ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX6039039 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◣ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

RABL2B
ZNF335
RABL2A
PSMD1
DYNC1LI2
PSMG2
CEP76
CACTIN
NME6
IPO13
POLR3F
DZANK1
MAPKAPK5
SUDS3
EFTUD2
CCDC103
NVL
NEUROG3
DPH6
VTI1B
NUP85
VDAC2
DCTN1
RPL21
C19orf48
NUP205
TBCK
AIMP1
HSPA9
NCLN
STAM
GOSR2
MRPS7
GGA3
TSNAX
RWDD1
POLR2E
SKP1
HADHB
HADHA
STAM2
TTC8
SEC61B
PNO1
IRGQ
ZNF576
SLC35B1
ATP5MG
RPS23
ATP6AP1L
MRPS5
SRD5A1
NSUN2
PAK1IP1
C6orf52
SMC2
BLCAP
UPF2
TSN
RBKS
BABAM2
VARS1
FARSB
CAPRIN1
PDAP1
BUD31
EIF4ENIF1
REXO1
SUPV3L1
PES1
COX7A2L
ACTR10
LYRM4
FARS2
EXOSC5
BCKDHA
TMED1
SELENOF
HS2ST1
GOLGA5
ZRANB2
FGFRL1
IQCG
RPL35A
C17orf80
FAM104A
USP1
TM9SF1
PI4KB
PSMD12
RBBP5
ICE1
ADK
AP3M1
NDUFA4
RPS27A
CLHC1
PTGES2
PAF1
MED29
COMMD1
CCT4
VEZT
FGD6
NEUROG1
ISCU
SART3
MRPL11
RPS12
UFM1
RABGGTB
OSGEP
APEX1
XPNPEP3
ST13
PCBP1
ANAPC7
ATOH1
APOM
BAG6
PROSER1
NHLRC3
DDX39B
SF3B3
COG4
ST18
MYRIP
RBL2
SHB
HESX1
PIN4
STK36
RNF25
EIF2S3
TAF9
RAD17
AK6
RPS29
LRR1
LPIN1
SEC11C
DENND1A
PMAIP1
ARHGAP11A-SCG5
ARHGAP11A
GADD45GIP1
KLF17
SUCLG1
BNIP3
NDUFA10
CALM2
CCDC92
TPRA1
HES1
UBE2I
GADD45G
SKIL
CERKL
RPL7
RDH10
TLE2
PCBD2
RBPJ
ZNF383
CCDC200
GATA4
MRTO4
EMC1
PDHX
APIP
TMEM70
ACOT2
NEUROG2
AMOT
GORAB
HSPA1B
TIGD1
EIF4E2
GTF3C4
DDX31
DTNB
NKIRAS1
NR1D2
UPF3A
ALKBH5
TMPPE
GLB1
OTX2
CNPY2
RPN1
GSR
ZGPAT
ARFRP1
CDC73
OAZ3
AXDND1
PRUNE2
MBD2
APLN
ZNF503
C15orf61
CPVL
CHN2
GPR108
PKIB
LDLRAD4
GLT8D1
SPCS1
BICRA
ANKLE2
DSCAML1
SCAMP4
ADAT3
RAN
DUSP4
SRSF11
LRRC40
PLA1A
MACROH2A1
CABIN1
ZNF397
INKA2
KIF21B
INSM1
DLX4
CBX3
BAMBI
RSPO4
MRPL38
ATP6V0A4
FOXP2
DDX3X
PDE12
MEPCE
ZCWPW1
CIAO2A
TBC1D8
SLC40A1
JAKMIP1
OLIG3
HNRNPD
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
RYBP
CLDN15
ARHGAP28
GRHL2
METTL11B
PLEKHA5
ANXA9
DLL4
LIN28A
NCOA2
RBBP8NL
STRADA
MAST2
TAS2R7
TCHP
IGF2
USP17L15
PAH
ASCL1
RARA
CDS1
MID1
SNX16
RUNX1T1
RNF32
PDCD2
CHPT1
ZNF746
VENTX
BTBD3
H3-3A
DCLRE1C
ACOT1
SGK1
TBL1XR1
YAP1
PXMP2
POLE
KAZALD1
C16orf91
LCOR
RIMS2
CEMP1
ZNF853
TRAP1
RBBP7
PCLO
KAT6B
ARL14EP
PRDM10
KDM1A
EIF4H
ZNF891
ZNF10
HOXB9
WDR74
MTCH2
OTX1
RIMS1
ZNF81
TENT4B
RPS10-NUDT3
RPS10
SPIN1
KCNJ4
PTPRG
FAM53B
CHD8
SP7
CCDC169-SOHLH2
CCDC169
HINT1
LIX1
CENPBD1
STRA6
FANK1
WNT3
OTP
PODXL
CCDC88C
APBB1IP
PAX7
FAM120B
TRIM45
GOLM1
SUCLG2
MACROD2
ERI1
COMT
ALDH3A2
PLAGL1
GNG4
CNOT2
UPK2
NELFA
PRSS47
SHBG
FXR2
PKNOX1
SEMA3C
CDX1
DUSP12
YTHDF2
KIF26A
BTG1
EVC2
DHRS3
GEMIN7
SH2B1
NFAM1
SYDE2
ZNF292
SERTAD2
REV1
ANKRD28
PARP16
MTRNR2L2
RARB
SPATC1L
MTRNR2L8
FLOT1
HOXA4
NDUFS7
SP2
BBS9
IGFBP2
TTI2
NEURL2
CTSA
HOXA2
DNM2
ID2
TEPSIN
NDUFAF8
P4HB
NBAS
MINDY2
TBX2
CLGN
ZFHX3
DOLPP1
STX18
RAB5B
KANSL3
CAMTA1
DONSON
NPAS4
ANK2
TLE4
ATF6
SP5
PDHB
OTUD7B
KATNB1
FRA10AC1
PGK1
DPP9
MTMR4
DUSP6
HUS1
FOXP1
ZNF687
XKR7
PANK2
TBX3
CCDC174
ARRDC4
NRL
MRPS31
ALKBH7
RFX1
HOXA3
NFKBIA
SMARCD2
STIP1
NR2F1
OSBP
RMND5A
DCAF11
PDE4D
PPCDC
RARG
PCNA
IQSEC3
ZFHX4
SOD2
ATP5F1B
POLDIP3
GPCPD1
RNF207
MRPL34
SLC45A4
MDM2
KMT5A
LPCAT3
PPP6R3
ZNF608
SMIM20
SP1
MALRD1
ANKHD1-EIF4EBP3
ANKHD1
ARSG
EIF2AK3
GRSF1
CRLS1
TLE6
KNL1
KCNAB2
SHF
SACM1L
HEXIM2
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
SMG6
PRMT5
POLG
DAGLB
CBFA2T2
EIF3D
NLK
FBXO31
SLC30A4
COX5A
QPRT
SERPINE1
RAB37
RTN4
SREBF1
NKD1
ARHGEF10L
ILF2
GATD3B
GATD3A
CEP41
RHBDD1
HNMT
CDS2
PRKACA
TDRKH
DIABLO
EVI5L
MTF2
ARID4A
LUC7L2
TOP2A
PNKD
SEC14L1
G3BP1
HTR5A
BFSP1
WTAP
KDM3A
KMT2A
ARHGAP4
TRIB1
AIFM2
TCTEX1D4
HMGB1
BTBD19
USP42
ID1
DUSP9
NRSN2
IQGAP2
RNF149
NR2C1
GOT1
RASSF2
NEDD9
SH3BP2
INAFM2
ING1
PIKFYVE
HES3
HMGCS1
IRF9
CCDC88A
TUBGCP3
ACYP1
B4GAT1
ROGDI
FAM107B
EIF1B
CPSF4L
TNFRSF19
ZNF76
NHLRC1
CMSS1
SCAP
BHLHE40
ADM
EXOSC4
EPM2A
ANKS4B
STX16
LCK
TSPAN4
GFOD1
POLR3E
PARK7
NANP
HPCAL1
NEO1
PRDM12
HSP90B1
CYB5R4
PCTP
ICAM1
FAAP24
CEP89
ANP32E
MPND
LTBR
ZC2HC1C
DLC1
TUBB4B
USPL1
UBE2C
TMEM60
PHTF2
SRCAP
LOC730183
MVD
POLR2J3
SLC25A19
CS
MFSD11
CLCN3
GPATCH8
HNRNPC
TRAF4
ATP23
TBL1X
MPV17L2
CELSR3
ADAP1
TANK
CASC3
LBX2
ARHGAP24
CCDC107
SEPTIN9
CDC42EP3
CLK1
GLRX5
HNRNPUL1
IRS1
ARNTL
YARS1
S100PBP
SNX3
HOXB4
ZNF148
TXNDC11
LRRC59
METTL25
CCDC59
ZCCHC3
FMC1-LUC7L2
FMC1
NCBP2AS2
NCBP2
ABHD2
NCOA7
HECTD4
TCERG1
DNAJB1
SLC9A1
CSRNP1
KPNB1
CYCS
C8orf37
MTRF1L
TMEM94
JUP
STARD4
FILIP1L
BAZ1B
KIAA0319L
NRSN1
H4C12
HOXC5
HIBADH
ARIH2
ZNF740
CSAD
PRR14
TOMM40
FAM227B
DTWD1
SERPINB9
MSMO1
CBX5
GGT1
FAM72D
RSRC1
NBPF1
CCNL1
WBP1L
PEX14
NUF2
RAB11A
SLX1B
SLX1A
BOLA2B
ELOVL6
LRCH4
FBXO24
MBD6
VOPP1
FBXO41
LAPTM5
PXMP4
ETV4
NAT8
ARID5A
PSMD3
NFE2
DCP1A
KAT7
MTRNR2L9
HEBP2
ACTL6A
CEBPE
CCPG1
C15orf65
ZNF219
MYADM
HBP1
FASTKD1
USP3
PSMD9
HPD
DYNLT1
MRPL4
SKA2
PRR11
POLR3A
ATXN1L
TRIP4
RASSF5
LONRF3
LNPEP
RGS12
HOXC6
GFRA3
RAI14
PKN2
MAF1
TMEM9
HMGN4
EEF1AKNMT
SLC7A5
CDCA7L
MANF
HSPA5
SKIV2L
NELFE
BOLA2
RPS6KA1
SRSF2
KHSRP
REC8
OTUD4
PKDCC
HINT2
GSTA4
MFSD6
AP3M2
MEF2C
C3
TBRG4
BRWD1
SNRPF
ARMC1
L1CAM
CIC
HNRNPL
GLRA1
LOC100289561
HOXC4
TRIM44
RAD50
LDLR
CLDN2
C16orf54
PGP
SLCO4C1
TRIM41
ADAM17
TXNRD1
TOP2B
CPLX2
CNPY3
PEX3
ADAT2
BHLHA15
POR
OPA1
TMEM86A
MFN2
STT3A
STK38
IARS1
AOPEP
RFESD
MAP11
USP15
FAM72C
TIGD2
YIF1A
H6PD
PSMF1
KEAP1
SPSB3
NUBP2
TCF4
H4C8
PTGES3
BIN2
DIAPH1
RBM15
BRD2
ELF1
CBWD5
ADGRG3
CYBA
IQCH
AAGAB
BAIAP2
GTF2H2
AKIRIN1
PARL
SPECC1
NBN
KMT5C
CYP1A1
C11orf24
KIAA0319
RNASEH1
RPS6KB2
NBEAL2
NADK
DIAPH3
KAT6A
DYNLL1
C1RL
NCDN
BOLA2-SMG1P6
IBTK
MAPKAPK3
CISH
GBE1
ADRM1
ZBTB45
FGR
TMBIM6
MED9
HNRNPA2B1
H2AZ2
DENND4B
SEMA5B
PARP2
SPAG7
TMEM222
VIRMA
PXYLP1
CNOT1
E2F3
TMCO6
GRHL3
MTHFD1L
MFSD8
ABHD18
CDKN2D
CEP70
FAM72A
SH3TC1
TLE3
STAT3
CBWD3
NIBAN2
TMEM259
SLC11A2
ACAT2
ZNF77
SEPTIN2
PWWP2A
HDLBP
LEKR1
WNT10B
PIWIL2
WDR25
WARS1
ZFYVE21
XRCC3
CD38
PIK3AP1
AKAP1
SLC35E2A
PLIN2
PTP4A2
DZIP3
CIP2A
MAP3K3
MTHFR
AGT
TMX2
PEX2
MED19
GRWD1
LFNG
C12orf65
SRPRA
TRIAP1
PMPCB
BCAR3
MED23
IDH1
NFE2L1
TMEM217
TBC1D22B
RNF139
THUMPD3
SLC24A1
GFER
PACSIN2
PDK2
MTMR12
MTERF4
PKM
H2AX
H4C3
H4C14
MSANTD4
AK2
CMTR1
HNRNPA1
RNF34
MAPKBP1
TOB2
CLIC4
RPS8
NFE2L2
WBP4
TBCCD1
IFRD2
ZC3H6
MAEA
STMN3
SERPINB6
SLC33A1
AURKAIP1
EIF4A3
UBL7
KATNA1
VANGL2
TOM1L2
MIA2
DRC3
CALR
CLK2
PPP1R13B
CX3CL1
FGA
SPATA1
GTF2H2C
GTF2H2C_2
TRAF2
DRAP1
C11orf68
ZNF341
ARFGAP2
RECQL
GOLT1B
C6orf136
PCK1
ASB1
TEDC1
STK11
HAL
NOTCH2
SLC51B
TRABD
TOP1MT
SLC25A45
TLN1
CREB3
SLC39A13
UGP2
IL27
DENND2D
MCU
BZW2
LRRC45
CENPX
CTNNB1
PPIB
MGST2
ACACA
PLEKHA7
RXRA
PA2G4
TRMT6
MRPS15
MCM8
MVK
HERC5
PSMB3
RCL1
ZDHHC4
MAPRE2
BDH1
FDFT1
TIMM44
PHF8
PLCB2
ATF3
ZBTB20
UPP1
KBTBD2
DDIT4
GDPGP1
CIB1
BNIP2
SLC35E3
IST1
RCOR3
RASGRP2
CDC25C
SAXO2
EFL1
SDE2
MRPS23
LRRC37A3
ABCA12
ZNF414
FDPS
C6orf89
DROSHA
C5orf22
COQ10A
HHAT
TMEM248
METTL26
RBM27
ANAPC5
RPLP0
NMNAT1