ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9607666 | NTERA-2
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◣ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZGPAT
ARFRP1
TRABD
OTP
KIF21B
PRSS47
LFNG
CYP1A1
KCNJ4
GALP
EXOC2
SH3D21
GJB6
PLEKHA6
BIRC7
ZNF746
TCTEX1D4
BTBD19
GLI1
CCDC120
ADGRA2
CATSPER4
TYROBP
SH3BP4
METTL11B
BHLHA15
SERPINB9
KMT5C
WFIKKN1
SKIL
GABRB2
KCNQ4
DNAJB5
TTYH3
MDM2
CPLX1
FBXO41
HTR6
TLX2
TPRA1
SH2B1
COX5A
UNKL
PLPP2
SERPINB6
LZTFL1
KCNF1
ADAMTS2
CCDC12
EXTL1
PRELID3B
APOBEC3G
PDE12
BRI3
NEURL2
CTSA
MEGF8
YPEL3
DIPK1B
USP3
APOBEC3D
CASD1
RUNX1T1
SERPINE1
PANK2
SLC26A11
GPR108
MAP11
FXYD3
ATP2B2
ATP6V0A4
STEAP3
PLCB2
AKIRIN1
RNF208
CRIP2
C15orf39
NBPF15
SEMA4G
TRAPPC3
MAP7D1
TCF7
ARHGEF16
ANKRD33
TP53I3
MBD2
GATD3B
GATD3A
SNX16
CORO6
ADAMTSL4
GALNT9
DMPK
CYB5R2
RPS8
UCKL1
CHCHD10
LMF1
SOX8
HAPLN3
MINDY2
TLE6
ADGRA1
SPACA6
SOX5
CNOT2
RARB
PRTG
RBKS
BABAM2
AP1B1
GPR162
PCTP
GUCA2A
SKIDA1
CFAP20DC
DUSP23
ZFHX3
DONSON
HECTD4
WBP1L
NR2C1
CPA1
MCF2L
NRSN2
LHCGR
SNX12
ZNF615
SULF2
HUS1
AGAP2
MEGF9
APC2
TP53INP1
ANHX
SF3A3
MDK
SVOPL
CLDN2
DUSP4
NR2C2
HPN
NPM2
CST6
BRD2
ACP4
SLC39A14
YIF1B
TSPAN18
PRAM1
UROC1
C17orf113
MTRNR2L2
CEBPE
WDR74
POLD1
LOXL1
HMX3
SOCS2
RPRM
MTRNR2L8
AP5B1
FGF16
CLEC4C
KANSL3
C16orf70
CEND1
STX18
FAM120B
TEX264
ARHGEF3
FAM110D
ZNF512B
ANKRD28
DUS1L
COQ10A
SHH
APOA5
PTGES3
UTS2R
DMAP1
LHX2
TTLL10
TTC7B
SMIM5
CYSRT1
RARA
GPCPD1
CDCA7L
LOC105372440
KIAA1522
MSI1
UPF3A
TMEM132B
GPSM1
SRCAP
LOC730183
IL17RD
FOXP1
ZNF346
SLC51B
SBNO2
XKR7
NUF2
PCGF3
SLC4A2
CDK5
GARS1
CYBA
BIRC6
KIF13B
S100A16
CDC25B
RASSF7
LMNTD2
MACROH2A2
LPCAT3
INTS10
MPP2
BRICD5
CTSZ
FAM3B
NINJ2
NAALAD2
CLIP1
SIPA1
PDE4C
OTOP1
GBA
ENO2
MCPH1
HHIPL1
CCDC85C
HINT2
SERPING1
ISCA1
THEM4
MAN2C1
SERTAD2
ENTPD8
SERPINA10
AIFM2
CHKB
TNC
CORO7-PAM16
CORO7
CNR1
PDE2A
FOXJ3
TSPAN14
SEMA6D
TMEM240
ZNF385A
FAM169A
SLC30A4
PCCA
RSBN1L
NAA38
CHD4
SMG6
CYP11A1
STK11
PELATON
PUS1
HNRNPD
THPO
ICAM1
RFX1
OBSCN
CA14
SLC11A2
STRA6
BOLA3
KCNH2
PHLDA3
NACC1
KAT6A
SAG
XKR8
SFXN4
TTLL8
CCAR2
PTP4A2
GP1BB
BFSP1
DAB2IP
KCNB1
HOMER3
ZNF202
SCARA3
PLIN2
TSGA10IP
TAF6L
SRSF10
SIK3
RIPOR1
TRPM1
SIAH1
NIPSNAP2
CFAP74
ZNF335
RABL2B
RABL2A
RWDD1
PSMD1
MAPKAPK5
NME6
NUP85
CACTIN
SUDS3
POLR3F
DZANK1
EFTUD2
CCDC103
NVL
IPO13
VDAC2
DYNC1LI2
GOSR2
HSPA9
VTI1B
PSMG2
CEP76
NUP205
MRPS7
GGA3
POLR2E
HADHB
HADHA
RPL21
NCLN
EXOSC5
BCKDHA
C19orf48
TBCK
AIMP1
BLCAP
DCTN1
REXO1
TSNAX
SLC35B1
ATP5MG
STAM
TSN
STAM2
SEC61B
FARSB
PSMD12
LYRM4
FARS2
SRD5A1
NSUN2
PNO1
PAK1IP1
C6orf52
RBBP5
PES1
UPF2
SKP1
IRGQ
NDUFA4
ZNF576
COX7A2L
CAPRIN1
ISCU
ACTR10
ZRANB2
TTC8
SUPV3L1
DPH6
IQCG
SART3
GOLGA5
VARS1
PI4KB
TMED1
RPL35A
RPS23
ATP6AP1L
RPS12
SMC2
MRPS5
ANAPC7
C17orf80
RABGGTB
SELENOF
HS2ST1
FAM104A
USP1
MRPL11
PDAP1
BUD31
PCBP1
EIF4ENIF1
UFM1
ADK
XPNPEP3
ST13
RPS27A
CLHC1
AP3M1
ICE1
APOM
PROSER1
NHLRC3
BAG6
COMMD1
CCT4
SF3B3
COG4
OSGEP
APEX1
RPS29
PAF1
MED29
TM9SF1
NEUROG2
DDX39B
LRR1
NEUROG3
PIN4
NDUFA10
OAZ3
SUCLG1
PTGES2
UBE2I
HES1
ARHGAP11A-SCG5
ARHGAP11A
TAF9
RAD17
AK6
STK36
RNF25
MRTO4
EMC1
SPATC1L
VEZT
FGD6
RPL7
RDH10
SEC11C
EIF2S3
GADD45GIP1
BICRA
CDC73
FLOT1
PMAIP1
C16orf91
HOXA4
RPN1
GORAB
NDUFS7
GTF3C4
DDX31
NEUROG1
ATOH1
CNPY2
CCDC200
SP2
DHRS3
BNIP3
ZNF383
BBS9
KAT6B
IGFBP2
MRPL38
GLT8D1
PDHX
APIP
TTI2
PCBD2
HOXA2
ANKLE2
DNM2
NBAS
ID2
TEPSIN
NDUFAF8
P4HB
ALKBH5
RPS10-NUDT3
RPS10
AXDND1
TBX2
CLGN
DOLPP1
RAB5B
CAMTA1
HSPA1B
NPAS4
ANK2
TLE4
ATF6
SP5
PDHB
CBFA2T2
OTUD7B
KATNB1
RBPJ
FRA10AC1
CCDC174
PGK1
DPP9
PRUNE2
SMARCD2
GATA4
MTMR4
DUSP6
ZNF687
TBX3
ARRDC4
ARSG
NRL
SRSF11
MRPS31
QPRT
ALKBH7
ST18
LRRC40
POLDIP3
HOXA3
NFKBIA
STIP1
NR2F1
OSBP
TLE2
SPCS1
RMND5A
DCAF11
INSM1
ZNF608
PDE4D
PPCDC
RARG
PCNA
IQSEC3
ZFHX4
SOD2
ATP5F1B
RNF207
CBX3
MRPL34
SLC45A4
KMT5A
PPP6R3
SMIM20
SP1
CS
MALRD1
ANKHD1-EIF4EBP3
ANKHD1
EIF2AK3
HEXIM2
KAZALD1
MACROH2A1
GRSF1
NELFA
CRLS1
GADD45G
KNL1
KCNAB2
POLG
TMEM70
MLEC
TNFRSF19
SHF
SACM1L
MYRIP
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
MTF2
PKN2
CCDC43
PRMT5
KDM3A
DAGLB
EIF3D
RBBP7
NLK
FBXO31
ZNF503
RAB37
RTN4
HNMT
SREBF1
EIF4H
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
NKD1
HMGB1
ARHGEF10L
ILF2
CEP41
RHBDD1
CDS2
PRKACA
TDRKH
DIABLO
CBX5
TMEM101
KIAA0319
EVI5L
NCOA2
ARID4A
TXNDC11
LUC7L2
TOP2A
ID1
PNKD
SEC14L1
G3BP1
HTR5A
ZNF76
WTAP
KMT2A
PRDM10
ARHGAP4
TRIB1
TIGD1
EIF4E2
USP42
DUSP9
IQGAP2
RNF149
GOT1
RASSF2
NEDD9
USPL1
SH3BP2
TMEM60
PHTF2
INAFM2
ING1
PIKFYVE
HES3
HMGCS1
IRF9
CCDC88A
TUBGCP3
ACYP1
B4GAT1
ROGDI
FAM107B
CHD8
EIF1B
CPSF4L
NHLRC1
HNRNPA2B1
CMSS1
SCAP
BHLHE40
ADM
EXOSC4
EPM2A
YTHDF2
ANKS4B
STX16
LCK
TSPAN4
GFOD1
TCHP
MFSD11
POLR3E
PARK7
NANP
HPCAL1
NEO1
PRDM12
HSP90B1
CYB5R4
PCGF1
FAAP24
CEP89
ANP32E
MPND
LTBR
ZC2HC1C
SEPTIN9
DLC1
TUBB4B
UBE2C
MVD
POLR2J3
SLC25A19
BRWD1
MEPCE
CLCN3
GPATCH8
HNRNPC
TRAF4
ATP23
TBL1X
MPV17L2
CELSR3
ADAP1
TANK
CASC3
CALM2
LBX2
ARHGAP24
CCDC107
HSPE1-MOB4
HSPE1
HSPD1
CDC42EP3
PRR14
CLK1
H4C12
GLRX5
TMEM94
HNRNPUL1
IRS1
DUSP12
ARNTL
YARS1
S100PBP
SNX3
ZCWPW1
HOXB4
ZNF148
LRRC59
METTL25
CCDC59
LPIN1
TCF4
ZCCHC3
STAT3
FMC1-LUC7L2
FMC1
DDX1
SHB
NCBP2AS2
NCBP2
ABHD2
TMPPE
GLB1
NCOA7
TCERG1
DNAJB1
SLC9A1
ZBTB18
CSRNP1
KPNB1
CYCS
C8orf37
MTRF1L
JUP
STARD4
FILIP1L
BAZ1B
KIAA0319L
NRSN1
LIN28A
HOXC5
HIBADH
ARIH2
CMTR1
ZNF740
CSAD
TOMM40
FAM227B
DTWD1
MSMO1
ACVR1
GGT1
FAM72D
RSRC1
NBPF1
CCNL1
PEX14
NKIRAS1
RAB11A
SLX1B
SLX1A
BOLA2B
ELOVL6
LRCH4
FBXO24
MBD6
VOPP1
TRIP4
LAPTM5
PXMP4
ETV4
LNPEP
NAT8
MFSD6
ARID5A
PSMD3
SRSF2
NFE2
DCP1A
KAT7
MTRNR2L9
HEBP2
DSCAML1
ACTL6A
ELF1
CCPG1
C15orf65
ZNF219
MYADM
HBP1
FASTKD1
PSMD9
HPD
DYNLT1
MRPL4
SKA2
PRR11
POLR3A
ATXN1L
RASSF5
LONRF3
RGS12
HOXC6
GFRA3
CPVL
CALR
RAI14
MAF1
TMEM9
HMGN4
EEF1AKNMT
SLC7A5
ARHGEF1
MANF
HSPA5
SKIV2L
NELFE
BOLA2
RPS6KA1
KHSRP
REC8
CLTC
OTUD4
PKDCC
GSTA4
AP3M2
PARP2
MEF2C
IL6ST
C3
TBRG4
TLN1
CREB3
SNRPF
ARMC1
L1CAM
CIC
HNRNPL
GLRA1
LOC100289561
HOXC4
TRIM44
RAD50
LDLR
C16orf54
PGP
KEAP1
SLCO4C1
TRIM41
ADAM17
TXNRD1
CABIN1
TOP2B
CPLX2
CNPY3
PEX3
ADAT2
CHN2
POR
OPA1
TMEM86A
NR1D2
UBAP2
MFN2
STT3A
STK38
IARS1
AOPEP
RFESD
USP15
FAM72C
ADRM1
TIGD2
YIF1A
H6PD
PSMF1
SPSB3
NUBP2
H4C8
BIN2
DIAPH1
SPIN1
RPS24
RBM15
CBWD5
ADGRG3
IQCH
AAGAB
TMEM259
SLC24A1
BAIAP2
GTF2H2
PARL
SPECC1
KDM1A
NBN
C11orf24
WBP4
RNASEH1
RPS6KB2
NBEAL2
NADK
H4C14
DIAPH3
DYNLL1
C1RL
NCDN
BOLA2-SMG1P6
IBTK
MAPKAPK3
CISH
GBE1
MAP3K3
ZBTB45
FGR
TMBIM6
MED9
H2AZ2
DENND4B
SEMA5B
TBC1D8
SIRT4
SPAG7
FAM162A
CCDC58
ZNF292
TMEM222
VIRMA
SLC35E3
PXYLP1
CNOT1
E2F3
TMCO6
GRHL3
MTHFD1L
MFSD8
ABHD18
CDKN2D
CEP70
FAM72A
SH3TC1
TLE3
CBWD3
HESX1
NIBAN2
ACAT2
PKM
ZNF77
SEPTIN2
PWWP2A
HDLBP
LEKR1
WNT10B
PIWIL2
WDR25
WARS1
MAD2L1BP
ZFYVE21
XRCC3
DGKZ
CD38
PIK3AP1
AKAP1
SLC35E2A
CLIC4
GATAD2A
DRAP1
C11orf68
DZIP3
CIP2A
MTHFR
AGT
TMX2
PEX2
MED19
OTX1
EIF4A3
GRWD1
C12orf65