ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX8814860 | BE(2)-C
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◣ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ATF6
TBX2
EIF3D
RFPL1
HTR3B
MFSD6
TBX3
SEMA5B
STARD4
DIABLO
CBFA2T2
NRSN1
PIK3C2G
FRA10AC1
KIAA0319
AOPEP
MTRNR2L2
ABCA12
MYT1L
ZNF148
LSMEM1
SRGAP2C
SRGAP2B
STX18
SCHIP1
TNFRSF19
DRGX
DEFB130B
DEFB130A
RGS7BP
ZNF335
RAPGEF2
KIF1A
HNMT
PTPRR
MYRFL
HOXC6
HOXC4
TTI2
MTRNR2L8
QPRT
DLC1
POLR2E
RARB
ATP5MG
IMPG2
RP1L1
DUSP6
GRWD1
RABL2B
RPS29
ISCU
SART3
NOMO3
NOMO1
ZFHX3
FGL1
UFM1
OTOR
PAM
RWDD1
EXOSC5
BCKDHA
RABEPK
TYRP1
PHOX2A
IQCG
RPL35A
RBBP5
LMO3
SNX6
GOSR2
DAB2IP
SUDS3
RPS12
COX7A2L
TCF4
CHRNA9
GTDC1
PSMD12
AMBN
SEC61B
HAO1
RPS23
ATP6AP1L
PES1
P2RY12
TSNAX
RUNX1T1
BRD4
ANK2
NBN
FARSB
KCNK2
EFTUD2
CCDC103
ELAVL4
NUP205
BLCAP
POLR3F
DZANK1
ABAT
CCDC182
SOX5
NOMO2
ZNF608
DNAH8
STARD13
LYRM4
FARS2
SRD5A1
NSUN2
CACTIN
C19orf48
CRYGC
UBA5
AGR3
C17orf80
FAM104A
WDR74
RIMS1
NUP85
RPL21
NVL
ANAPC7
FCER1A
RARA
MARCOL
LMO1
ALG5
DHRS3
PSMD1
PDAP1
BUD31
SPAG9
ADK
AP3M1
SPATS1
IL17F
HHAT
MRPL11
HSPA9
PI4KB
ZFHX4
MTRNR2L9
OAZ3
UPF2
EYS
SRPK2
SUPV3L1
GOLGA5
ANKDD1B
MYT1
STK36
RNF25
SLC25A44
MRPS7
GGA3
DDX39B
TMED1
GPR83
MAP3K3
SLC7A2
SF3B3
COG4
CHRDL2
OSGEP
APEX1
TRIM24
DYNC1LI2
DEFB136
LNP1
B4GAT1
ESRRG
PCGF1
FLVCR1
PCDH15
PAK1IP1
C6orf52
CDC42EP3
VDAC2
OIP5
NUSAP1
MPP4
RFLNA
RABL2A
KLHL24
CLIP4
MCU
PWWP2B
ANKRD44
SSUH2
BCO2
CDH12
VPS33B
VTI1B
TMC3
KCNJ16
ESRRB
GALNT14
ACTR10
KIF6
TIAM2
APOM
BAG6
NDUFA4
RNF111
ZNF235
MKRN3
GUCA1C
REXO1
PSD3
GABRA1
SORBS2
PHACTR2
SMC2
IRS2
PIN4
RIMBP2
SUCNR1
WDR49
GLRX
CYTH3
HECW2
PDE4B
SHC4
HEXIM2
SYBU
EGFR
HADHB
HADHA
IL13RA2
SUCLG1
NEURL2
CTSA
MAP4
GPR1
MFSD11
MAPK10
SCRG1
TOM1L1
TXNRD1
SLC35B1
BBS9
MAPKAPK5
TBC1D9
SAMD13
STAM
ZRANB2
MLLT11
CDC42SE1
PHOX2B
DMD
PUS7L
IRAK4
ADGRD1
C8A
RBP1
SKP1
NCAM2
CALHM5
NREP
OSBPL7
CHODL
PLCH1
ETFRF1
CFAP94
CCKAR
PALMD
SLC26A7
RABGAP1L
ZNF8
CLCN3
POLR3A
PBX2
SLC8A1
TM4SF4
CLGN
CAPRIN1
ASXL2
FNIP2
ARHGEF12
EFCAB2
SLC25A12
TAMALIN
TMEM187
MBNL3
USO1
HAND2
PROSER1
NHLRC3
MEF2C
FHL1
BCL9L
ELAVL2
ADD3
PNO1
NRG1
FAM110B
CREB3L2
SULT6B1
PCNX4
MGP
P2RY6
FEV
ARHGEF33
GFRA3
TBCK
AIMP1
XPNPEP3
ST13
MOB4
C16orf91
GORAB
OSBPL8
ADAMTSL2
GSE1
RPL7
RDH10
NCOA6
ARHGAP19
ZBTB18
SOAT1
POPDC2
ASB15
ATP6V0E2
PDE12
TTC13
LRIT2
AXDND1
CHD8
LRRN3
RABGGTB
HEXB
MFSD8
ABHD18
SAMD9L
CD36
PDE4D
SYTL3
ZNF503
RSPRY1
PSME3IP1
CABLES1
MCC
NCLN
RPS27A
CLHC1
ABLIM1
OPTN
CCDC3
CERS3
ERVFRD-1
HDX
DBH
ATXN7L3B
H2BC5
CD200R1
MAP2K4
FGF1
CS
HDAC9
DCTN1
DPH6
TLE4
PTPRB
STAM2
GGT1
POLDIP3
BDNF
CDC73
SELENOF
HS2ST1
RSRC1
OTUD4
ERMP1
C1orf185
GPM6B
TAF9
RAD17
AK6
ATP2C1
RARG
PI15
ZNF736
TM2D1
AP2A2
CD302
PRSS58
NET1
EXTL2
PTGES2
LIX1
PKIA
SNAP91
UBA3
CREB5
CCND1
GRXCR1
RFESD
ITGAV
NALCN
NCALD
CNPY2
REC8
PIK3AP1
GRAP2
TMX4
GPRC5A
CCSER1
USP1
RAPGEF4
CECR2
PNN
SMIM20
B3GALT2
KCNJ8
ARHGAP11A-SCG5
ARHGAP11A
CHRM5
HIBADH
LRGUK
EIF4ENIF1
P2RX6
ELF1
TLX2
TNFSF13B
NME6
SLC26A11
ABCB8
HYKK
SOX4
DKC1
SMIM18
TAS2R20
ELMO1
MEPE
SULT1C4
CBX5
CFAP20
ICE1
CXXC4
NKX6-1
NR2F1
NEO1
LIN28B
CLU
ID2
NFAM1
NBEA
PCDHAC2
MAB21L1
RPN1
IRF9
RGPD2
RGPD1
TMEM41B
SLC25A46
FNBP4
TLR7
FFAR3
PKDCC
CYTH1
ZFP30
STAP1
FBXO9
STRA6
ANO3
RNF19A
TRAF3IP2
SNAI2
MYLK4
MTMR4
PTPRO
LMO7
RUFY3
NDUFA10
IGF2BP3
PLEKHG2
AP1S2
SHF
GPR85
UNC80
DIPK1A
DMC1
IRGQ
ZNF576
ZNF383
DDX46
FFAR2
DZIP3
CIP2A
OXR1
GTF3C4
DDX31
DUSP26
CALM2
AMMECR1
BAZ1A
RAG2
CYLC2
CASP4
MYH15
JMJD1C
LRRC8B
SYT16
CTSS
PAF1
MED29
TM9SF1
EIF2S3
TXNDC11
PYROXD2
LOC645177
C12orf77
THBS2
PCDHGC4
FMO1
MINDY2
PRMT5
CLVS1
PJVK
KBTBD3
HTR1F
DDX52
LGSN
ANO1
GRSF1
SCAF11
GEMIN8
SLC7A11
TBL1X
DDR2
MGAT4C
TMED7-TICAM2
TMED7
TOMM34
ZNF219
DCTD
TMEM253
IPO13
RPS10-NUDT3
RPS10
CDKN2D
SLC25A45
LDHA
KIFC1
PPARD
DCBLD2
KIFBP
ID3
BRINP3
CLDN22
HMGA1
DLG2
TMEM126B
PDC
UBE2D3
KCNIP4
FHL2
RPS24
LRR1
PHLDA1
RGL1
VOPP1
PLEKHA6
TMEM45B
MACIR
RGMA
SH2B1
CAMTA1
UPP2
GRAMD4
IFT81
KCNA10
KIF26B
ADGRL2
YPEL5
CNTN1
LANCL1
CPS1
RPUSD2
DCLK1
HSPA1L
HSPA1A
GRIA1
GPATCH8
COX7A2
GARNL3
LYN
SCML4
FAM107B
CMC2
RBKS
BABAM2
MBNL1
HOXA3
ACTA2
DHTKD1
KLKB1
SCN2A
DBT
THYN1
ACAD8
TFDP2
TCF12
RXFP4
NEFM
ARHGAP18
ZMYM2
HSD17B11
MTUS1
SIAH3
HSPA1B
SHB
HOXC5
ATF3
UGT2B7
SLC18A1
DENR
APBA1
NAP1L1
CACFD1
CNTNAP4
CEP70
PTGR2
TRAPPC3L
ELOVL6
NCOA7
PSMD4
UBE2L5
PSMG2
CEP76
GADD45GIP1
NFKBIZ
RGMB
BICRAL
GEMIN2
TRPM4
SH2D4B
LARP4
DIRAS3
RBP3
GLCCI1
MAP2
SHOX2
RHBDD1
MEPCE
ZCWPW1
CLK2
WNT5B
SHD
ATRX
ZMAT4
NCOA2
GFOD1
CCPG1
C15orf65
HSDL2
ATF7IP
WDHD1
SOCS4
BOD1
METTL7A
LEMD1
PAAF1
FAR2
DIMT1
KLHL32
LINGO2
CMSS1
FILIP1L
IRF2BPL
NRXN1
DNAJC19
TJP2
MAB21L2
RBM25
PUM2
GABRG2
ARHGEF10L
BRD2
ZBTB20
MDC1
FNDC5
SUOX
ZNF81
MAGEB3
BLMH
DDX6
DPAGT1
CHD6
EEF1AKNMT
PEX2
ST3GAL6
UBXN2A
P2RY14
REPS1
NIPSNAP3A
SCG2
PARP2
MB21D2
WASF1
SENP6
ZNF703
LRIG2
LIMCH1
ZNF770
DDC
MTHFS
C5orf63
SH3BP5
BICRA
UNC79
BTBD7
TNFSF18
CRISPLD1
DONSON
CREB1
COQ10B
GTPBP1
CALD1
MRPL38
CCDC174
RAI14
TMEM218
EGLN2
FEM1A
PRR13
GTF2H5
AMBRA1
CPB1
SLC4A5
MYL1
SEMA4B
EIF4EBP1
CHD7
METTL25
CCDC59
MEIS3
FGD4
PIK3R1
ZNF76
SLITRK6
NRCAM
KRT28
PHGDH
RNF7
TM4SF1
CRABP2
ST8SIA4
PCDHB4
ST7
H3C12
PTH2R
TTC8
CEP41
KMT5C
TNRC18
ZNF780B
DNAJA2
VEPH1
MAPRE2
ZBED3
OLFML3
PCDHGC3
FLOT1
NRL
DCAF11
VANGL2
CTR9
CNOT10
ACTB
BCAT1
PSMA6
RIOX1
TMEM243
NPAS1
POMT2
GSTZ1
WFIKKN2
IL33
UGT2B11
SMCO1
CSNK1A1
AMOTL1
GATA4
WBP4
KPNA2
SLC17A2
LRP12
FDCSP
VARS1
CHD9
BAZ2A
RNF14
RBM12
CPNE1
RAB3GAP2
GHR
TBL1XR1
HNRNPH1
GOLPH3L
CNIH1
LUM
UBE2I
TLE2
EPM2A
SCOC
TTC21B
NEIL2
DHX16
BATF2
TERF1
FRMD3
CEP128
C15orf62
LPAR6
GPBAR1
TOMM40L
ZNF510
PGAP1
LIPC
MMRN1
HAS3
ECM2
CAMLG
HLCS
ZNRF2
TP53BP1
PPHLN1
SYNPO2
TLE6
DCLRE1B
AP4B1
PRRC2A
CHD1
PALLD
ACACB
PCBP1
CLASP2
JPT1
MAPK1IP1L
SLC35F2
OGA
COG3
HEBP2
UAP1
ZBTB38
CLOCK
PGBD5
CNTN5
SEC14L1
EYA1
POLG
SLC30A7
SEC24B
CGA
KMT5A
LPCAT3
TDRKH
LATS1
SETX
CHN1
APBA2
SEMA3A
KMT2A
MRPS5
SEC11C
OTUD7B
MYADM
SKIDA1
ETFA
UBE2J1
GOLGA7
SMDT1
TK2
DUSP23
PACRG
MARCKS
CDIN1
DEGS1
JAKMIP2
PRKACB
SIX2
NYAP2
PLN
PLCXD3
PPP1R3D
FAM217B
TMEM65
RMDN2
GNG4
HOXC10
GABARAPL2
CTNND1
FAM72D
FAM72C
CHEK1
POLR1D
PROS1
LNX2
MLLT10
RAB3C
SLC4A7
OPA1
BLOC1S5
IQUB
NCAM1
TACC2
ARHGAP28
CHD1L
KLF7
NT5C3A
UTP23
KIDINS220
CSRNP3
DPYSL3
CEP126
ANP32E
SDE2
TSACC
PRKAG2
PPP1R10
MRPS18B
DCTN6
UTRN
RELN
FOXP1
NXPE3
CCNT1
RXYLT1
PLPP5
DCT
RPRD2
KCNT2
AGTR1
DPP6
GSTCD
AIG1
CREBL2
UBQLN2
SETD7
DNM1L
PPP2R2B
THY1
TSN
CCDC43
KBTBD2
MEIS1
TAF13
CELF1
IQCB1
EAF2
ABCF3
TPH2
FAM98B
MAML1
SAP18
IL19
QDPR
ANKRD6
MC4R
ADCYAP1
SLC23A1
OR6S1
IL22
POU2F1
MTERF1
NSUN3
DHFR2
TARS1
USP9X
DNAJC1
ANAPC15
CCNG1
TAS2R7
CNKSR3
CCNH
C7orf33
PWWP2A
RMND1
ARMT1
ALG10B
RNF145
CD200
BMP5
BIRC6
ABL1
NNT
FBRS
SPG21
C2CD5
RPL22L1
MAST4
OXCT1
HSD17B7
MTA3
ZBTB10
HBP1