1
GRSF1
CRLS1
GADD45G
TLE6
KNL1
KCNAB2
TMEM70
SHF
SACM1L
MYRIP
METTL11B
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
SMG6
PRMT5
DAGLB
EIF3D
RBBP7
NLK
FBXO31
ANKRD28
SLC30A4
COX5A
ZNF503
SERPINE1
RAB37
RTN4
SREBF1
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
NKD1
ARHGEF10L
ILF2
GATD3B
GATD3A
CEP41
RHBDD1
CDS2
PRKACA
TDRKH
DIABLO
EVI5L
NCOA2
ARID4A
LUC7L2
TOP2A
PNKD
SEC14L1
G3BP1
HTR5A
MBD2
BFSP1
WTAP
KMT2A
ARHGAP4
TRIB1
AIFM2
TCTEX1D4
BTBD19
TIGD1
EIF4E2
USP42
DUSP9
NRSN2
IQGAP2
RNF149
NR2C1
GOT1
RASSF2
NEDD9
SH3BP2
INAFM2
ING1
PIKFYVE
HES3
HMGCS1
IRF9
CCDC88A
TUBGCP3
ACYP1
B4GAT1
ROGDI
FAM107B
EIF1B
CPSF4L
NHLRC1
CMSS1
SCAP
BHLHE40
ADM
EXOSC4
EPM2A
ANKS4B
STX16
LCK
TSPAN4
GFOD1
POLR3E
PARK7
NANP
HPCAL1
NEO1
PRDM12
HSP90B1
CYB5R4
PCTP
ICAM1
FAAP24
CEP89
ANP32E
MPND
LTBR
ZC2HC1C
SEPTIN9
DLC1
TUBB4B
UBE2C
SRCAP
LOC730183
MVD
POLR2J3
SLC25A19
CLCN3
GPATCH8
HNRNPC
TRAF4
ATP23
TBL1X
MPV17L2
CELSR3
ADAP1
TANK
CASC3
LBX2
ARHGAP24
CCDC107
CDC42EP3
CLK1
GLRX5
HNRNPUL1
IRS1
ARNTL
YARS1
S100PBP
SNX3
HOXB4
ZNF148
LRRC59
METTL25
CCDC59
LPIN1
ZCCHC3
FMC1-LUC7L2
FMC1
SHB
NCBP2AS2
NCBP2
ABHD2
TMPPE
GLB1
NCOA7
HECTD4
TCERG1
DNAJB1
SLC9A1
CSRNP1
KPNB1
CYCS
C8orf37
MTRF1L
JUP
STARD4
FILIP1L
BAZ1B
KIAA0319L
NRSN1
LIN28A
HOXC5
HIBADH
ARIH2
ZNF740
CSAD
TOMM40
FAM227B
DTWD1
SERPINB9
MSMO1
GGT1
FAM72D
RSRC1
NBPF1
CCNL1
WBP1L
PEX14
NKIRAS1
NUF2
RAB11A
SLX1B
SLX1A
BOLA2B
ELOVL6
LRCH4
FBXO24
MBD6
VOPP1
FBXO41
TRIP4
LAPTM5
PXMP4
ETV4
NAT8
MFSD6
ARID5A
PSMD3
NFE2
DCP1A
KAT7
MTRNR2L9
HEBP2
DSCAML1
ACTL6A
CEBPE
CCPG1
C15orf65
ZNF219
MYADM
HBP1
FASTKD1
USP3
PSMD9
HPD
DYNLT1
MRPL4
SKA2
PRR11
POLR3A
ATXN1L
RASSF5
LONRF3
RGS12
HOXC6
GFRA3
CPVL
RAI14
MAF1
TMEM9
HMGN4
EEF1AKNMT
SLC7A5
CDCA7L
MANF
HSPA5
SKIV2L
NELFE
BOLA2
RPS6KA1
KHSRP
REC8
OTUD4
PKDCC
HINT2
GSTA4
AP3M2
MEF2C
C3
TBRG4
SNRPF
ARMC1
L1CAM
CIC
HNRNPL
GLRA1
LOC100289561
HOXC4
TRIM44
RAD50
LDLR
CLDN2
C16orf54
PGP
SLCO4C1
TRIM41
ADAM17
TXNRD1
CABIN1
TOP2B
CPLX2
CNPY3
PEX3
ADAT2
BHLHA15
CHN2
POR
OPA1
TMEM86A
NR1D2
MFN2
STT3A
STK38
IARS1
AOPEP
RFESD
MAP11
USP15
FAM72C
TIGD2
YIF1A
H6PD
PSMF1
SPSB3
NUBP2
H4C8
PTGES3
BIN2
DIAPH1
SPIN1
RBM15
BRD2
CBWD5
ADGRG3
CYBA
IQCH
AAGAB
BAIAP2
GTF2H2
AKIRIN1
PARL
SPECC1
KDM1A
NBN
KMT5C
CYP1A1
C11orf24
RNASEH1
RPS6KB2
NBEAL2
NADK
H4C14
DIAPH3
KAT6A
DYNLL1
C1RL
NCDN
BOLA2-SMG1P6
IBTK
MAPKAPK3
CISH
GBE1
ZBTB45
FGR
TMBIM6
MED9
H2AZ2
DENND4B
SEMA5B
TBC1D8
SERTAD2
SPAG7
ZNF292
TMEM222
VIRMA
SLC35E3
PXYLP1
CNOT1
E2F3
TMCO6
GRHL3
MTHFD1L
MFSD8
ABHD18
CDKN2D
CEP70
FAM72A
SH3TC1
TLE3
CBWD3
HESX1
NIBAN2
SLC11A2
ACAT2
ZNF77