ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX6039040 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◣ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

RABL2B
RABL2A
ZNF335
PSMD1
IPO13
POLR3F
DZANK1
DYNC1LI2
CACTIN
NME6
NUP205
EFTUD2
CCDC103
MAPKAPK5
NEUROG3
PSMG2
CEP76
SUDS3
RPL21
NUP85
MRPS7
GGA3
VDAC2
NVL
DCTN1
HSPA9
RWDD1
VTI1B
GOSR2
TBCK
AIMP1
TSNAX
DPH6
STAM2
SKP1
HADHB
HADHA
STAM
POLR2E
C19orf48
RBKS
BABAM2
ATP5MG
SEC61B
PAK1IP1
C6orf52
SRD5A1
NSUN2
SMC2
EXOSC5
BCKDHA
IRGQ
ZNF576
ACTR10
MRPS5
NCLN
COX7A2L
TMED1
SLC35B1
TTC8
PI4KB
TSN
PNO1
NEUROG1
LYRM4
FARS2
PDAP1
BUD31
GOLGA5
FARSB
ADK
AP3M1
BLCAP
PES1
SUPV3L1
VARS1
C17orf80
FAM104A
REXO1
RPS23
ATP6AP1L
IQCG
RPL35A
EIF4ENIF1
CAPRIN1
UPF2
COMMD1
CCT4
ZRANB2
TM9SF1
SELENOF
HS2ST1
RBBP5
ISCU
SART3
NDUFA4
USP1
PSMD12
ANAPC7
ICE1
PCBP1
UFM1
TMEM70
APOM
BAG6
PROSER1
NHLRC3
OSGEP
APEX1
PAF1
MED29
MYRIP
SF3B3
COG4
ATOH1
MRPL11
RABGGTB
XPNPEP3
ST13
ST18
CABIN1
RPS12
PTGES2
PIN4
VEZT
FGD6
ZGPAT
ARFRP1
RPS29
LRR1
NDUFA10
RPS27A
CLHC1
EIF2S3
RBPJ
DDX39B
GADD45GIP1
RBL2
BNIP3
RPL7
RDH10
MBD2
HES1
TAF9
RAD17
AK6
DENND1A
GORAB
PCBD2
GPR108
DTNB
LPIN1
ZNF746
ANKLE2
NEUROG2
HSPA1B
SHB
GADD45G
MRTO4
EMC1
ACOT2
PDE12
SEC11C
STK36
RNF25
PRUNE2
FGFRL1
CCDC92
PMAIP1
PDHX
APIP
HESX1
TLE2
SKIL
GTF3C4
DDX31
AXDND1
RYBP
NKIRAS1
NR1D2
ARHGAP11A-SCG5
ARHGAP11A
ZNF704
APLN
ALKBH5
TPRA1
ZNF383
SUCLG1
PLA1A
RPN1
SPIN1
TIGD1
EIF4E2
CDC73
MAST2
ACOT1
ID2
RARA
GABRB2
TLE3
UBE2I
GLT8D1
SPCS1
DLX4
OAZ3
SRSF11
LRRC40
UPF3A
S100A10
GSR
CCDC200
RTL10
GNB1L
FOXP1
LIN28A
CNPY2
RAN
CERKL
MELTF
HOXB9
RIMS1
RUNX1T1
BFSP1
RSPO4
RBBP7
OTX2
NEFH
METRN
B3GNT4
CALM2
CDX1
PRSS47
GSX1
AP1B1
GC
TBC1D8
PDHB
TMPPE
GLB1
DUSP4
GATA4
LCOR
PKDCC
MKRN2
KAT6B
RPS10-NUDT3
RPS10
UBXN11
CD52
KIF21B
MTCH2
ADM
APBB1IP
DUSP14
C15orf61
CCDC174
WDR74
DDX3X
TNFRSF19
PCLO
OTP
SERTAD2
MRPL38
SMARCA4
KMT5A
CIAO2A
BICRA
RNF207
GTF3A
CPVL
CHN2
STRADA
KAZALD1
FOXP2
KLF17
SNRPA
C19orf54
LPCAT3
EIF4H
IRX4
C16orf91
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
GRHL2
HNRNPD
ZNF891
ZNF10
MEF2B
NRDE2
PAH
SMAGP
ASCL1
SEPTIN2
HDLBP
HECTD3
OTUD7B
REC8
NCOA2
KMT5C
H3-3A
RNF32
PLEKHA6
CNR1
SLC30A4
TCHP
TCF7
SCAMP4
ADAT3
KCNJ4
CLDN15
JAKMIP1
WNT3
DYNLT1
ATP6V0A4
MACROH2A1
RARB
JAK1
TAS2R7
ZNF397
VENTX
METTL11B
BRWD1
JUP
NEURL2
CTSA
ZNF395
FAM53B
CEMP1
STX18
NR2C1
USP17L15
MARVELD3
KMT2A
NRG1
SH2B1
PCTP
CDS1
SEMA6D
PEX14
MEPCE
ZCWPW1
RPS24
MECOM
ESRRG
EOMES
BEND4
MAPRE1
SERTAD3
FBXL4
MAPK12
ANXA9
CYP26A1
RUSC2
SH3YL1
ACP1
KCNS3
HINT1
MDM2
PRELID3B
AKAP10
BAMBI
COX5A
ADAM17
ERI1
SOD2
ACAT2
TARBP2
PRKD1
ACYP1
ROGDI
ZC2HC1C
SLC35E3
ZBTB25
ZBTB1
PKIB
EVC2
NELFA
PRDM10
NANP
TRAP1
ZNF248
PLXNB1
CNOT2
CS
UFSP2
KDM3A
DNAJB5
CENPBD1
CTF1
BTBD3
PFN2
RBBP8NL
MRPL34
LIX1
ABHD8
YTHDF2
CDC42EP3
SLC40A1
METTL27
CLGN
ZSCAN30
CDC42SE2
KDM4C
BBS9
KCNQ4
MINDY2
ING1
PSMA7
KDM7A
SGK1
PIGU
PTPRG
CLK1
FAM162A
CCDC58
RBMS3
CTSZ
IKZF2
SLC25A6
CPLX1
RPS3A
DHRS3
METTL25
CCDC59
ZDHHC17
INSM1
KAT6A
CTBP2
ACTB
TMEM211
MUC20
GATD3B
GATD3A
GLI1
RGPD8
RGPD5
EIF5
BCO2
KLHL4
DONSON
PEX2
PDE4D
ZNF485
ZNF341
MDK
SNX3
ABCC6
ZBTB17
NOL4
ZBTB20
RAPH1
HIC2
HSPA4L
LAD1
PPP1R13B
CMTR1
RPS8
SYDE2
EPS8
TRIP12
FBXO36
RILPL1
SLC11A2
ZFAND6
CLCN3
OTX1
NAA40
NPNT
GOLM2
IGFBP2
RHOBTB1
MTRNR2L2
MTRNR2L8
SPATC1L
FLOT1
HOXA4
NDUFS7
SP2
TTI2
HOXA2
DNM2
NBAS
TEPSIN
NDUFAF8
P4HB
TBX2
ZFHX3
DOLPP1
RAB5B
KANSL3
CAMTA1
NPAS4
ANK2
TLE4
ATF6
SP5
CBFA2T2
KATNB1
PANK2
FRA10AC1
PGK1
DPP9
SMARCD2
MTMR4
DUSP6
HUS1
ZNF687
XKR7
TBX3
ARRDC4
ARSG
NRL
MRPS31
QPRT
ALKBH7
RFX1
POLDIP3
HOXA3
NFKBIA
STIP1
NR2F1
OSBP
RMND5A
DCAF11
ZNF608
PPCDC
RARG
PCNA
IQSEC3
ZFHX4
ATP5F1B
GPCPD1
CBX3
SLC45A4
PPP6R3
SMIM20
SP1
MALRD1
ANKHD1-EIF4EBP3
ANKHD1
EIF2AK3
HEXIM2
SNX16
GRSF1
CRLS1
TLE6
KNL1
KCNAB2
POLG
MLEC
SHF
SACM1L
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
MTF2
PKN2
CCDC43
SMG6
PRMT5
DAGLB
EIF3D
NLK
FBXO31
ANKRD28
ZNF503
SERPINE1
RAB37
RTN4
HNMT
SREBF1
NKD1
HMGB1
ARHGEF10L
ILF2
CEP41
RHBDD1
CDS2
PRKACA
TDRKH
DIABLO
CBX5
TMEM101
KIAA0319
EVI5L
ARID4A
TXNDC11
LUC7L2
TOP2A
ID1
PNKD
SEC14L1
G3BP1
HTR5A
ZNF76
WTAP
ARHGAP4
TRIB1
AIFM2
TCTEX1D4
BTBD19
USP42
DUSP9
NRSN2
IQGAP2
RNF149
GOT1
RASSF2
NEDD9
USPL1
SH3BP2
TMEM60
PHTF2
INAFM2
PIKFYVE
HES3
HMGCS1
IRF9
CCDC88A
TUBGCP3
B4GAT1
FAM107B
CHD8
EIF1B
CPSF4L
NHLRC1
HNRNPA2B1
CMSS1
SCAP
BHLHE40
EXOSC4
EPM2A
ANKS4B
STX16
LCK
TSPAN4
GFOD1
MFSD11
POLR3E
PARK7
HPCAL1
NEO1
PRDM12
HSP90B1
CYB5R4
PCGF1
ICAM1
FAAP24
CEP89
ANP32E
MPND
LTBR
SEPTIN9
DLC1
TUBB4B
UBE2C
SRCAP
LOC730183
MVD
POLR2J3
SLC25A19
GBA
GPATCH8
HNRNPC
TRAF4
ATP23
TBL1X
MPV17L2
CELSR3
ADAP1
TANK
CASC3
LBX2
ARHGAP24
CCDC107
HSPE1-MOB4
HSPE1
HSPD1
PRR14
H4C12
GLRX5
TMEM94
HNRNPUL1
IRS1
DUSP12
ARNTL
YARS1
S100PBP
HOXB4
ZNF148
LRRC59
TCF4
ZCCHC3
STAT3
FMC1-LUC7L2
FMC1
DDX1
NCBP2AS2
NCBP2
ABHD2
NCOA7
HECTD4
TCERG1
DNAJB1
SLC9A1
ZBTB18
CSRNP1
KPNB1
CYCS
C8orf37
MTRF1L
STARD4
FILIP1L
BAZ1B
KIAA0319L
NRSN1
HOXC5
HIBADH
ARIH2
ZNF740
CSAD
TOMM40
FAM227B
DTWD1
SERPINB9
MSMO1
ACVR1
GGT1
FAM72D
RSRC1
NBPF1
CCNL1
WBP1L
NUF2
RAB11A
SLX1B
SLX1A
BOLA2B
ELOVL6
LRCH4
FBXO24
MBD6
VOPP1
FBXO41
TRIP4
LAPTM5
PXMP4
ETV4
LNPEP
NAT8
MFSD6
ARID5A
PSMD3
SRSF2
NFE2
DCP1A
KAT7
MTRNR2L9
HEBP2
DSCAML1
ACTL6A
CEBPE
ELF1
CCPG1
C15orf65
ZNF219
MYADM
HBP1
FASTKD1
USP3
PSMD9
HPD
MRPL4
SKA2
PRR11
POLR3A
ATXN1L
RASSF5
LONRF3
RGS12
HOXC6
GFRA3
CALR
RAI14
MAF1
TMEM9
HMGN4
EEF1AKNMT
SLC7A5
ARHGEF1
CDCA7L
MANF
HSPA5
SKIV2L
NELFE
BOLA2
RPS6KA1
KHSRP
CLTC
OTUD4
HINT2
GSTA4
AP3M2
PARP2
MEF2C
IL6ST
C3
TBRG4
TLN1
CREB3
SNRPF
ARMC1
L1CAM
CIC
HNRNPL
GLRA1
LOC100289561
HOXC4
TRIM44
RAD50
LDLR
CLDN2
C16orf54
PGP
KEAP1
SLCO4C1
TRIM41
TXNRD1
TOP2B
CPLX2
CNPY3
PEX3
ADAT2
BHLHA15
POR
OPA1
TMEM86A
UBAP2
MFN2
STT3A
STK38
IARS1
AOPEP
RFESD
MAP11
USP15
FAM72C
ADRM1
TIGD2
YIF1A
H6PD
PSMF1
SPSB3
NUBP2
H4C8
PTGES3
BIN2
DIAPH1
RBM15
BRD2
CBWD5
ADGRG3
CYBA
IQCH
AAGAB
TMEM259
SLC24A1
BAIAP2
GTF2H2
AKIRIN1
PARL
SPECC1
KDM1A
NBN
CYP1A1
C11orf24
WBP4
RNASEH1
RPS6KB2
NBEAL2
NADK
H4C14
DIAPH3
DYNLL1
C1RL
NCDN
BOLA2-SMG1P6
IBTK
MAPKAPK3
CISH
GBE1
MAP3K3
ZBTB45
FGR
TMBIM6
MED9
H2AZ2
DENND4B
SEMA5B
SIRT4
SPAG7
ZNF292
TMEM222
VIRMA
PXYLP1
CNOT1
E2F3
TMCO6
GRHL3
MTHFD1L
MFSD8
ABHD18
CDKN2D
CEP70
FAM72A
SH3TC1
CBWD3
NIBAN2
MAN2C1
PKM
ZNF77
PWWP2A
LEKR1
WNT10B
PIWIL2
WDR25
WARS1
MAD2L1BP
ZFYVE21
XRCC3
DGKZ
CD38
PIK3AP1
AKAP1
SLC35E2A
CLIC4
GATAD2A
DRAP1
C11orf68
PLIN2
PTP4A2
DZIP3
CIP2A
MTHFR
AGT
TMX2
MED19
EIF4A3
GRWD1
LFNG
C12orf65
SRPRA
TRIAP1
PMPCB
BCAR3
MED23
IDH1
NFE2L1
TMEM217
TBC1D22B
RNF139
THUMPD3
GFER
PACSIN2
PDK2
MTMR12
MTERF4
H2AX
H4C3
MSANTD4
AK2
ZDHHC4
HNRNPA1
RNF34
MAPKBP1
TOB2
MRPS23
NFE2L2
TBCCD1
IFRD2
ZC3H6
MAEA
STMN3
C6orf89
SERPINB6
SLC33A1
AURKAIP1
UBL7
KATNA1
VANGL2
MLLT11
FAM110A
CDC42SE1
TOM1L2