ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX6039038 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◣ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

RABL2B
RABL2A
ZNF335
PSMD1
MAPKAPK5
CACTIN
POLR3F
DZANK1
NME6
NVL
PSMG2
CEP76
SUDS3
DYNC1LI2
VTI1B
IPO13
NCLN
VDAC2
HSPA9
RWDD1
EFTUD2
CCDC103
NUP85
EXOSC5
BCKDHA
GATA4
RPL21
REXO1
DCTN1
HOXA2
SLC35B1
TBCK
AIMP1
NUP205
POLR2E
SRD5A1
NSUN2
BBS9
SEC61B
STAM2
MRPS7
GGA3
STAM
ARHGEF10L
C19orf48
TSN
ATP5MG
BLCAP
GOSR2
UPF2
PES1
ACTR10
IRGQ
ZNF576
HADHB
HADHA
HOXB3
VARS1
SUPV3L1
PSMD12
MRPS5
SKP1
TSNAX
RBBP5
GOLGA5
PAK1IP1
C6orf52
LYRM4
FARS2
PNO1
FARSB
PCBP1
TTC8
C17orf80
FAM104A
RPS23
ATP6AP1L
NDUFA4
ISCU
SART3
PI4KB
SMC2
RUNX1T1
TMED1
RABGGTB
MRPL11
USP1
ZRANB2
PROSER1
NHLRC3
COX7A2L
SF3B3
COG4
CELF4
ADK
AP3M1
TBX2
RBKS
BABAM2
ANAPC7
ICE1
TBX3
EIF4ENIF1
RPS12
UFM1
SELENOF
HS2ST1
TM9SF1
CAPRIN1
NR2F1
XPNPEP3
ST13
RPS27A
CLHC1
DMD
DPH6
PAF1
MED29
PDAP1
BUD31
IQCG
RPL35A
LIN28A
OSGEP
APEX1
ELOVL6
CLGN
APOM
BAG6
DDX39B
VPS13A
CXXC4
NDUFA10
COMMD1
CCT4
HEXIM2
NEO1
OAZ3
DIAPH3
PDE12
STK36
RNF25
PIN4
MGST1
ZFHX4
SUCLG1
MRTFB
PRUNE2
ZNF503
ZNF608
ASPG
POU2F1
ACKR3
NIBAN1
KIAA1217
FLVCR1
PKDCC
CCDC183
CNPY2
PTGES2
ACVR1
MRTO4
EMC1
PLAGL1
ARHGAP11A-SCG5
ARHGAP11A
P2RX6
C9orf153
HOXA4
SEH1L
ZFHX3
CCDC200
HOXB9
ZNF587B
FGF7
PPFIA2
TLE4
SEC11C
EIF3D
RSRC1
CNR1
TAF9
RAD17
AK6
EYA1
PRR13
RPS29
LRR1
HES1
TNP1
ZGPAT
ARFRP1
RPL7
RDH10
CDC42EP3
ZBTB18
GTF3C4
DDX31
NT5C3A
SCHIP1
POLDIP3
TMEM9
POLR3A
DSCAML1
ZP3
RARA
SORBS2
CPA1
LIX1
HOXC5
CYP26A1
ABCC9
COLEC12
SKIL
PPP1R3D
FAM217B
ZNF383
RAB30
HOXA3
ATP1A1
MYLK3
CDC73
ID2
CACYBP
TMSB4Y
KDM3A
RPN1
SALL4
CDH3
GABRB2
MEIS2
PEDS1-UBE2V1
PEDS1
TTI2
GFRA3
CS
NNMT
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
HOXA5
TXNRD1
VTN
GORAB
USP34
PDGFRA
REC8
MGST2
IRS2
TLE2
METTL25
CCDC59
STRA6
EIF2S3
HNRNPD
COL5A2
HOXB8
PDHX
APIP
VANGL2
MDC1
NBAS
SLITRK6
FGF8
ZNF746
CAPN7
TBX18
CEP70
EDNRB
ALKBH5
IGF2BP3
UNKL
GADD45GIP1
CALM2
ALG10B
PDE7A
CCN2
IL1RAPL1
NDUFB3
FAM126B
HSPA1B
C12orf29
WDR74
ID3
DUSP9
HEY2
DNAJB4
CREB5
HAND2
ST7
OTUD4
FOXP1
MRPL39
MRPL38
SEMA3E
BRD3
NEURL2
CTSA
ECHDC1
SPRR2F
ESRRG
TNRC18
KANK1
NELL2
SMAD7
MCF2
TCF4
ZNF644
DZIP3
CIP2A
MPPED2
AHNAK
SH3BP4
PCDH15
GTF2H5
PKIA
IKZF4
ETV1
NR2F2
FHL1
PLEK2
DCN
RCOR1
PCBD2
TNFRSF19
RARB
UBE2I
RPS10-NUDT3
RPS10
DUSP6
GRWD1
SH2B1
TRIM24
CSNK1A1
GDE1
GFRA1
IL19
IGFL2
RAPGEF4
CSDC2
SIRT4
ATG2A
CFAP69
STARD13
CDH18
BNIP2
ZYX
H2BC5
MAML3
ANK3
RAP2C
SRRM3
USP17L15
CDA
CLCN3
DLAT
RBM25
KMT2A
PDCL3
PCDH18
VIM
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
CRY1
SLC30A4
TBC1D5
DNAH12
UGT2B11
DLG2
MID1
YTHDF2
MSX2
CBFA2T2
RARG
ZNF341
SYNJ2BP-COX16
SYNJ2BP
HOXB5
OTUD7B
GOLM2
SASH1
HOXB13
SPIN1
TBC1D9
ELF1
WBP4
RAPGEF2
ANKS1B
NSD2
TAS2R9
TFAP4
PCNX4
TMED7-TICAM2
TMED7
ANXA11
VPS33B
ARAP2
H3C12
IFI16
PYDC5
NDUFS7
ITGAV
SVEP1
KAT6B
SERTAD2
XPR1
SLC18A1
GLT8D1
SPCS1
PAM
ALG5
TTLL6
SLC25A6
EIF4A2
NEK7
PAQR8
EIF3A
FGD3
TCHP
HIBADH
DRAP1
C11orf68
SMIM20
MEF2C
AXDND1
RNF207
GAS1
RGS5
CLDN2
XPO1
CPN2
ST3GAL6
SEMA3A
CCDC174
UBA3
LIN28B
ATP5MC1
JMJD1C
UTRN
EVA1B
AJUBA
CLASP2
SKIV2L
NELFE
RCOR3
SKAP2
PDCD4
PRSS47
ACYP1
ZC2HC1C
AKIRIN1
PNN
SRCAP
LOC730183
CMTR1
ARID5B
ACBD6
CTF1
RNF125
SGK3
RASSF4
ADAMTSL4
YAP1
ATF6
CBX3
CHD8
HNRNPA2B1
ADM
MYADM
MAD2L2
ZNF391
DRAXIN
E2F6
CEP85L
KAT6A
ABHD12
TRIM41
HOXB2
AMOTL2
ZBTB20
MEIS3
SLC28A3
ALPK2
THUMPD3
MRTFA
GLRX2
IFT74
BCL9
HUS1
NCBP3
REL
COX7A2
ISG15
NELFA
LDB1
MFAP4
ACTB
MAP4
TNNT2
COL23A1
QPRT
ZSCAN30
MYO16
DUSP4
RERE
KLHDC9
KANSL3
POLR2J3
HINT2
PHACTR2
SULF1
MTRF1L
SYNJ2
ARHGEF1
PPIP5K2
ALX1
ECSIT
CNOT2
NCOA7
ITGBL1
BAG2
TBPL1
KIAA2026
SLC26A8
NBN
ATAD2
MARCKS
SEC14L5
SHB
KCNT2
TRIP12
FBXO36
CPVL
CHN2
EPHA3
JAK1
ARHGDIB
SLC18B1
BEND4
ZNRF1
FABP5
ELAPOR2
CEP41
SH3BGR
LCA5L
DEDD
MDK
NEUROG2
NEUROG3
MTRNR2L2
MTRNR2L8
SPATC1L
VEZT
FGD6
BICRA
FLOT1
PMAIP1
C16orf91
NEUROG1
ATOH1
SP2
DHRS3
BNIP3
IGFBP2
GPR108
ANKLE2
DNM2
TPRA1
TEPSIN
NDUFAF8
P4HB
MINDY2
DOLPP1
STX18
RAB5B
CAMTA1
DONSON
UPF3A
NPAS4
ANK2
SP5
PDHB
KATNB1
PANK2
RBPJ
FRA10AC1
PGK1
DPP9
SMARCD2
MTMR4
ZNF687
XKR7
ARRDC4
ARSG
NRL
KIF21B
SRSF11
MRPS31
ALKBH7
ST18
RFX1
LRRC40
NFKBIA
STIP1
OSBP
RMND5A
DCAF11
INSM1
PDE4D
PPCDC
PCNA
IQSEC3
SOD2
ATP5F1B
GPCPD1
MRPL34
SLC45A4
MDM2
KMT5A
LPCAT3
PPP6R3
SP1
MALRD1
ANKHD1-EIF4EBP3
ANKHD1
EIF2AK3
SNX16
KAZALD1
MACROH2A1
GRSF1
CRLS1
GADD45G
TLE6
KNL1
KCNAB2
POLG
TMEM70
MLEC
SHF
SACM1L
MYRIP
METTL11B
MTF2
PKN2
CCDC43
SMG6
PRMT5
DAGLB
RBBP7
NLK
FBXO31
ANKRD28
COX5A
SERPINE1
RAB37
RTN4
HNMT
SREBF1
EIF4H
NKD1
HMGB1
ILF2
GATD3B
GATD3A
RHBDD1
CDS2
PRKACA
TDRKH
DIABLO
CBX5
TMEM101
KIAA0319
EVI5L
NCOA2
ARID4A
TXNDC11
LUC7L2
TOP2A
ID1
PNKD
SEC14L1
G3BP1
HTR5A
MBD2
ZNF76
BFSP1
WTAP
PRDM10
ARHGAP4
TRIB1
AIFM2
TCTEX1D4
BTBD19
TIGD1
EIF4E2
USP42
NRSN2
IQGAP2
RNF149
NR2C1
GOT1
RASSF2
NEDD9
USPL1
SH3BP2
TMEM60
PHTF2
INAFM2
ING1
PIKFYVE
HES3
HMGCS1
IRF9
CCDC88A
TUBGCP3
B4GAT1
ROGDI
FAM107B
EIF1B
CPSF4L
NHLRC1
CMSS1
SCAP
BHLHE40
EXOSC4
EPM2A
ANKS4B
STX16
LCK
TSPAN4
GFOD1
MFSD11
POLR3E
PARK7
NANP
HPCAL1
PRDM12
HSP90B1
CYB5R4
PCGF1
PCTP
ICAM1
FAAP24
CEP89
ANP32E
MPND
LTBR
SEPTIN9
DLC1
TUBB4B
UBE2C
MVD
SLC25A19
GBA
BRWD1
MEPCE
GPATCH8
HNRNPC
TRAF4
ATP23
TBL1X
MPV17L2
CELSR3
ADAP1
TANK
CASC3
LBX2
ARHGAP24
CCDC107
HSPE1-MOB4
HSPE1
HSPD1
PRR14
CLK1
H4C12
GLRX5
TMEM94
HNRNPUL1
IRS1
DUSP12
ARNTL
YARS1
S100PBP
SNX3
ZCWPW1
HOXB4
ZNF148
LRRC59
LPIN1
ZCCHC3
STAT3
FMC1-LUC7L2
FMC1
DDX1
NCBP2AS2
NCBP2
ABHD2
TMPPE
GLB1
HECTD4
TCERG1
DNAJB1
SLC9A1
CSRNP1
KPNB1
CYCS
C8orf37
JUP
STARD4
FILIP1L
BAZ1B
KIAA0319L
NRSN1
ARIH2
ZNF740
CSAD
TOMM40
FAM227B
DTWD1
SERPINB9
MSMO1
GGT1
FAM72D
NBPF1
CCNL1
WBP1L
PEX14
NKIRAS1
NUF2
RAB11A
SLX1B
SLX1A
BOLA2B
LRCH4
FBXO24
MBD6
VOPP1
FBXO41
TRIP4
LAPTM5
PXMP4
ETV4
LNPEP
NAT8
MFSD6
ARID5A
PSMD3
SRSF2
NFE2
DCP1A
KAT7
MTRNR2L9
HEBP2
ACTL6A
CEBPE
CCPG1
C15orf65
ZNF219
HBP1
FASTKD1
USP3
PSMD9
HPD
DYNLT1
MRPL4
SKA2
PRR11
ATXN1L
RASSF5
LONRF3
RGS12
HOXC6
CALR
RAI14
MAF1
HMGN4
EEF1AKNMT
SLC7A5
CDCA7L
MANF
HSPA5
BOLA2
RPS6KA1
KHSRP
CLTC
GSTA4
AP3M2
PARP2
IL6ST
C3
TBRG4
TLN1
CREB3
SNRPF
ARMC1
L1CAM
CIC
PLEKHA6
HNRNPL
GLRA1
LOC100289561
HOXC4
TRIM44
RAD50
LDLR
C16orf54
PGP
KEAP1
SLCO4C1
ADAM17
CABIN1
TOP2B
CPLX2
CNPY3
PEX3
ADAT2
BHLHA15
POR
OPA1
TMEM86A
NR1D2
UBAP2
MFN2
STT3A
STK38
IARS1
AOPEP
RFESD
MAP11
USP15
FAM72C
ADRM1
TIGD2
YIF1A
H6PD
PSMF1
SPSB3
NUBP2
H4C8
PTGES3
BIN2
DIAPH1
RPS24
RBM15
BRD2
CBWD5
ADGRG3
CYBA
IQCH
AAGAB
TMEM259
SLC24A1
BAIAP2
GTF2H2
PARL
SPECC1
KDM1A
KMT5C
CYP1A1
C11orf24
RNASEH1
RPS6KB2
NBEAL2
NADK
H4C14
DYNLL1
C1RL
NCDN
BOLA2-SMG1P6
IBTK
MAPKAPK3
CISH
GBE1
MAP3K3
ZBTB45
FGR
TMBIM6
MED9
H2AZ2
DENND4B
SEMA5B
TBC1D8
SPAG7
FAM162A
CCDC58
ZNF292
TMEM222
VIRMA
SLC35E3
PXYLP1
CNOT1
E2F3
TMCO6
GRHL3