ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9607665 | NTERA-2
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◣ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZGPAT
ARFRP1
KIF21B
SKIL
GJB6
MINDY2
METTL11B
MDM2
SH2B1
KCNF1
GLI1
CYP1A1
OTP
CPLX1
SERPINB9
WFIKKN1
HECTD4
TAGLN2
FBXO41
USP3
PCTP
RPS8
PDE12
NEURL2
CTSA
C16orf70
KCNQ4
SPACA6
CLDN2
ATP6V0A4
LZTFL1
TLX2
GATD3B
GATD3A
MAP11
KMT5C
TPRA1
PANK2
PLEKHA6
BRI3
BIRC7
KCNJ4
ADGRA2
TCTEX1D4
BTBD19
MACROH2A2
RBKS
BABAM2
DUSP4
MEGF9
ZNF746
CHCHD10
SERPINB6
TRAPPC3
MAP7D1
TNC
PRELID3B
UTS2R
MTF2
ZFHX3
SRCAP
LOC730183
MDK
PRSS47
LOXL1
APOBEC3G
CCDC120
RARA
WDR81
SOX5
DIPK1B
HUS1
NDUFS7
TLE6
WBP1L
APOBEC3D
TSPAN18
CFAP20DC
NRSN2
NBPF15
CDC25B
OTUD7B
SNX16
CASD1
HIGD1A
SOCS2
GUCA2A
NR2C2
ADM
ATP6V0C
NR2E1
LHCGR
ACYP1
ZC2HC1C
CNR1
RUNX1T1
BFSP1
SERPING1
DONSON
ENO2
SH3D21
COX5A
NR2C1
LFNG
RMND5A
AP5B1
FOXJ3
DUS1L
SLC4A2
CDK5
ATP5MC3
DEPP1
SLC11A2
NAP1L4
GALP
SNX12
MRM1
CYBA
DUSP23
DHX32
CRIP2
UPF3A
PCNA
CDS2
FAM72D
PTGES3
AKIRIN1
IL17RD
GBA
PALM2AKAP2
NUF2
SH3BP4
PTP4A2
AP1B1
EEA1
CNOT2
GABRB2
GPR162
KAT6B
BOLA3
LIN28A
CDCA7L
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
TCF7
HTR6
MTRNR2L2
WDR74
TECPR1
KAT6A
CORO6
STX18
UHRF1BP1L
DENND5B
TRABD
NPAS2
SERTAD2
ADGRA1
YIF1B
RNF208
C15orf39
NIPSNAP2
CXCL12
CCDC92
NAALAD2
MTRNR2L8
SCAP
ACY1
GPRC5A
MSI1
USP30
FNDC5
FOXP1
GPCPD1
CTSZ
FAM20C
ZNF202
DSTYK
ZNF385A
ZBTB17
ACHE
LMF1
SOX8
TOP2B
RGPD2
RGPD1
TTYH3
CFAP74
DNAJB5
FXYD3
KANSL3
TBC1D9
HHIPL1
CCDC85C
LRMDA
RHOC
DHRS3
LPCAT3
LRP4
PPP1R13B
RBBP5
SLC30A4
MBD6
CTNNB1
SIPA1
MCPH1
INTS10
IKZF4
PLPP2
ANHX
ARHGEF16
SH3BP1
LPIN1
SF3A3
MAPK12
ARID5A
SPSB3
NUBP2
S100A16
DYRK1B
EPM2A
TMEM132B
CACNA1H
TATDN3
NSL1
KMT5A
DUSP9
PLIN2
ANP32A
PHLDB1
DCP1A
RASSF7
LMNTD2
HMX3
EFCAB14
TSPAN14
HES5
ZNF639
GALNT9
SIAH1
MACROH2A1
NOTCH2
MPP2
COLGALT1
ZNF792
PPP1R16B
GALR2
EXTL1
MBD2
ETV4
SNRK
DCAF10
STRN
DRG2
C22orf39
RAD54L2
AGAP2
SKIDA1
ZNF615
SPIRE2
NEK2
ADAMTS2
GAS2L1
RBM15
PPM1H
M6PR
KLRG1
ADAMTSL4
PDE2A
CLEC4C
COQ10A
DUSP10
SUN2
RPRM
SLC26A11
ZNF44
PMAIP1
WDHD1
SOCS4
SLC2A14
STK11
LMNA
MEX3A
TRNP1
SZT2
MED8
ABHD12
MLF2
STRA6
BACE2
LDLRAP1
FXR1
CPA1
CCDC50
MFSD8
ABHD18
PCCA
CYB5R2
GLI3
SERPINE1
VANGL2
UNC5D
GPR108
SPIN1
DENND4B
MRPL39
ISCA1
VOPP1
TLE3
TBC1D22A
FAM210B
DNAJB1
MYBL1
RARB
HINT2
IDH1
FAM120B
RRP1
TRPM1
NMRK2
C1R
FAM207A
GADD45G
PSMF1
LHX2
DDX3X
AURKAIP1
TARS2
PHB2
PTK7
DUSP12
PKM
CTSC
TBC1D19
TRIP4
NINJ2
NFAT5
DSC2
CMSS1
FILIP1L
XPR1
SEPTIN6
FUT10
TBC1D8B
CHD4
SMIM5
SREBF1
MAN2C1
MED23
KIF26A
CDX1
MAP2K7
GSN
DMPK
KIAA1522
TRAK1
TRIAP1
CHCHD1
NFAM1
KIF13B
TRMT2A
RANBP1
SHH
FABP3
OTOP1
TUBB2B
HOXA4
TEX264
MELTF
REST
MED9
HPN
VCAN
CLUAP1
PDE8A
CACNG4
BHLHA15
GTF3C3
CEND1
PEX5
STOML2
RIF1
IBTK
EIF2D
AOPEP
TTC4
SLC39A14
DUSP16
YTHDF2
AMOTL2
KMT2D
FIGNL1
STRAP
CBX3
HNRNPA2B1
SLC51B
TMC5
CLK1
SNAPC5
SMPD1
FBXO32
FASTKD1
ZNF3
AJUBA
IL11RA
APOC4
SULT1A1
ANKRD28
CRIP1
FRA10AC1
SNRPA
C19orf54
TPM3
SLC39A7
RXRB
SNAP47
JMJD4
BICD1
FAM110D
AIF1L
VARS1
CCDC88A
MYADM
ZSWIM4
LZTS2
ALDH7A1
SEMA6D
BRICD5
GPRIN2
PARL
TMEM242
TYROBP
STMN1
CPSF4L
BRWD1
TAF6L
CCDC28B
NCOA2
SLC39A3
DUS2
DDX28
PNKD
ROCK2
CA14
TRIM54
RBPJ
QPRT
MRPS15
RCOR3
SLC25A36
GPATCH8
AK2
CCAR2
MAD2L2
TRAPPC10
C2orf73
CYP11A1
RFX1
REPIN1
NFILZ
HSF4
TSGA10IP
IST1
BIRC6
ECSIT
PELATON
VAMP2
P2RX6
LINS1
ASB7
CLDN7
ZNF677
ZNF346
ADIPOR2
SNRPN
SNUPN
DMAP1
ACTR6
RNF220
PRDM14
PEX3
ADAT2
PACSIN2
PICALM
LAMC1
PLAAT3
METTL25
CCDC59
TMEM222
ZNF341
CTDSP2
U2SURP
MSX1
DOK7
CLIC5
DSCAML1
FAM72A
RHOT2
USP24
KCTD3
RBP1
SORBS3
MAGEB3
RSBN1L
MCRIP2
PACS2
TBL3
RBM15B
MUSTN1
TUT4
HMGB1
USPL1
BARHL1
CIAO3
DEDD
ZNF512B
CHKB
IQUB
NEFH
BCL2L2-PABPN1
BCL2L2
TRIP12
FBXO36
GADD45B
TMEM11
SEZ6
DBF4B
NPM2
SPEG
PHACTR1
SLC24A1
MEGF8
TNFRSF12A
NCAM1
ZNF141
KCNB1
PCBP3
TXNDC11
AIFM2
WDR36
PLOD2
MKNK1
SULF2
U2AF1L5
U2AF1
OBI1
NBPF12
NKAIN4
HORMAD2
FLOT1
MRPL34
SLC44A1
ABHD8
MIEF1
PDCD4
GFER
PGLS
SSBP2
USP9X
CACNA1G
SYDE2
MOCS1
ZBTB7B
ZNF76
EMC8
COX4I1
SSNA1
ANAPC2
THEM4
ZSCAN20
IQCE
NACC1
TRIM26
GFI1B
LRRC36
KCTD19
NANOG
LGR6
MAGOH
CAPS2
HP1BP3
LPAR1
CEP70
C12orf73
DLX4
VAMP4
PFN1
PRICKLE1
ZFYVE21
XRCC3
RBM7
C11orf71
ANGEL1
KIAA1958
C9orf147
TP53I3
GULP1
XKR8
L3MBTL4
COMMD2
PIPOX
PDE4C
FGFR2
SMARCD2
NDRG2
ACSL3
WDTC1
SPSB2
SYP
PRR7
STEAP3
C1QTNF5
ELOVL6
ZNF212
UCHL5
RO60
SP7
ATR
LARP1B
NFIA
CRABP2
GTPBP3
ANO8
MTCL1
ZNF414
ARID1A
RNF19A
ANP32B
ZNF256
CACNA2D4
MRPL4
GARS1
ZFP36L1
SLC4A8
NF1
MAPKAPK5
CCDC174
SOWAHD
LPCAT4
ZBTB37
GPSM1
USP44
TIMP4
MTRF1L
E2F3
SPATA1
GNG5
EBAG9
HSP90AB1
PHTF1
LRP6
SYT2
CREG2
GFPT2
CEP41
PLEKHA5
CSTB
FUNDC1
COPS7A
GFRA1
ATP10D
FOXH1
HNRNPD
PIK3AP1
PEX2
SEC23A
ZNF721
PIGG
ZNF747
BCL9L
ZFYVE9
VXN
ITPRIP
GEMIN7
BRF2
MAP1B
TIGD1
EIF4E2
SERTAD3
CAPRIN2
ELF2
AGK
ZFP64
ARHGEF3
CREB5
BCAS4
BCAP29
IL11
CDC42EP3
FNTA
NSFL1C
ACAD9
SLC35E1
BCAR1
STARD4
DENND6A
SIK3
BCAT2
B3GLCT
HMCN2
NUDT15
DRG1
DCP1B
CHCHD3
SCNN1G
SHB
L1CAM
ESRRG
UNKL
OXA1L
PLBD1
CALM1
LIN28B
LIMK1
NDUFA10
SRXN1
SLC19A1
INO80B
THPO
DYRK4
AZIN1
NAMPT
WDR31
ZBTB38
NDUFAF3
DALRD3
JAK1
IER5L
C16orf86
SLC25A19
MRPL44
PSMB2
HASPIN
SOD2
WTAP
FEZ2
PDE4DIP
DISC1
DNAJA2
SPAG16
FZD1
ART5
ZNF469
ZBTB20
RFC5
CTDP1
ZC3H15
THBS3
MTX1
KEAP1
PHACTR4
MVD
FGD4
RAD52
KIF21A
RIPK1
TP53INP2
MAPT
ISLR2
GRIN2A
YAF2
MECOM
PHF19
BAZ2B
LTBP1
JAG1
TRMT61B
DGLUCY
MEIG1
ELMO1
S100A2
TMTC3
CEP290
NEUROG1
SRSF11
LRRC40
HSPE1-MOB4
HSPE1
HSPD1
SAMM50
CHD1L
PRKAB2
ABCA3
MYO3A
TM2D3
UBC
NCKAP1
HESX1
WDFY2
APPL1
MED26
JMJD1C
LSM8
NCAM2
ADA
BRD2
USP14
CAPN2
COX20
ADAM17
METTL9
INTS7
DTL
COG7
FAM3B
IRF9
ARID2
FLYWCH2
VENTX
MRPS31
HPS3
NUTF2
CENPT
E2F7
NEMP2
KCNH1
CZIB
CDKN2D
UCP2
DNAH14
PPP6R3
CLCN3
KANK2
PATJ
MANSC1
TMCC2
TJP3
GSTO1
CLTA
PDS5A
ZNF335
RABL2B
RABL2A
RWDD1
PSMD1
NME6
NUP85
CACTIN
SUDS3
POLR3F
DZANK1
EFTUD2
CCDC103
NVL
IPO13
VDAC2
DYNC1LI2
GOSR2
HSPA9
VTI1B
PSMG2
CEP76
NUP205
MRPS7
GGA3
POLR2E
HADHB
HADHA
RPL21
NCLN
EXOSC5
BCKDHA
C19orf48
TBCK
AIMP1
BLCAP
DCTN1
REXO1
TSNAX
SLC35B1
ATP5MG
STAM
TSN
STAM2
SEC61B
FARSB
PSMD12
LYRM4
FARS2
SRD5A1
NSUN2
PNO1
PAK1IP1
C6orf52
PES1
UPF2
SKP1
IRGQ
NDUFA4
ZNF576
COX7A2L
CAPRIN1
ISCU
ACTR10
ZRANB2
TTC8
SUPV3L1
DPH6
IQCG
SART3
GOLGA5
PI4KB
TMED1
RPL35A
RPS23
ATP6AP1L
RPS12
SMC2
MRPS5
ANAPC7
C17orf80
RABGGTB
SELENOF
HS2ST1
FAM104A
USP1
MRPL11
PDAP1
BUD31
PCBP1
EIF4ENIF1
UFM1
ADK
XPNPEP3
ST13
RPS27A
CLHC1
AP3M1
ICE1
APOM
PROSER1
NHLRC3
BAG6
COMMD1
CCT4
SF3B3
COG4
OSGEP
APEX1
RPS29
PAF1
MED29
TM9SF1
NEUROG2
DDX39B
LRR1
NEUROG3
PIN4
OAZ3
SUCLG1
PTGES2
UBE2I
HES1
ARHGAP11A-SCG5
ARHGAP11A
TAF9
RAD17
AK6
STK36
RNF25
MRTO4
EMC1
SPATC1L
VEZT
FGD6
RPL7
RDH10
SEC11C
EIF2S3
GADD45GIP1
BICRA
CDC73
C16orf91
RPN1
GORAB
GTF3C4
DDX31
ATOH1
CNPY2
CCDC200
SP2
BNIP3
ZNF383
BBS9
IGFBP2
MRPL38
GLT8D1
PDHX
APIP
TTI2
PCBD2
HOXA2
ANKLE2
DNM2
NBAS
ID2
TEPSIN
NDUFAF8
P4HB