ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584304 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◣ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
RABL2B
NEUROG2
RABL2A
NUP205
POLR3F
DZANK1
PSMD1
NME6
NEUROG3
MAPKAPK5
TBCK
AIMP1
NVL
HSPA9
POLR2E
NUP85
CACTIN
IPO13
DYNC1LI2
BLCAP
PES1
RWDD1
SUDS3
RPL21
FARSB
C19orf48
EFTUD2
CCDC103
VDAC2
GOSR2
PAK1IP1
C6orf52
MRPS7
GGA3
VTI1B
NCLN
ISCU
SART3
ACTR10
DCTN1
PSMG2
CEP76
PNO1
SEC61B
SF3B3
COG4
HES1
EXOSC5
BCKDHA
SUPV3L1
UFM1
SKP1
TSN
IQCG
RPL35A
ATP5MG
PCBP1
TSNAX
PSMD12
ANAPC7
UPF2
MRPL11
RPS27A
CLHC1
SLC35B1
STAM2
STAM
LYRM4
FARS2
COX7A2L
DPH6
REXO1
SRD5A1
NSUN2
IRGQ
ZNF576
ZRANB2
HADHB
HADHA
TMED1
RPS12
RBBP5
TTC8
VEZT
FGD6
SELENOF
HS2ST1
PI4KB
SMC2
CAPRIN1
MRPS5
C17orf80
FAM104A
XPNPEP3
ST13
ATOH1
PAF1
MED29
OSGEP
APEX1
IGFBP2
NDUFA4
RBKS
BABAM2
VARS1
NBAS
EIF4ENIF1
GADD45G
GOLGA5
INSM1
ADK
AP3M1
PMAIP1
MALRD1
PDAP1
BUD31
USP1
RPS23
ATP6AP1L
RABGGTB
PROSER1
NHLRC3
TM9SF1
ICE1
DDX39B
PTGES2
HOXA4
NEUROG1
SEC11C
BICRA
RPL7
RDH10
APOM
BAG6
PIN4
BNIP3
RPS29
LRR1
SUCLG1
STK36
RNF25
ST18
ARHGAP11A-SCG5
ARHGAP11A
COMMD1
CCT4
CDX1
TAF9
RAD17
AK6
OAZ3
SLC10A2
NDUFA10
CLDN2
HES5
PRUNE2
CPSF4L
UBE2I
C16orf91
TPRA1
RPN1
GADD45GIP1
GORAB
ZNF383
MUSTN1
RBBP7
TBC1D8
SPACA1
PDE12
SKIL
RAI14
MRTO4
EMC1
DSCAML1
TIGD1
EIF4E2
HOXD3
PDHB
HOXA3
HOXA2
ALKBH5
CNPY2
GTF3A
PAH
ASCL1
PCBD2
ZNF746
KIF26A
PDHX
APIP
EIF2S3
CBX3
RBPJ
STOML2
HOXB4
ZGPAT
ARFRP1
SYBU
PDPN
ANK2
METTL11B
KLF17
GFER
GTF3C4
DDX31
AXDND1
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
GFRA3
TLE4
BFSP1
CLGN
CAMTA1
MRPL38
POLR3A
VOPP1
REC8
OTX1
HSPA1B
ID1
HOXC5
DHX32
TMPPE
GLB1
ADM
RARB
P2RX6
MEIS3
SLC35E3
STK38
DDX3X
LIN28B
SOX6
PAX3
LRIG3
CPLX1
CPN2
WDR74
CSTF2T
TCF4
QPRT
EIF4E3
ZFHX4
PANK2
H3C12
RARA
RGS12
BNIP2
BRWD1
PLEKHA5
PNKD
PRDM12
TTI2
CIAO2A
NEDD9
NELFA
MTRNR2L2
MTRNR2L8
SPATC1L
CDC73
FLOT1
NDUFS7
SH2B1
CCDC200
SP2
DHRS3
BBS9
KAT6B
GPR108
NEURL2
CTSA
GLT8D1
ANKLE2
DNM2
ID2
TEPSIN
NDUFAF8
P4HB
MINDY2
RPS10-NUDT3
RPS10
TBX2
ZFHX3
DOLPP1
STX18
RAB5B
KANSL3
DONSON
UPF3A
NPAS4
ATF6
SP5
CBFA2T2
OTUD7B
KATNB1
FRA10AC1
CCDC174
PGK1
DPP9
SMARCD2
GATA4
MTMR4
DUSP6
HUS1
FOXP1
ZNF687
XKR7
TBX3
ARRDC4
ARSG
NRL
KIF21B
SRSF11
MRPS31
ALKBH7
CNOT2
RFX1
LRRC40
POLDIP3
NFKBIA
STIP1
NR2F1
OSBP
TLE2
SPCS1
RMND5A
DCAF11
ZNF608
PDE4D
PPCDC
RARG
PCNA
IQSEC3
SOD2
ATP5F1B
GPCPD1
RNF207
MRPL34
SLC45A4
MDM2
KMT5A
LPCAT3
RUNX1T1
PPP6R3
SMIM20
SP1
CS
ANKHD1-EIF4EBP3
ANKHD1
EIF2AK3
HEXIM2
SNX16
KAZALD1
MACROH2A1
GRSF1
CRLS1
TLE6
KNL1
HNRNPD
KCNAB2
POLG
TMEM70
MLEC
TNFRSF19
SHF
SACM1L
MYRIP
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
MTF2
PKN2
CCDC43
SMG6
PRMT5
KDM3A
DAGLB
EIF3D
NLK
FBXO31
ANKRD28
SLC30A4
COX5A
ZNF503
SERPINE1
RAB37
RTN4
HNMT
SREBF1
EIF4H
NKD1
HMGB1
ARHGEF10L
ILF2
GATD3B
GATD3A
CEP41
RHBDD1
CDS2
PRKACA
TDRKH
DIABLO
CBX5
TMEM101
KIAA0319
EVI5L
NCOA2
ARID4A
TXNDC11
LUC7L2
TOP2A
SEC14L1
G3BP1
HTR5A
MBD2
ZNF76
WTAP
KMT2A
PRDM10
ARHGAP4
TRIB1
AIFM2
TCTEX1D4
BTBD19
USP42
DUSP9
NRSN2
IQGAP2
RNF149
NR2C1
GOT1
RASSF2
USPL1
SH3BP2
TMEM60
PHTF2
INAFM2
ING1
PIKFYVE
HES3
HMGCS1
IRF9
CCDC88A
TUBGCP3
ACYP1
B4GAT1
ROGDI
FAM107B
CHD8
EIF1B
NHLRC1
HNRNPA2B1
CMSS1
SCAP
BHLHE40
EXOSC4
EPM2A
YTHDF2
ANKS4B
STX16
LCK
TSPAN4
GFOD1
TCHP
MFSD11
POLR3E
PARK7
NANP
HPCAL1
NEO1
HSP90B1
CYB5R4
PCGF1
PCTP
ICAM1
FAAP24
CEP89
ANP32E
MPND
LTBR
ZC2HC1C
SEPTIN9
DLC1
TUBB4B
UBE2C
SRCAP
LOC730183
MVD
POLR2J3
SLC25A19
GBA
MEPCE
CLCN3
GPATCH8
HNRNPC
TRAF4
ATP23
TBL1X
MPV17L2
CELSR3
ADAP1
TANK
CASC3
CALM2
LBX2
ARHGAP24
CCDC107
HSPE1-MOB4
HSPE1
HSPD1
CDC42EP3
PRR14
CLK1
H4C12
GLRX5
TMEM94
HNRNPUL1
IRS1
DUSP12
ARNTL
YARS1
S100PBP
SNX3
ZCWPW1
ZNF148
LRRC59
METTL25
CCDC59
LPIN1
ZCCHC3
STAT3
FMC1-LUC7L2
FMC1
DDX1
SHB
NCBP2AS2
NCBP2
ABHD2
NCOA7
HECTD4
TCERG1
DNAJB1
SLC9A1
ZBTB18
CSRNP1
KPNB1
CYCS
C8orf37
MTRF1L
JUP
STARD4
FILIP1L
BAZ1B
KIAA0319L
NRSN1
LIN28A
HIBADH
ARIH2
CMTR1
ZNF740
CSAD
TOMM40
FAM227B
DTWD1
SERPINB9
MSMO1
ACVR1
GGT1
FAM72D
RSRC1
NBPF1
CCNL1
WBP1L
PEX14
NKIRAS1
NUF2
RAB11A
SLX1B
SLX1A
BOLA2B
ELOVL6
LRCH4
FBXO24
MBD6
FBXO41
TRIP4
LAPTM5
PXMP4
ETV4
LNPEP
NAT8
MFSD6
ARID5A
PSMD3
SRSF2
NFE2
DCP1A
KAT7
MTRNR2L9
HEBP2
ACTL6A
CEBPE
ELF1
CCPG1
C15orf65
ZNF219
MYADM
HBP1
FASTKD1
USP3
PSMD9
HPD
DYNLT1
MRPL4
SKA2
PRR11
ATXN1L
RASSF5
LONRF3
HOXC6
CPVL
CALR
MAF1
TMEM9
HMGN4
EEF1AKNMT
SLC7A5
ARHGEF1
CDCA7L
MANF
HSPA5
SKIV2L
NELFE
BOLA2
RPS6KA1
KHSRP
CLTC
OTUD4
PKDCC
HINT2
GSTA4
AP3M2
PARP2
MEF2C
IL6ST
C3
TBRG4
TLN1
CREB3
SNRPF
ARMC1
L1CAM
CIC
PLEKHA6
HNRNPL
GLRA1
LOC100289561
HOXC4
TRIM44
RAD50
LDLR
C16orf54
PGP
KEAP1
SLCO4C1
TRIM41
ADAM17
TXNRD1
CABIN1
TOP2B
CPLX2
CNPY3
PEX3
ADAT2
BHLHA15
CHN2
POR
OPA1
TMEM86A
NR1D2
UBAP2
MFN2
STT3A
IARS1
AOPEP
RFESD
MAP11
USP15
FAM72C
ADRM1
TIGD2
YIF1A
H6PD
PSMF1
SPSB3
NUBP2
H4C8
PTGES3
BIN2
DIAPH1
SPIN1
RPS24
RBM15
BRD2
CBWD5
ADGRG3
CYBA
IQCH
AAGAB
TMEM259
SLC24A1
BAIAP2
GTF2H2
AKIRIN1
PARL
SPECC1
KDM1A
NBN
KMT5C
CYP1A1
C11orf24
WBP4
RNASEH1
RPS6KB2
NBEAL2
NADK
H4C14
DIAPH3
KAT6A
DYNLL1
C1RL
NCDN
BOLA2-SMG1P6
IBTK
MAPKAPK3
CISH
GBE1
MAP3K3
ZBTB45
FGR
TMBIM6
MED9
H2AZ2
DENND4B
SEMA5B
SIRT4
SERTAD2
SPAG7
FAM162A
CCDC58
ZNF292
TMEM222
VIRMA
PXYLP1
CNOT1
E2F3
TMCO6
GRHL3
MTHFD1L
MFSD8
ABHD18
CDKN2D
CEP70
FAM72A
SH3TC1
TLE3
CBWD3
HESX1
NIBAN2
MAN2C1
SLC11A2
ACAT2
PKM
ZNF77
SEPTIN2
PWWP2A
HDLBP
LEKR1
WNT10B
PIWIL2
WDR25
WARS1
MAD2L1BP
ZFYVE21
XRCC3
DGKZ
CD38
PIK3AP1
AKAP1
SLC35E2A
CLIC4
GATAD2A
DRAP1
C11orf68
PLIN2
PTP4A2
DZIP3
CIP2A
MTHFR
AGT
TMX2
PEX2
MED19
EIF4A3
GRWD1
LFNG
C12orf65
SRPRA
TRIAP1
PMPCB
BCAR3
MED23
IDH1
NFE2L1
FGFRL1
TMEM217
TBC1D22B
RNF139
THUMPD3
PACSIN2
PDK2
MTMR12
MTERF4
H2AX
H4C3
MSANTD4
AK2
ZDHHC4
HNRNPA1
RNF34
MAPKBP1
TOB2
RPS8
MRPS23
NFE2L2
TBCCD1
IFRD2
ZC3H6
MAEA
STMN3
C6orf89
SERPINB6
SLC33A1
AURKAIP1
UBL7
KATNA1
VANGL2
MLLT11
FAM110A
CDC42SE1
TOM1L2
MIA2
DRC3
DUS1L
CLK2
PPP1R13B
CX3CL1
FGA
SDE2
SPATA1
GTF2H2C_2
GTF2H2C
TRAF2
ZNF341
ARFGAP2
RECQL
GOLT1B
C6orf136
PCK1
ASB1
TEDC1
STK11
HAL
NOTCH2
SLC51B
TRABD
TOP1MT
SLC25A45
SLC39A13
CIPC
UGP2
IL27
LEMD2
DENND2D
MCU
BZW2
LRRC45
CENPX
CTNNB1
PPIB
MGST2
H4C15
ACACA
RBM25
NREP
PLEKHA7
RXRA
PA2G4
TRMT6
MRPS15
MCM8
MVK
HERC5
PSMB3
R3HCC1
RCL1
MAPRE2
BDH1
FDFT1
NME1
FNTA
TLX2
TIMM44
HECTD3
PHF8
PLCB2
ATF3
ZBTB20
UPP1
SNRPD2
QPCTL
KBTBD2
DDIT4
GDPGP1
CIB1
IST1
RCOR3
RASGRP2
CDC25C
SAXO2
EFL1
LRRC37A3
ABCA12
ZNF414
SRP9
FDPS
GMEB2
DROSHA
C5orf22
COQ10A
MYT1L
HHAT
FAM120B
TMEM248
METTL26
RBM27
ANAPC5
RPLP0
NMNAT1
LZIC
SHFL
MAP2K1
CENPA
COQ8A
BOD1L1
DUSP4
ZBTB17
MC1R
SIPA1
PRDM1
LIX1
IFNGR1
SRRM3
TRDMT1
JAK3
DMD
NUDT15
TCF19
PIP4P2
CCHCR1
ATXN2
BRAP
ACAD10
SECISBP2L
ATP5PD
SHC1
FOXJ3
CKS1B
BUD13
HNRNPF
GABRB2
PPP2R5A
SF3A3
DNAJB2
BOLA3
ASNS
USP32
SEC31A
CLCN6
ZNF143
VAV1
TAGLN2
ZNF212