ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584309 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◣ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
RABL2B
RABL2A
PSMD1
NME6
MAPKAPK5
NUP85
RWDD1
CACTIN
VDAC2
IPO13
SUDS3
HSPA9
NVL
NEUROG2
POLR3F
DZANK1
BLCAP
DYNC1LI2
EFTUD2
CCDC103
PSMG2
CEP76
NUP205
HADHB
HADHA
VTI1B
RPL21
LYRM4
FARS2
STAM
POLR2E
C19orf48
GOSR2
ATP5MG
FARSB
CAPRIN1
ACTR10
NCLN
EXOSC5
BCKDHA
PES1
SRD5A1
NSUN2
SEC61B
TSNAX
TBCK
AIMP1
IRGQ
ZNF576
REXO1
MRPS7
GGA3
TSN
SKP1
UPF2
TTC8
DCTN1
STAM2
SLC35B1
RBBP5
PAK1IP1
C6orf52
IQCG
RPL35A
DPH6
SUPV3L1
PCBP1
PI4KB
PNO1
GOLGA5
COX7A2L
MRPL11
VARS1
ISCU
SART3
PDAP1
BUD31
UFM1
ZRANB2
RABGGTB
EIF4ENIF1
ANAPC7
ICE1
PROSER1
NHLRC3
PSMD12
ANK2
XPNPEP3
ST13
NDUFA4
RPS12
RPS23
ATP6AP1L
SELENOF
HS2ST1
C16orf91
SMC2
USP1
TMED1
OSGEP
APEX1
RBKS
BABAM2
HOXA4
ADK
AP3M1
TLE4
HES1
APOM
BAG6
RPS27A
CLHC1
IGFBP2
MRPS5
VEZT
FGD6
PIN4
SF3B3
COG4
PAF1
MED29
BFSP1
RGS12
C17orf80
FAM104A
NEUROG3
NBAS
ARHGAP11A-SCG5
ARHGAP11A
PRDM12
UBE2I
BNIP3
DDX39B
TAF9
RAD17
AK6
COMMD1
CCT4
NDUFA10
BICRA
ARHGAP24
ATOH1
MRTO4
EMC1
RPS29
LRR1
MALRD1
DSCAML1
SKIL
RPL7
RDH10
EIF2S3
TM9SF1
PRUNE2
SUCLG1
INSM1
HOXB4
SEC11C
CEP41
ID1
PDHB
PTGES2
HOXA3
OR8J1
TPRA1
RAI14
ATOH8
SLC7A5
SPACA1
GTF3C4
DDX31
RBBP7
PDHX
APIP
CLEC18C
ANKLE2
HES3
PMAIP1
GADD45GIP1
PDZRN3
OAZ3
KIF26A
METTL11B
TPO
NR2F1
LRIG3
ZFHX4
SPTBN1
FHL1
CCDC200
PKDCC
TRIM71
TLE2
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
ARHGEF28
TRAF3IP2
HOXD3
ZNF608
TMEM70
CAMTA1
NEUROG1
STK36
RNF25
CDC73
KIF21B
HES5
LPIN1
RPN1
DDX3X
PCBD2
CCDC198
GFRA3
ZFHX3
ZGPAT
ARFRP1
CLDN2
WRAP53
HOXA2
CNPY2
CLGN
MEF2C
GORAB
FABP5
KMT2A
CNN3
SOX6
CBX3
MEIS3
MUSTN1
ZNF746
TBC1D8
CETN1
PLEKHA5
SLC39A6
ELP2
REC8
ALKBH5
RARA
GADD45G
LMO1
LIN28B
PDE12
ADM
ZNF383
BBS9
NELFA
NCCRP1
CLEC18A
PDPN
PCDH18
LIN28A
ARHGEF1
DHX32
RAN
NCOA2
JAKMIP1
MTMR7
POLR1D
LNX2
GLT8D1
SPCS1
LIX1
RCOR1
SYDE2
SLC1A3
NEDD9
GTF3A
PAX3
FGFR4
IRS2
DLG2
HEY1
DGKZ
CCN2
PHOX2B
TBL1XR1
MRPL38
DUSP2
ZCCHC13
IPO11
PRM3
PEX2
SLC10A2
UGT1A4
WBP1L
PRSS47
PNKD
PTPRZ1
CHD8
KAT6B
CLEC18B
CS
ZBTB18
VANGL2
EFNB1
BMPR1B
BCO1
SH2B1
GFRA1
HES4
TCF4
AGPAT4
ABAT
SLC18A1
TAGLN3
BRWD1
RCOR3
DICER1
PFKM
FAM181A
POLR3A
TRDMT1
WDR74
MYRIP
VOPP1
CER1
CMTR1
TAS2R7
RAPGEF4
CNR1
CNOT2
MECOM
MTRNR2L2
MTRNR2L8
RARB
SPATC1L
FLOT1
NDUFS7
SP2
DHRS3
GPR108
NEURL2
CTSA
TTI2
DNM2
ID2
TEPSIN
NDUFAF8
P4HB
MINDY2
RPS10-NUDT3
RPS10
AXDND1
TBX2
DOLPP1
STX18
RAB5B
KANSL3
DONSON
UPF3A
HSPA1B
NPAS4
ATF6
SP5
CBFA2T2
OTUD7B
KATNB1
PANK2
RBPJ
FRA10AC1
CCDC174
PGK1
DPP9
SMARCD2
GATA4
MTMR4
DUSP6
HUS1
FOXP1
ZNF687
XKR7
TBX3
ARRDC4
ARSG
NRL
SRSF11
MRPS31
QPRT
ALKBH7
ST18
RFX1
LRRC40
POLDIP3
NFKBIA
STIP1
OSBP
RMND5A
DCAF11
PDE4D
PPCDC
RARG
PCNA
IQSEC3
SOD2
ATP5F1B
GPCPD1
RNF207
MRPL34
SLC45A4
MDM2
KMT5A
LPCAT3
RUNX1T1
PPP6R3
SMIM20
SP1
ANKHD1-EIF4EBP3
ANKHD1
EIF2AK3
HEXIM2
SNX16
KAZALD1
MACROH2A1
GRSF1
CRLS1
TLE6
KNL1
HNRNPD
KCNAB2
POLG
MLEC
TNFRSF19
SHF
SACM1L
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
MTF2
PKN2
CCDC43
SMG6
PRMT5
KDM3A
DAGLB
EIF3D
NLK
FBXO31
ANKRD28
SLC30A4
COX5A
ZNF503
SERPINE1
RAB37
RTN4
HNMT
SREBF1
EIF4H
NKD1
HMGB1
ARHGEF10L
ILF2
GATD3B
GATD3A
RHBDD1
CDS2
PRKACA
TDRKH
DIABLO
CBX5
TMEM101
KIAA0319
EVI5L
ARID4A
TXNDC11
LUC7L2
TOP2A
SEC14L1
G3BP1
HTR5A
MBD2
ZNF76
WTAP
PRDM10
ARHGAP4
TRIB1
AIFM2
TCTEX1D4
BTBD19
TIGD1
EIF4E2
USP42
DUSP9
NRSN2
IQGAP2
RNF149
NR2C1
GOT1
RASSF2
USPL1
SH3BP2
TMEM60
PHTF2
INAFM2
ING1
PIKFYVE
HMGCS1
IRF9
CCDC88A
TUBGCP3
ACYP1
B4GAT1
ROGDI
FAM107B
EIF1B
CPSF4L
NHLRC1
HNRNPA2B1
CMSS1
SCAP
BHLHE40
EXOSC4
EPM2A
YTHDF2
ANKS4B
STX16
LCK
TSPAN4
GFOD1
TCHP
MFSD11
POLR3E
PARK7
NANP
HPCAL1
NEO1
HSP90B1
CYB5R4
PCGF1
PCTP
ICAM1
FAAP24
CEP89
ANP32E
MPND
LTBR
ZC2HC1C
SEPTIN9
DLC1
TUBB4B
UBE2C
SRCAP
LOC730183
MVD
POLR2J3
SLC25A19
GBA
MEPCE
CLCN3
GPATCH8
HNRNPC
TRAF4
ATP23
TBL1X
MPV17L2
CELSR3
ADAP1
TANK
CASC3
CALM2
LBX2
CCDC107
HSPE1-MOB4
HSPE1
HSPD1
CDC42EP3
PRR14
CLK1
H4C12
GLRX5
TMEM94
HNRNPUL1
IRS1
DUSP12
ARNTL
YARS1
S100PBP
SNX3
ZCWPW1
ZNF148
LRRC59
METTL25
CCDC59
ZCCHC3
STAT3
FMC1-LUC7L2
FMC1
DDX1
SHB
NCBP2AS2
NCBP2
ABHD2
TMPPE
GLB1
NCOA7
HECTD4
TCERG1
DNAJB1
SLC9A1
CSRNP1
KPNB1
CYCS
C8orf37
MTRF1L
JUP
STARD4
FILIP1L
BAZ1B
KIAA0319L
NRSN1
HOXC5
HIBADH
ARIH2
ZNF740
CSAD
TOMM40
FAM227B
DTWD1
SERPINB9
MSMO1
ACVR1
GGT1
FAM72D
RSRC1
NBPF1
CCNL1
PEX14
NKIRAS1
NUF2
RAB11A
SLX1B
SLX1A
BOLA2B
ELOVL6
LRCH4
FBXO24
MBD6
FBXO41
TRIP4
LAPTM5
PXMP4
ETV4
LNPEP
NAT8
MFSD6
ARID5A
PSMD3
SRSF2
NFE2
DCP1A
KAT7
MTRNR2L9
HEBP2
ACTL6A
CEBPE
ELF1
CCPG1
C15orf65
ZNF219
MYADM
HBP1
FASTKD1
USP3
PSMD9
HPD
DYNLT1
MRPL4
SKA2
PRR11
ATXN1L
RASSF5
LONRF3
HOXC6
CPVL
CALR
MAF1
TMEM9
HMGN4
EEF1AKNMT
CDCA7L
MANF
HSPA5
SKIV2L
NELFE
BOLA2
RPS6KA1
KHSRP
CLTC
OTUD4
HINT2
GSTA4
AP3M2
PARP2
IL6ST
C3
TBRG4
TLN1
CREB3
SNRPF
ARMC1
L1CAM
CIC
PLEKHA6
HNRNPL
GLRA1
LOC100289561
HOXC4
TRIM44
RAD50
LDLR
C16orf54
PGP
KEAP1
SLCO4C1
TRIM41
ADAM17
TXNRD1
CABIN1
TOP2B
CPLX2
CNPY3
PEX3
ADAT2
BHLHA15
CHN2
POR
OPA1
TMEM86A
NR1D2
UBAP2
MFN2
STT3A
STK38
IARS1
AOPEP
RFESD
MAP11
USP15
FAM72C
ADRM1
TIGD2
YIF1A
H6PD
PSMF1
SPSB3
NUBP2
H4C8
PTGES3
BIN2
DIAPH1
SPIN1
RPS24
RBM15
BRD2
CBWD5
ADGRG3
CYBA
IQCH
AAGAB
TMEM259
SLC24A1
BAIAP2
GTF2H2
AKIRIN1
PARL
SPECC1
KDM1A
NBN
KMT5C
CYP1A1
C11orf24
WBP4
RNASEH1
RPS6KB2
NBEAL2
NADK
H4C14
DIAPH3
KAT6A
DYNLL1
C1RL
NCDN
BOLA2-SMG1P6
IBTK
MAPKAPK3
CISH
GBE1
MAP3K3
ZBTB45
FGR
TMBIM6
MED9
H2AZ2
DENND4B
SEMA5B
SIRT4
SERTAD2
SPAG7
FAM162A
CCDC58
ZNF292
TMEM222
VIRMA
SLC35E3
PXYLP1
CNOT1
E2F3
TMCO6
GRHL3
MTHFD1L
MFSD8
ABHD18
CDKN2D
CEP70
FAM72A
SH3TC1
TLE3
CBWD3
HESX1
NIBAN2
MAN2C1
SLC11A2
ACAT2
PKM
ZNF77
SEPTIN2
PWWP2A
HDLBP
LEKR1
WNT10B
PIWIL2
WDR25
WARS1
MAD2L1BP
ZFYVE21
XRCC3
CD38
PIK3AP1
AKAP1
SLC35E2A
CLIC4
GATAD2A
DRAP1
C11orf68
PLIN2
PTP4A2
DZIP3
CIP2A
MTHFR
AGT
TMX2
MED19
OTX1
EIF4A3
GRWD1
LFNG
C12orf65
SRPRA
TRIAP1
PMPCB
BCAR3
MED23
KLF17
IDH1
NFE2L1
FGFRL1
TMEM217
TBC1D22B
RNF139
THUMPD3
GFER
PACSIN2
PDK2
MTMR12
MTERF4
H2AX
H4C3
MSANTD4
AK2
ZDHHC4
HNRNPA1
RNF34
MAPKBP1
TOB2
RPS8
MRPS23
NFE2L2
TBCCD1
IFRD2
ZC3H6
MAEA
STMN3
C6orf89
SERPINB6
SLC33A1
AURKAIP1
UBL7
KATNA1
MLLT11
FAM110A
CDC42SE1
TOM1L2
MIA2
DRC3
DUS1L
CLK2
PPP1R13B
CX3CL1
FGA
SDE2
SPATA1
GTF2H2C_2
GTF2H2C
TRAF2
ZNF341
ARFGAP2
RECQL
GOLT1B
C6orf136
PCK1
ASB1
TEDC1
STK11
HAL
NOTCH2
SLC51B
TRABD
TOP1MT
SLC25A45
SLC39A13
CIPC
UGP2
IL27
LEMD2
DENND2D
MCU
BZW2
LRRC45
CENPX
CTNNB1
PPIB
MGST2
H4C15
ACACA
RBM25
NREP
PLEKHA7
RXRA
PA2G4
TRMT6
MRPS15
MCM8
MVK
HERC5
PSMB3
R3HCC1
RCL1
MAPRE2
BDH1
FDFT1
NME1
FNTA
TLX2
TIMM44
HECTD3
PHF8
PLCB2
ATF3
ZBTB20
UPP1
SNRPD2
QPCTL
KBTBD2
DDIT4
GDPGP1
CIB1
BNIP2
IST1
RASGRP2
CDC25C
SAXO2
EFL1
LRRC37A3
ABCA12
ZNF414
SRP9
FDPS
GMEB2
DROSHA
C5orf22
COQ10A
MYT1L
HHAT