ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584305 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◣ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

NEUROG2
ZNF335
RABL2B
MAPKAPK5
PSMD1
RABL2A
NME6
HES1
IPO13
VEZT
FGD6
NEUROG3
RWDD1
CACTIN
VDAC2
SUDS3
NUP85
POLR3F
DZANK1
HSPA9
IGFBP2
DYNC1LI2
RPL21
NVL
ATP5MG
EFTUD2
CCDC103
VTI1B
PAK1IP1
C6orf52
TBCK
AIMP1
DCTN1
BLCAP
NUP205
POLR2E
ACTR10
SRD5A1
NSUN2
REXO1
DPH6
SKP1
PMAIP1
C19orf48
NCLN
EXOSC5
BCKDHA
STAM2
PSMG2
CEP76
UPF2
MRPS7
GGA3
SLC35B1
STAM
PES1
TSN
PNO1
GOSR2
HADHB
HADHA
SUPV3L1
INSM1
LYRM4
FARS2
FARSB
SEC61B
ANAPC7
RBBP5
CAPRIN1
SKIL
IRGQ
ZNF576
IQCG
RPL35A
RBKS
BABAM2
PSMD12
TSNAX
TMED1
PCBP1
MRPS5
ISCU
SART3
ATOH1
GOLGA5
NDUFA4
VARS1
SF3B3
COG4
EIF4ENIF1
ICE1
TTC8
PAF1
MED29
MRPL11
COX7A2L
RPS12
PI4KB
SMC2
PDAP1
BUD31
BNIP3
RPS23
ATP6AP1L
OSGEP
APEX1
MALRD1
GADD45G
RBBP7
USP1
HES5
HOXA4
ZRANB2
TM9SF1
NEUROG1
C17orf80
FAM104A
SELENOF
HS2ST1
NBAS
RPS27A
CLHC1
DDX39B
UFM1
XPNPEP3
ST13
ADK
AP3M1
UBE2I
ST18
RPS29
LRR1
CPSF4L
RABGGTB
PDHB
PROSER1
NHLRC3
PTGES2
HOXB4
BICRA
PNKD
APOM
BAG6
CBX3
PIN4
GFER
TAF9
RAD17
AK6
NEDD9
GTF3A
PDPN
RYBP
MRTO4
EMC1
DDX3X
SLC10A2
SOX12
SEC11C
MYRIP
STK36
RNF25
HOXD3
RGS12
KAZALD1
CSRNP1
ARHGAP11A-SCG5
ARHGAP11A
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
BFSP1
PRUNE2
COMMD1
CCT4
CCDC200
NDUFA10
METTL11B
GADD45GIP1
PDHX
APIP
TPRA1
TTLL6
RPN1
LPIN1
GFRA3
HNRNPA2B1
TLE4
OTX1
EIF2S3
TIGD1
EIF4E2
SPACA1
RAI14
KIF26A
ZGPAT
ARFRP1
CNPY2
PCBD2
HES3
OAZ3
BRWD1
UPF3A
CLGN
RPL7
RDH10
SUCLG1
CLDN2
CDC73
ANKLE2
SOX11
HNRNPD
RARA
AXDND1
TNC
GTF3C4
DDX31
REC8
WBP1L
DHRS3
TBC1D8
ZNF383
CAMTA1
HOXA3
LIN28B
PDE12
HOXA2
DSCAML1
FGFR4
GORAB
C15orf61
CPN2
ANK2
MAST2
KIF21B
VOPP1
SLC39A6
ELP2
TMEM131L
PRDM12
RBPJ
WDR74
STOML2
TMPPE
GLB1
RADIL
PIPOX
QPRT
KLF17
ZSWIM6
CPLX1
HMGN1
ZNF746
LZTFL1
OR8J1
DHX32
CEMP1
CPVL
CHN2
SYNE4
RPS10-NUDT3
RPS10
TLE2
EIF4H
POLR3A
ALKBH5
SOX6
FABP5
MTCH2
RNF138
JAKMIP1
ZFHX4
MEPCE
ZCWPW1
TRAP1
TLE6
TLE1
SPOCK2
KMT2A
TBL1XR1
ITPRIP
GLT8D1
SPCS1
H3-3A
KMT2B
NUP210
MEX3B
GREB1
USP17L22
USP17L20
PAX3
MUSTN1
MEIS3
STMN1
HEY1
BBS9
KEAP1
EIF4E3
STK38
TFDP2
HOXC5
YAP1
SERPING1
TMEM70
ADM
HOXB9
CER1
CS
MEF2C
TAGLN3
MEIS2
TCF4
TCF20
IL37
RARB
LIN28A
NKIRAS1
NR1D2
ZFHX3
MARCHF7
SP5
SRSF11
LRRC40
BNIP2
PANK2
PCDH18
LDLRAD3
SEMA4B
ERI1
RPRM
PLEKHA6
CSTF2T
M1AP
DUSP6
ABAT
NELFA
REV1
MTRNR2L2
MTRNR2L8
SPATC1L
FLOT1
C16orf91
NDUFS7
SH2B1
SP2
KAT6B
GPR108
MRPL38
NEURL2
CTSA
TTI2
DNM2
ID2
TEPSIN
NDUFAF8
P4HB
MINDY2
TBX2
DOLPP1
STX18
RAB5B
KANSL3
DONSON
HSPA1B
NPAS4
ATF6
CBFA2T2
OTUD7B
KATNB1
FRA10AC1
CCDC174
PGK1
DPP9
SMARCD2
GATA4
MTMR4
HUS1
FOXP1
ZNF687
XKR7
TBX3
ARRDC4
ARSG
NRL
MRPS31
ALKBH7
CNOT2
RFX1
POLDIP3
NFKBIA
STIP1
NR2F1
OSBP
RMND5A
DCAF11
ZNF608
PDE4D
PPCDC
RARG
PCNA
IQSEC3
SOD2
ATP5F1B
GPCPD1
RNF207
MRPL34
SLC45A4
MDM2
KMT5A
LPCAT3
RUNX1T1
PPP6R3
SMIM20
SP1
ANKHD1-EIF4EBP3
ANKHD1
EIF2AK3
HEXIM2
SNX16
MACROH2A1
GRSF1
CRLS1
KNL1
KCNAB2
POLG
MLEC
TNFRSF19
SHF
SACM1L
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
MTF2
PKN2
CCDC43
SMG6
PRMT5
KDM3A
DAGLB
EIF3D
NLK
FBXO31
ANKRD28
SLC30A4
COX5A
ZNF503
SERPINE1
RAB37
RTN4
HNMT
SREBF1
NKD1
HMGB1
ARHGEF10L
ILF2
GATD3B
GATD3A
CEP41
RHBDD1
CDS2
PRKACA
TDRKH
DIABLO
CBX5
TMEM101
KIAA0319
EVI5L
NCOA2
ARID4A
TXNDC11
LUC7L2
TOP2A
ID1
SEC14L1
G3BP1
HTR5A
MBD2
ZNF76
WTAP
PRDM10
ARHGAP4
TRIB1
AIFM2
TCTEX1D4
BTBD19
USP42
DUSP9
NRSN2
IQGAP2
RNF149
NR2C1
GOT1
RASSF2
USPL1
SH3BP2
TMEM60
PHTF2
INAFM2
ING1
PIKFYVE
HMGCS1
IRF9
CCDC88A
TUBGCP3
ACYP1
B4GAT1
ROGDI
FAM107B
CHD8
EIF1B
NHLRC1
CMSS1
SCAP
BHLHE40
EXOSC4
EPM2A
YTHDF2
ANKS4B
STX16
LCK
TSPAN4
GFOD1
TCHP
MFSD11
POLR3E
PARK7
NANP
HPCAL1
NEO1
HSP90B1
CYB5R4
PCGF1
PCTP
ICAM1
FAAP24
CEP89
ANP32E
MPND
LTBR
ZC2HC1C
SEPTIN9
DLC1
TUBB4B
UBE2C
SRCAP
LOC730183
MVD
POLR2J3
SLC25A19
GBA
CLCN3
GPATCH8
HNRNPC
TRAF4
ATP23
TBL1X
MPV17L2
CELSR3
ADAP1
TANK
CASC3
CALM2
LBX2
ARHGAP24
CCDC107
HSPE1-MOB4
HSPE1
HSPD1
CDC42EP3
PRR14
CLK1
H4C12
GLRX5
TMEM94
HNRNPUL1
IRS1
DUSP12
ARNTL
YARS1
S100PBP
SNX3
ZNF148
LRRC59
METTL25
CCDC59
ZCCHC3
STAT3
FMC1-LUC7L2
FMC1
DDX1
SHB
NCBP2AS2
NCBP2
ABHD2
NCOA7
HECTD4
TCERG1
DNAJB1
SLC9A1
ZBTB18
KPNB1
CYCS
C8orf37
MTRF1L
JUP
STARD4
FILIP1L
BAZ1B
KIAA0319L
NRSN1
HIBADH
ARIH2
CMTR1
ZNF740
CSAD
TOMM40
FAM227B
DTWD1
SERPINB9
MSMO1
ACVR1
GGT1
FAM72D
RSRC1
NBPF1
CCNL1
PEX14
NUF2
RAB11A
SLX1B
SLX1A
BOLA2B
ELOVL6
LRCH4
FBXO24
MBD6
FBXO41
TRIP4
LAPTM5
PXMP4
ETV4
LNPEP
NAT8
MFSD6
ARID5A
PSMD3
SRSF2
NFE2
DCP1A
KAT7
MTRNR2L9
HEBP2
ACTL6A
CEBPE
ELF1
CCPG1
C15orf65
ZNF219
MYADM
HBP1
FASTKD1
USP3
PSMD9
HPD
DYNLT1
MRPL4
SKA2
PRR11
ATXN1L
RASSF5
LONRF3
HOXC6
CALR
MAF1
TMEM9
HMGN4
EEF1AKNMT
SLC7A5
ARHGEF1
CDCA7L
MANF
HSPA5
SKIV2L
NELFE
BOLA2
RPS6KA1
KHSRP
CLTC
OTUD4
PKDCC
HINT2
GSTA4
AP3M2
PARP2
IL6ST
C3
TBRG4
TLN1
CREB3
SNRPF
ARMC1
L1CAM
CIC
HNRNPL
GLRA1
LOC100289561
HOXC4
TRIM44
RAD50
LDLR
C16orf54
PGP
SLCO4C1
TRIM41
ADAM17
TXNRD1
CABIN1
TOP2B
CPLX2
CNPY3
PEX3
ADAT2
BHLHA15
POR
OPA1
TMEM86A
UBAP2
MFN2
STT3A
IARS1
AOPEP
RFESD
MAP11
USP15
FAM72C
ADRM1
TIGD2
YIF1A
H6PD
PSMF1
SPSB3
NUBP2
H4C8
PTGES3
BIN2
DIAPH1
SPIN1
RPS24
RBM15
BRD2
CBWD5
ADGRG3
CYBA
IQCH
AAGAB
TMEM259
SLC24A1
BAIAP2
GTF2H2
AKIRIN1
PARL
SPECC1
KDM1A
NBN
KMT5C
CYP1A1
C11orf24
WBP4
RNASEH1
RPS6KB2
NBEAL2
NADK
H4C14
DIAPH3
KAT6A
DYNLL1
C1RL
NCDN
BOLA2-SMG1P6
IBTK
MAPKAPK3
CISH
GBE1
MAP3K3
ZBTB45
FGR
TMBIM6
MED9
H2AZ2
DENND4B
SEMA5B
SIRT4
SERTAD2
SPAG7
FAM162A
CCDC58
ZNF292
TMEM222
VIRMA
SLC35E3
PXYLP1
CNOT1
E2F3
TMCO6
GRHL3
MTHFD1L
MFSD8
ABHD18
CDKN2D
CEP70
FAM72A
SH3TC1
TLE3
CBWD3
HESX1
NIBAN2
MAN2C1
SLC11A2
ACAT2
PKM
ZNF77
SEPTIN2
PWWP2A
HDLBP
LEKR1
WNT10B
PIWIL2
WDR25
WARS1
MAD2L1BP
ZFYVE21
XRCC3
DGKZ
CD38
PIK3AP1
AKAP1
SLC35E2A
CLIC4
GATAD2A
DRAP1
C11orf68
PLIN2
PTP4A2
DZIP3
CIP2A
MTHFR
AGT
TMX2
PEX2
MED19
EIF4A3
GRWD1
LFNG
C12orf65
SRPRA
TRIAP1
PMPCB
BCAR3
MED23
IDH1
NFE2L1
FGFRL1
TMEM217
TBC1D22B
RNF139
THUMPD3
PACSIN2
PDK2
MTMR12
MTERF4
H2AX
H4C3
MSANTD4
AK2
ZDHHC4
HNRNPA1
RNF34
MAPKBP1
TOB2
RPS8
MRPS23
NFE2L2
TBCCD1
IFRD2
ZC3H6
MAEA
STMN3
C6orf89
SERPINB6
SLC33A1
AURKAIP1
UBL7
KATNA1
VANGL2
MLLT11
FAM110A
CDC42SE1
TOM1L2
MIA2
DRC3
DUS1L
CLK2
PPP1R13B
CX3CL1
FGA
SDE2
SPATA1
GTF2H2C_2
GTF2H2C
TRAF2
ZNF341
ARFGAP2
RECQL
GOLT1B
C6orf136
PCK1
ASB1
TEDC1
STK11
HAL
NOTCH2
SLC51B
TRABD
TOP1MT
SLC25A45
SLC39A13
CIPC
UGP2
IL27
LEMD2
DENND2D
MCU
BZW2
LRRC45
CENPX
CTNNB1
PPIB
MGST2
H4C15
ACACA
RBM25
NREP
PLEKHA7
RXRA
PA2G4
TRMT6
MRPS15
MCM8
MVK
HERC5
PSMB3
R3HCC1
RCL1
MAPRE2
BDH1
FDFT1
NME1
FNTA
TLX2
TIMM44
HECTD3
PHF8
PLCB2
ATF3
ZBTB20
UPP1
SNRPD2
QPCTL
KBTBD2
DDIT4
GDPGP1
CIB1
IST1
RCOR3
RASGRP2
CDC25C
SAXO2
EFL1
LRRC37A3
ABCA12
ZNF414
SRP9
FDPS
GMEB2
DROSHA
C5orf22
COQ10A
MYT1L
HHAT
FAM120B
TMEM248
METTL26
RBM27
ANAPC5