ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX8814876 | Neuroblastoma
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◣ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ATF6
TBX2
HNMT
HHAT
TBX3
MTRNR2L2
SEMA5B
CBFA2T2
RWDD1
ABCA12
MARCOL
MYRFL
TNFRSF19
KIAA0319
QPRT
MYT1L
MFSD6
RARB
MTRNR2L8
HAO1
DIABLO
PTPRB
DCTD
ADGRL2
TES
ANO3
DEFB130B
DEFB130A
ZNF335
PDE4B
MME
PKDCC
GRWD1
WDR74
DMD
GFRA3
NRSN1
IQCG
RPL35A
ZNF148
C1orf185
FRA10AC1
FREM1
GSC
RPS29
SULT1C4
KAZN
POLR2E
GOSR2
KCNIP1
TYRP1
RABL2B
NCAM2
EFTUD2
CCDC103
EXOSC5
BCKDHA
CDH12
MTRNR2L9
CLGN
CLK2
KCNK2
SOX5
RP1L1
ATP23
RABGGTB
CHRDL2
ITGAV
SNCAIP
PES1
TMED1
ACACB
HADHB
HADHA
ZFHX3
LMO7
CNTN5
SYT16
TMEM17
SUDS3
RFPL1
ZFHX4
MRTFA
ELAVL4
RABL2A
SRGAP2C
SRGAP2B
SH2D4B
KMT5A
CALHM5
LRRC43
GABRG2
COX7A2L
ARHGEF10L
RPS12
ZNF608
PIK3C2G
PCGF1
AGR3
RIMS1
DLC1
UFM1
OAZ3
FYN
PSMD9
HPD
NUP85
ESRRG
MRPS7
GGA3
SMC3
NALCN
DENR
IL17F
CDK4
CHRNA9
RPS23
ATP6AP1L
SBNO1
MYT1
ISCU
SART3
NBN
CACTIN
MAPK10
NUP205
SEC61B
SYTL3
SUCLG1
NOMO1
PSMD1
BLCAP
RPL21
ADK
AP3M1
C17orf80
FAM104A
CSRNP3
UPF2
PI4KB
HOXA3
RBBP5
GGT1
TNFSF13B
STK36
RNF25
BBS9
PNO1
SRPK2
ZRANB2
DCTN1
UBA3
SLC35B1
GPBAR1
FARSB
DNAH8
SCRG1
TTC8
PYROXD2
OGFOD2
ANTXR2
MEGF6
DDR2
LRRC8B
CNTNAP4
LIX1
MGP
KCTD3
SF3B3
COG4
TCF4
SUPV3L1
NVL
HTR3B
HOXC6
HOXC4
CCT2
FNIP2
KNTC1
PSMD12
MARCKS
TSNAX
REXO1
GOLGA5
RARA
AOPEP
KLKB1
TMC3
RNF111
MEIS2
ANAPC7
LUM
DUSP6
TTI2
PHOX2B
SORBS2
CD9
NOX5
PCDH15
BDNF
ACTA2
LYRM4
FARS2
PTPRR
ANKS1B
MRPL11
GTDC1
CDC42EP3
SSUH2
EIF3D
SLC17A2
GRAMD4
FIGN
TSFM
MFAP4
DYNC1LI2
REC8
TBR1
VPS33A
SLC8A1
STAM
RUNX1T1
C19orf48
APOM
BAG6
SULT6B1
CD302
BAZ2A
CDK2AP1
SLC16A7
HEXIM2
PLEKHA6
SLC35E3
KCNJ16
MLLT11
CDC42SE1
HEXB
DAB2IP
CCKAR
VDAC2
PLSCR5
SELENOF
HS2ST1
CECR2
LRGUK
PAM
SERTAD4
MDM2
ESRRB
TBL1X
NUP107
FNDC5
ALK
SRD5A1
NSUN2
ASIP
SLC26A7
PDAP1
BUD31
CAPRIN1
SCHIP1
CCDC177
HSPA9
CPSF6
LINGO2
ID1
MPP4
POLR3A
USO1
IRGQ
ZNF576
CCDC183
SLA
KIF1A
CCDC174
NEO1
FHL2
OSGEP
APEX1
HOXC5
SCRT2
SLC25A12
PLAC1
NRXN3
LINC01638
FGL1
HAND2
PDE1A
STAM2
HYKK
IPO13
LSMEM1
DZIP3
CIP2A
VANGL2
CCSER1
TXNRD1
TSPAN31
MCU
CASP7
TNFAIP2
TM4SF1
ZCCHC8
PRL
FRS2
ANK3
TRIM24
SNX6
NUDT7
TRAF3IP3
BCO2
SETD1B
ACTR10
TTC13
SLC37A3
ACVR1
C12orf65
HECW2
SMC2
CYTH1
SLC25A44
AHNAK
ARHGAP11A-SCG5
ARHGAP11A
KIF6
NKX6-1
RPS27A
CLHC1
ADGRD1
ETV1
ERMP1
TM2D1
CABLES1
POLR3F
DZANK1
SPATS1
JAKMIP2
PAK1IP1
C6orf52
BEND7
NCLN
MRPS5
PDE12
ANKDD1B
OSBPL7
MAP3K3
CTDSP2
CHODL
MGAT4C
DDX39B
TOM1L1
HOXD8
NOMO3
SNX16
RGPD2
RGPD1
SATB1
SAMD13
SKP1
IL19
PPP1R3D
FAM217B
SYBU
SPAG9
CEP41
GBA
TP73
BHLHE22
KIAA1217
ZNF235
FGF7
ZNF503
CCDC200
AXDND1
MAP4
ANAPC5
COMMD1
CCT4
ANKRD44
LIMCH1
OXR1
BEST1
TSN
CHD8
JMJD1C
MAPKAPK5
USP1
CNOT2
PIN4
POPDC2
SYT4
PKN2
RBKS
BABAM2
PTPRG
NFE2L2
TBC1D9
CHN1
RNF34
P2RX6
LMO1
PJVK
TNFSF18
SYNPR
ELMO1
PPFIA2
FOXP1
SLITRK6
PALLD
SMIM20
MRPL24
RPS24
GFRA1
CNOT10
MTHFS
ACSS1
MRPL38
ALG5
METTL1
EEF1AKMT3
ILF2
TXNDC11
KLHL24
COL5A2
ATP5MG
ZNF383
CIC
OAS1
CAMTA1
OGG1
NFAM1
ITIH5
NDUFA4
TLE2
ID3
ANTKMT
BICRA
PHOX2A
ZBTB20
IRX4
SVOPL
AGTR1
NPY2R
NPPA
MEIS3
NEUROG1
KIDINS220
TCF12
RAPGEF2
UTP23
TNS1
MTUS1
FTCDNL1
MRPS23
SLC26A11
PTPRO
SDE2
TAMALIN
VTI1B
CD200R1
TM9SF1
HMGA1
MED16
BRD4
NDUFS7
MTMR14
EYS
LZTS2
LRIT2
PDGFRA
EGFR
POU2F1
PLCH1
CRYBB1
ETV4
SNAI2
COLEC11
DEFB136
TMEM51
MCC
CFAP251
MINDY2
ORAI1
RUFY3
NME6
GADD45GIP1
IRF9
CEP70
XPO1
GUCA1C
TLR7
CDH23
POSTN
ALKBH5
PBX2
RHOF
TRAF3IP2
ATG4C
COMMD2
GSE1
TM4SF4
GORAB
GTF3C4
DDX31
NME1
CHD3
CLASP2
MBNL2
CNPY2
NBAS
CCDC33
ADAMTSL1
XPNPEP3
ST13
PUM2
LAMP5
DPH6
PCBP1
LOC645177
C12orf77
PDE4D
ABAT
C1orf158
NDUFA10
RPS10-NUDT3
RPS10
ATXN7L3B
IL9
HIP1R
SHC4
EEF1G
ARL14EP
IRF2BPL
RPS27
HSD17B11
IRS2
SHD
PTGES2
LIN54
STRA6
GRAP2
SUOX
BRPF1
SYNE3
AVIL
NXPE3
PRCC
CDC73
MFN2
H4C14
ZBTB18
TLE1
EIF4ENIF1
SH2B1
TTLL6
PRR13
ZNF510
GALNT14
PHC2
RIMBP2
DENND2B
ARL2BP
ACOT11
DGKH
CLDN22
EYA1
UTRN
PROSER1
NHLRC3
TNFAIP1
IFT20
DNAJB4
WFIKKN2
CDKN2D
ATF3
RSPH4A
BTRC
ATCAY
MRTO4
EMC1
PRDM10
ELF1
WBP4
UNC80
NET1
VPS33B
CLIP1
HDAC9
ABCB9
EDNRB
PLD5
ICE1
EEF1AKNMT
SIAH3
EIF3C
EIF3CL
CPA2
CCDC141
TBCK
AIMP1
THAP12
GVQW3
B3GNT4
PLA2G12B
TLX2
STMND1
WDR25
WARS1
REEP6
PCSK4
NR2F1
SEC14L1
SMARCD2
CS
CLVS1
ELAVL2
OTUD7B
SSBP2
BSG
OTUD4
PCNX4
OIP5
NUSAP1
TMED7-TICAM2
TMED7
UBE4B
NPR1
RABGAP1L
TMED4
ARHGAP25
PHGDH
STON2
RGMA
TMEM245
SLC24A2
TAF9
RAD17
AK6
RSRC1
ZNF292
MYO16
ZNF687
SNX17
EIF2B4
KCNMB4
ID2
HSPA1B
EIF4H
USP32
NOMO2
NT5C3A
MEIS1
DDX52
SCN2A
CPB1
GSTO1
GINS4
RPL7
RDH10
SH3D19
RAD52
LMO3
RFESD
YPEL5
SIX2
FRZB
RRAS
EXTL2
LRRTM4
GRIK3
DACH1
POLDIP3
CHST11
ARL17B
ARL17A
ASNSD1
ASDURF
TBL1XR1
CUL1
FAM110B
RAB6D
HIBADH
PSMD3
SF3A3
ALG10B
DRGX
AMMECR1
HIF1AN
FBXO46
PRKCSH
CCDC151
MID1
ADAMTSL2
MC4R
ITPR1
MLXIP
TMX4
VPS26C
PDGFB
CCNT1
CDK12
BRD7
HEBP2
ANXA11
VPS25
PAF1
MED29
DHRS3
PLEKHG2
GPR89A
RNF7
NGDN
SNRPE
ST7
WASF1
FBXO38
TMUB2
KERA
GLI2
TLE4
NRSN2
RPL27
PMF1-BGLAP
PMF1
RPUSD2
SPARCL1
DUSP12
TMEM259
METTL26
ATP5MC3
PLPP5
SCAMP3
NDUFA5
DPP9
POLR2J3
SKIDA1
HINT3
PCLO
ZFYVE21
XRCC3
FADS2
RASGRP3
UNCX
REP15
MUC4
CBX3
HNRNPA2B1
TMEM65
EEPD1
NAP1L1
TRIOBP
SHISA3
PA2G4
UPP1
HLCS
MAPK14
NUF2
H4C15
HSPA6
KHDC4
ZFAT
FAM86B2
POLR1F
DLG2
AMBRA1
TRPM4
SOX4
TMEM126B
TDO2
LDHA
ECH1
SPAG16
YEATS4
PSMB4
ZFC3H1
THAP2
SLC35E2A
RBM27
FLAD1
ZDHHC17
VPS37B
ARL6IP4
TBX18
UTP6
LRR1
HMGN3
HOXC10
METTL7A
BRINP3
RGS8
SYT2
CREB1
CHCHD5
UBE2T
TOMM34
XRCC2
SLC28A3
PARP2
LEMD2
COPZ1
STAT2
DGLUCY
KIFC1
RPS6KA5
LIPA
LMBRD1
PPP1R11
SESN3
CREB5
ASPM
YIPF2
TIMM29
KDELR2
PAX6
SALL1
ZNF76
DCLRE1B
AP4B1
SSBP1
FAM228B
RXFP4
SF3B6
TOMM40L
BCL9
DIRAS3
GATA4
SIRT4
PHLDA1
TTC21B
DHTKD1
USP53
ACP3
HOXD11
WBP1L
SLC25A45
ARHGEF12
TP53BP1
DNAJC1
RACGAP1
C9orf72
PCDHAC2
COMMD9
GPATCH4
MID1IP1
C12orf57
ARHGEF3
AP3D1
FGGY
FAM131A
TEK
FKBP14
CTR9
ATF7IP
TIMELESS
SALL4
IGSF10
MPV17L2
ZNF3
SSX2IP
TMEM41B
VTA1
NMBR
TP53I3
UBE2G1
KCNS3
KCNH7
TBC1D10B
MYLPF
N4BP2L2
MALRD1
KCNH2
THOC5
PPP1R15A
SCML4
MTOR
ZCCHC24
SMG5
PSMD11
RNF11
ETV3
MACIR
PEX11B
MAB21L2
TMEM120B
FAM184A
NHLH1
NEURL2
CTSA
TLE6
SPECC1
KMT5C
THUMPD3
FAM110A
UGP2
C3orf86
DDX46
MSTO1
CENPF
EGLN2
C11orf91
PAIP2B
UQCRQ
GDF9
OSBPL9
SLC19A1
PPME1
C2CD3
ZNF254
KIFBP
ZNF81
IL33
EN1
PRXL2B
MAPRE3
CCDC9B
MTMR4
NCOA7
TBRG4
DUSP10
SGTA
ASF1A
SOX11
TMEM205
CCDC159
AMPD3
ORC4
MBD5
BMS1
ZNF48
NAA35
RELN
CACNB2
CXXC4
FLVCR1
RBMS3
NOL11
H4C4
CREB3L2
JUND
PPIL3
NIF3L1
WNT5B
SELENOH
CLOCK
PIPOX
KBTBD6
NBEA
MAB21L1
IGF2BP3
PNN
EEF1A1
TUT7
ELL
GPR1
GULP1
SLIT3
SPATC1L
KDM3A
PGD
RBM28
SPAG4
AVPI1
FZR1
OLFML3
NEUROG2
PRMT5
SMARCC2
LIN28B
CEP85L
RPS26
TIPRL
ZNF768
MED1
B4GAT1
C12orf73
KATNBL1
FNBP4
CEP350
ADSS2
SLC9A1
FAM72D
DSCAML1
FAM72C
SLC24A1
PLTP
RFC5
CCM2
TAF13
DDX41
ILVBL
CRYGC
DCTPP1
ANAPC15
BLOC1S5
CFAP20
ADD3
ABCC10
MED18
PMM1
CNTN1