ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX21236745 | IMR-32
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◣ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

EFTUD2
CCDC103
RWDD1
NUP85
GOSR2
MRPS7
GGA3
SUDS3
HADHB
HADHA
NVL
RABL2A
PSMD12
RABL2B
ZNF335
POLR3F
DZANK1
SLC35B1
RBBP5
MAPKAPK5
CACTIN
BLCAP
TSN
TSNAX
RPS12
POLR2E
NME6
ZRANB2
PSMD1
VDAC2
NUP205
VTI1B
PNO1
PAK1IP1
C6orf52
NCLN
STAM
RABGGTB
VARS1
RPL21
EXOSC5
BCKDHA
LYRM4
FARS2
COX7A2L
ISCU
SART3
REXO1
OAZ3
HSPA9
DCTN1
RPS23
ATP6AP1L
C17orf80
FAM104A
ANAPC7
SEC61B
TTC8
PI4KB
PSMG2
CEP76
C19orf48
UPF2
RPS27A
CLHC1
TBCK
AIMP1
CAPRIN1
XPNPEP3
ST13
DYNC1LI2
SUPV3L1
DPH6
IQCG
RPL35A
IRGQ
ZNF576
APOM
BAG6
UFM1
PES1
SELENOF
HS2ST1
MRPS5
COMMD1
CCT4
STAM2
SMC2
ACTR10
ATP5MG
PAF1
MED29
NDUFA4
FARSB
SRD5A1
NSUN2
IPO13
GOLGA5
PCBP1
MRPL11
TMEM101
PROSER1
NHLRC3
SUCLG1
TMED1
USP1
RPN1
SKP1
EIF4ENIF1
RPS29
LRR1
DDX39B
CDC73
GMEB2
ICE1
ADK
AP3M1
C16orf91
NDUFA10
PDAP1
BUD31
PIN4
GORAB
RBKS
BABAM2
TM9SF1
UBE2I
OSGEP
APEX1
GTF3C4
DDX31
TAF9
RAD17
AK6
RPS10-NUDT3
RPS10
DUSP12
WDR74
SF3B3
COG4
MLEC
MRTO4
EMC1
STK36
RNF25
GADD45GIP1
BICRA
SEC11C
SRSF11
LRRC40
MRPL38
PCGF1
AXDND1
MTRNR2L8
UBAP2
ARHGAP11A-SCG5
ARHGAP11A
PTGES2
RPL7
RDH10
ZBTB18
APBA1
CNPY2
PAGR1
WRAP53
CCDC43
NFATC4
RPS24
PKN2
GBA
SNRPD2
QPCTL
YTHDF2
CBX5
EIF2S3
ZNF383
EIF4H
ARHGEF1
KIAA0319
CHD8
PHOX2B
MYCN
CBFA2T2
CHN1
ANK3
HSPA1B
ALKBH5
MICOS13
HSD11B1L
NELFA
HSPE1-MOB4
HSPE1
HSPD1
GLT8D1
SPCS1
EYS
NRXN1
DBNDD1
TOMM20
CS
VPS50
HEPACAM2
PDHX
APIP
RTBDN
TANC1
RRM2
GGA1
MAN2C1
FAM162A
CCDC58
DYRK1B
RBM25
LRRC43
RARA
NHLH2
TBC1D16
CCDC40
KDM3A
SERTAD3
CLTC
ANKLE2
TNFRSF19
DDX1
RUNX1T1
SH2B1
CBX3
HNRNPA2B1
MEPCE
ZCWPW1
CMTR1
MTMR14
HECTD3
KRTAP3-3
GATAD2A
IDUA
SARM1
PIH1D1
MLF2
TIMM10
CCT7
PRADC1
NEURL2
CTSA
DGKZ
CALR
UQCRC2
TCHP
TCP1
MRPL18
C1orf185
CLASP2
TMEM60
PHTF2
BMF
C12orf57
PRDM10
TBPL1
RARB
RAD52
STAT3
CIPC
SLC25A25
BRWD1
NAP1L1
ACVR1
R3HCC1
DDIT3
MTRNR2L2
RUNDC3A
SIRT4
PARP2
ATG101
MMP20
EFNB1
PAXBP1
TLN1
CREB3
ZNF331
CYTH3
H4C14
H4C15
BRD4
RAB30
PHIP
PRKCSH
CCDC151
ATF7IP
TCF4
NEUROG2
ZGPAT
ARFRP1
NEUROG3
HES1
PDE12
SKIL
SPATC1L
VEZT
FGD6
FLOT1
PMAIP1
HOXA4
NDUFS7
NEUROG1
ATOH1
CCDC200
SP2
DHRS3
BNIP3
BBS9
KAT6B
IGFBP2
GPR108
TTI2
ZNF746
PCBD2
HOXA2
DNM2
TPRA1
NBAS
ID2
TEPSIN
NDUFAF8
P4HB
MINDY2
TBX2
CLGN
ZFHX3
DOLPP1
STX18
RAB5B
KANSL3
CAMTA1
DONSON
UPF3A
NPAS4
ANK2
TLE4
ATF6
SP5
PDHB
OTUD7B
KATNB1
PANK2
RBPJ
FRA10AC1
CCDC174
PGK1
DPP9
PRUNE2
SMARCD2
GATA4
MTMR4
DUSP6
HUS1
FOXP1
ZNF687
XKR7
TBX3
ARRDC4
ARSG
NRL
KIF21B
MRPS31
QPRT
ALKBH7
ST18
CNOT2
RFX1
POLDIP3
HOXA3
NFKBIA
STIP1
NR2F1
OSBP
TLE2
RMND5A
DCAF11
INSM1
ZNF608
PDE4D
PPCDC
RARG
PCNA
IQSEC3
ZFHX4
SOD2
ATP5F1B
GPCPD1
RNF207
MRPL34
SLC45A4
MDM2
KMT5A
LPCAT3
PPP6R3
SMIM20
SP1
MALRD1
ANKHD1-EIF4EBP3
ANKHD1
EIF2AK3
HEXIM2
SNX16
KAZALD1
MACROH2A1
GRSF1
CRLS1
GADD45G
TLE6
KNL1
HNRNPD
KCNAB2
POLG
TMEM70
SHF
SACM1L
MYRIP
METTL11B
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
MTF2
SMG6
PRMT5
DAGLB
EIF3D
RBBP7
NLK
FBXO31
ANKRD28
SLC30A4
COX5A
ZNF503
SERPINE1
RAB37
RTN4
HNMT
SREBF1
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
NKD1
HMGB1
ARHGEF10L
ILF2
GATD3B
GATD3A
CEP41
RHBDD1
CDS2
PRKACA
TDRKH
DIABLO
EVI5L
NCOA2
ARID4A
TXNDC11
LUC7L2
TOP2A
ID1
PNKD
SEC14L1
G3BP1
HTR5A
MBD2
ZNF76
BFSP1
WTAP
KMT2A
ARHGAP4
TRIB1
AIFM2
TCTEX1D4
BTBD19
TIGD1
EIF4E2
USP42
DUSP9
NRSN2
IQGAP2
RNF149
NR2C1
GOT1
RASSF2
NEDD9
USPL1
SH3BP2
INAFM2
ING1
PIKFYVE
HES3
HMGCS1
IRF9
CCDC88A
TUBGCP3
ACYP1
B4GAT1
ROGDI
FAM107B
EIF1B
CPSF4L
NHLRC1
CMSS1
SCAP
BHLHE40
ADM
EXOSC4
EPM2A
ANKS4B
STX16
LCK
TSPAN4
GFOD1
MFSD11
POLR3E
PARK7
NANP
HPCAL1
NEO1
PRDM12
HSP90B1
CYB5R4
PCTP
ICAM1
FAAP24
CEP89
ANP32E
MPND
LTBR
ZC2HC1C
SEPTIN9
DLC1
TUBB4B
UBE2C
SRCAP
LOC730183
MVD
POLR2J3
SLC25A19
CLCN3
GPATCH8
HNRNPC
TRAF4
ATP23
TBL1X
MPV17L2
CELSR3
ADAP1
TANK
CASC3
CALM2
LBX2
ARHGAP24
CCDC107
CDC42EP3
PRR14
CLK1
H4C12
GLRX5
TMEM94
HNRNPUL1
IRS1
ARNTL
YARS1
S100PBP
SNX3
HOXB4
ZNF148
LRRC59
METTL25
CCDC59
LPIN1
ZCCHC3
FMC1-LUC7L2
FMC1
SHB
NCBP2AS2
NCBP2
ABHD2
TMPPE
GLB1
NCOA7
HECTD4
TCERG1
DNAJB1
SLC9A1
CSRNP1
KPNB1
CYCS
C8orf37
MTRF1L
JUP
STARD4
FILIP1L
BAZ1B
KIAA0319L
NRSN1
LIN28A
HOXC5
HIBADH
ARIH2
ZNF740
CSAD
TOMM40
FAM227B
DTWD1
SERPINB9
MSMO1
GGT1
FAM72D
RSRC1
NBPF1
CCNL1
WBP1L
PEX14
NKIRAS1
NUF2
RAB11A
SLX1B
SLX1A
BOLA2B
ELOVL6
LRCH4
FBXO24
MBD6
VOPP1
FBXO41
TRIP4
LAPTM5
PXMP4
ETV4
LNPEP
NAT8
MFSD6
ARID5A
PSMD3
SRSF2
NFE2
DCP1A
KAT7
MTRNR2L9
HEBP2
DSCAML1
ACTL6A
CEBPE
ELF1
CCPG1
C15orf65
ZNF219
MYADM
HBP1
FASTKD1
USP3
PSMD9
HPD
DYNLT1
MRPL4
SKA2
PRR11
POLR3A
ATXN1L
RASSF5
LONRF3
RGS12
HOXC6
GFRA3
CPVL
RAI14
MAF1
TMEM9
HMGN4
EEF1AKNMT
SLC7A5
CDCA7L
MANF
HSPA5
SKIV2L
NELFE
BOLA2
RPS6KA1
KHSRP
REC8
OTUD4
PKDCC
HINT2
GSTA4
AP3M2
MEF2C
IL6ST
C3
TBRG4
SNRPF
ARMC1
L1CAM
CIC
PLEKHA6
HNRNPL
GLRA1
LOC100289561
HOXC4
TRIM44
RAD50
LDLR
CLDN2
C16orf54
PGP
KEAP1
SLCO4C1
TRIM41
ADAM17
TXNRD1
CABIN1
TOP2B
CPLX2
CNPY3
PEX3
ADAT2
BHLHA15
CHN2
POR
OPA1
TMEM86A
NR1D2
MFN2
STT3A
STK38
IARS1
AOPEP
RFESD
MAP11
USP15
FAM72C
ADRM1
TIGD2
YIF1A
H6PD
PSMF1
SPSB3
NUBP2
H4C8
PTGES3
BIN2
DIAPH1
SPIN1
RBM15
BRD2
CBWD5
ADGRG3
CYBA
IQCH
AAGAB
TMEM259
SLC24A1
BAIAP2
GTF2H2
AKIRIN1
PARL
SPECC1
KDM1A
NBN
KMT5C
CYP1A1
C11orf24
WBP4
RNASEH1
RPS6KB2
NBEAL2
NADK
DIAPH3
KAT6A
DYNLL1
C1RL
NCDN
BOLA2-SMG1P6
IBTK
MAPKAPK3
CISH
GBE1
MAP3K3
ZBTB45
FGR
TMBIM6
MED9
H2AZ2
DENND4B
SEMA5B
TBC1D8
SERTAD2
SPAG7
ZNF292
TMEM222
VIRMA
SLC35E3
PXYLP1
CNOT1
E2F3
TMCO6
GRHL3
MTHFD1L
MFSD8
ABHD18
CDKN2D
CEP70
FAM72A
SH3TC1
TLE3
CBWD3
HESX1
NIBAN2
SLC11A2
ACAT2
PKM
ZNF77
SEPTIN2
PWWP2A
HDLBP
LEKR1
WNT10B
PIWIL2
WDR25
WARS1
MAD2L1BP
ZFYVE21
XRCC3
CD38
PIK3AP1
AKAP1
SLC35E2A
CLIC4
DRAP1
C11orf68
PLIN2
PTP4A2
DZIP3
CIP2A
MTHFR
AGT
TMX2
PEX2
MED19
OTX1
EIF4A3
GRWD1
LFNG
C12orf65
SRPRA
TRIAP1
PMPCB
BCAR3
MED23
KLF17
IDH1
NFE2L1
FGFRL1
TMEM217
TBC1D22B
RNF139
THUMPD3
GFER
PACSIN2
PDK2
MTMR12
MTERF4
H2AX
H4C3
MSANTD4
AK2
ZDHHC4
HNRNPA1
DDX3X
RNF34
MAPKBP1
TOB2
RPS8
MRPS23
NFE2L2
TBCCD1
IFRD2
ZC3H6
MAEA
STMN3
C6orf89
SERPINB6
SLC33A1
AURKAIP1
UBL7
KATNA1
VANGL2
MLLT11
FAM110A
CDC42SE1
TOM1L2
MIA2
DRC3
DUS1L
CLK2
PPP1R13B
CX3CL1
FGA
SDE2
SPATA1
GTF2H2C_2
GTF2H2C
TRAF2
ZNF341
ARFGAP2
RECQL
GOLT1B
C6orf136
PCK1
ASB1
TEDC1
STK11
HAL
NOTCH2
SLC51B
TRABD
TOP1MT
SLC25A45
SLC39A13
UGP2
IL27
LEMD2
DENND2D
MCU
BZW2
LRRC45
CENPX
CTNNB1
PPIB
MGST2
ACACA
NREP
PLEKHA7
RXRA
PA2G4
TRMT6
MRPS15
MCM8
MVK
HERC5
PSMB3
RCL1
MAPRE2
BDH1
FDFT1
NME1
FNTA
TLX2
TIMM44
PHF8
PLCB2
ATF3
ZBTB20
UPP1
KBTBD2
DDIT4
GDPGP1
CIB1
BNIP2
IST1
RCOR3
RASGRP2
CDC25C
SAXO2
EFL1
LRRC37A3
ABCA12
ZNF414
SRP9
FDPS
DROSHA
C5orf22
COQ10A
MYT1L
HHAT
FAM120B
TMEM248
METTL26
RBM27
ANAPC5
RPLP0
NMNAT1
LZIC
SHFL
MAP2K1
CENPA
COQ8A
BOD1L1
DUSP4
ZBTB17
MC1R
SIPA1
PRDM1