ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX6039042 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◣ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

RABL2A
RABL2B
ZNF335
PSMD1
MAPKAPK5
DYNC1LI2
NME6
SUDS3
IPO13
PSMG2
CEP76
POLR3F
DZANK1
CACTIN
VTI1B
NVL
NUP205
NCLN
TBCK
AIMP1
HADHB
HADHA
EFTUD2
CCDC103
NUP85
SRD5A1
NSUN2
POLR2E
RPL21
TSNAX
DCTN1
RWDD1
REXO1
STAM2
MRPS7
GGA3
HSPA9
ID2
HOXA2
VDAC2
SLC35B1
FARSB
SKP1
STAM
LYRM4
FARS2
EXOSC5
BCKDHA
BBS9
GOSR2
VARS1
MRPS5
IRGQ
ZNF576
UPF2
TSN
PSMD12
PAK1IP1
C6orf52
RPS23
ATP6AP1L
DPH6
ATP5MG
GOLGA5
C19orf48
CAPRIN1
EIF4ENIF1
IQCG
RPL35A
SMC2
SEC61B
PES1
TTC8
RBKS
BABAM2
PI4KB
BLCAP
TM9SF1
COMMD1
CCT4
COX7A2L
RBBP5
SUPV3L1
PNO1
ACTR10
TMED1
NDUFA4
USP1
ZRANB2
ISCU
SART3
RBPJ
C17orf80
FAM104A
ANAPC7
PDAP1
BUD31
OSGEP
APEX1
ICE1
ADK
AP3M1
SELENOF
HS2ST1
RABGGTB
XPNPEP3
ST13
UFM1
ZFHX3
RPS27A
CLHC1
PROSER1
NHLRC3
MRPL11
PCBP1
CLGN
LTBR
SCNN1A
PTK2B
C12orf29
RPS12
ZGPAT
ARFRP1
ZNF608
NEO1
CDC42EP3
SF3B3
COG4
PAF1
MED29
NSUN6
ARL5B
PDE12
TLE2
PTGES2
VANGL2
NR2F1
HEXIM2
RBMS3
APOM
BAG6
GATA4
GABRB2
MRTO4
EMC1
MYRIP
HEY2
GADD45GIP1
MBD2
NDUFA10
EIF2S3
ACOT2
ST7
MSX2
SLC30A4
RPS29
LRR1
SUCLG1
ZNF383
DIAPH3
ZNF746
HES1
ARHGEF10L
LAMA3
CDC73
CABIN1
SKIL
SEMA3E
ST18
TNK2
RPL7
RDH10
DDX39B
BNIP3
CACYBP
PDHX
APIP
KAT6B
LIN28A
RARA
FREM2
SEC11C
TBX2
TXNRD1
TBC1D9
ARHGAP11A-SCG5
ARHGAP11A
GORAB
PIN4
PCBD2
OAZ3
ZFHX4
HOXA1
SMAGP
FMN1
FOXP1
SERTAD2
MET
TTI2
PCDH15
CDS1
MGP
PRUNE2
CNPY2
MKRN2
GTF3C4
DDX31
GTDC1
ARAP2
EPM2A
GLT8D1
SPCS1
ALKBH5
IL20
NDUFB3
FAM126B
CNR1
FRRS1
RSRC1
CXXC4
ATOH1
GPR108
RPS10-NUDT3
RPS10
USP17L15
NDUFS7
TAF9
RAD17
AK6
RPN1
GFRA1
TNFRSF19
ZNF395
NLGN1
METTL25
CCDC59
MYZAP
GCOM1
KDM3A
OTUD7B
INKA2
SPAG17
RARG
WDR74
DONSON
DHRS3
TIGD1
EIF4E2
TMEM70
SPIN1
BNIP2
GEMIN2
ZNF341
TMEM106B
PRTG
ID1
SLITRK6
MRPL34
ABHD8
HOXA4
EIF3D
ACKR3
B3GNT5
MAPRE1
MEIS2
POGLUT3
SLC25A53
RUNX1T1
DENR
CFAP69
SCOC
STK36
RNF25
PEX14
KMT2A
POLR3A
TMPRSS11F
LIX1
MCU
REC8
CYP26A1
RABGAP1L
CTF1
ELOVL6
ATXN2
SLC25A6
ACOT1
LMO1
SEMA6D
NEFH
UBE2I
REL
RNF207
BRWD1
SEPTIN2
HDLBP
CISD1
IPMK
COX5A
OSGIN2
NELFA
KAT6A
FGD3
USP34
APLN
C16orf91
TCF7
EOMES
PRKD1
NXPH4
ADM
SHB
H2BC5
CALM2
MIGA1
ZNF385B
VPS33B
HUS1
YTHDF2
ADAMTSL4
SRSF11
LRRC40
CBWD5
CBWD3
CRABP2
SMARCD2
MYADM
TRPM7
IGFBP2
PDHB
EBAG9
RBBP8NL
DNMBP
SPATC1L
CIAO2A
TPRA1
CCDC174
PHIP
ZNF507
CS
ACYP1
ZC2HC1C
IMMP1L
ELP4
PDE4D
PDCL3
PXMP2
POLE
LOC100287896
LIPT2
STX19
KANSL3
ATXN1L
PCLO
SSBP2
HSPA4L
CLCN3
OTUD4
ZBTB17
SYNJ2BP-COX16
SYNJ2BP
COQ5
DUSP9
ITGAV
UFSP1
EIF4H
TBX3
MGST1
NR2C2
TANC2
HNRNPD
ZDHHC17
ACBD6
RILPL1
ACTR3B
PRR13
CDKL2
FANCL
FAM168B
POU2F1
RPRM
TMSB4Y
TMPRSS12
SH2B1
CBX3
MTF2
HNRNPA2B1
IGF2BP3
UROS
BCCIP
VEPH1
CEP70
PRKAG2
SLC40A1
TLE4
TCHP
ESRRG
CYP51A1
DLAT
NEUROG1
POLR2J3
ARSB
KCNH1
SORBS2
GTF2IRD2
LSM8
NRDE2
ZNF844
NCBP3
IMPA1
YEATS2
KLHL32
MELTF
KCNS3
CBWD6
CNOT10
PTGES3
TMPPE
GLB1
MEMO1
EML5
BCAS2
RASSF6
GPRC5A
CCNC
JAK1
TCF4
BAG2
PDE4DIP
MTMR10
RTL6
TAF1A
C2CD5
PALLD
PCTP
PEX2
GGH
IFI16
PYDC5
STX18
MTMR2
MPP5
EYA1
CCDC102A
UBE2V2
HOXA3
SNX3
PXYLP1
ZBED9
EID2
GPR37
SPECC1
EPHA6
ATXN7L2
PIP4K2B
ID3
NEUROG2
FOXJ3
USP12
CMSS1
FILIP1L
PLIN2
IFT22
BAMBI
COLEC12
PLEKHD1
C6orf136
RAB11FIP2
NEK3
CMTR1
ZNF384
ARHGEF5
CFAP46
CAPZA2
TBC1D5
PLS1
BCAP29
RYBP
EFCAB2
LUZP2
FAM162A
CCDC58
ARL14EP
TTK
PHACTR2
SCAP
VWA8
ZSCAN12
PELI2
SBF2
RAI14
PPP1R13B
TXNDC11
SEMA4B
KMT5C
RPS3A
DRAM1
NUTM2E
EIF5
MRPS36
ERCC6L2
PIGU
WDR11
REV1
CEP41
RHOBTB1
HEBP2
PIK3R1
SKAP2
MANEA
FSTL3
ADH1C
ADAMTS7
C15orf61
SMARCAD1
NR2C1
FNDC3A
MGST2
ANKRD36C
JMJD1C
GDF6
ATP6V0A4
NT5DC3
NEUROG3
MTRNR2L2
MTRNR2L8
RARB
VEZT
FGD6
BICRA
FLOT1
PMAIP1
CCDC200
SP2
MRPL38
NEURL2
CTSA
ANKLE2
DNM2
NBAS
TEPSIN
NDUFAF8
P4HB
MINDY2
AXDND1
DOLPP1
RAB5B
CAMTA1
UPF3A
HSPA1B
NPAS4
ANK2
ATF6
SP5
CBFA2T2
KATNB1
PANK2
FRA10AC1
PGK1
DPP9
MTMR4
DUSP6
ZNF687
XKR7
ARRDC4
ARSG
NRL
KIF21B
MRPS31
QPRT
ALKBH7
CNOT2
RFX1
POLDIP3
NFKBIA
STIP1
OSBP
RMND5A
DCAF11
INSM1
PPCDC
PCNA
IQSEC3
SOD2
ATP5F1B
GPCPD1
SLC45A4
MDM2
KMT5A
LPCAT3
PPP6R3
SMIM20
SP1
MALRD1
ANKHD1-EIF4EBP3
ANKHD1
EIF2AK3
SNX16
KAZALD1
MACROH2A1
GRSF1
CRLS1
GADD45G
TLE6
KNL1
KCNAB2
POLG
MLEC
SHF
SACM1L
METTL11B
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
PKN2
CCDC43
SMG6
PRMT5
DAGLB
RBBP7
NLK
FBXO31
ANKRD28
ZNF503
SERPINE1
RAB37
RTN4
HNMT
SREBF1
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
NKD1
HMGB1
ILF2
GATD3B
GATD3A
RHBDD1
CDS2
PRKACA
TDRKH
DIABLO
CBX5
TMEM101
KIAA0319
EVI5L
NCOA2
ARID4A
LUC7L2
TOP2A
PNKD
SEC14L1
G3BP1
HTR5A
ZNF76
BFSP1
WTAP
PRDM10
ARHGAP4
TRIB1
AIFM2
TCTEX1D4
BTBD19
USP42
NRSN2
IQGAP2
RNF149
GOT1
RASSF2
NEDD9
USPL1
SH3BP2
TMEM60
PHTF2
INAFM2
ING1
PIKFYVE
HES3
HMGCS1
IRF9
CCDC88A
TUBGCP3
B4GAT1
ROGDI
FAM107B
CHD8
EIF1B
CPSF4L
NHLRC1
BHLHE40
EXOSC4
ANKS4B
STX16
LCK
TSPAN4
GFOD1
MFSD11
POLR3E
PARK7
NANP
HPCAL1
PRDM12
HSP90B1
CYB5R4
PCGF1
ICAM1
FAAP24
CEP89
ANP32E
MPND
SEPTIN9
DLC1
TUBB4B
UBE2C
SRCAP
LOC730183
MVD
SLC25A19
GBA
MEPCE
GPATCH8
HNRNPC
TRAF4
ATP23
TBL1X
MPV17L2
CELSR3
ADAP1
TANK
CASC3
LBX2
ARHGAP24
CCDC107
HSPE1-MOB4
HSPE1
HSPD1
PRR14
CLK1
H4C12
GLRX5
TMEM94
HNRNPUL1
IRS1
DUSP12
ARNTL
YARS1
S100PBP
ZCWPW1
HOXB4
ZNF148
LRRC59
LPIN1
ZCCHC3
STAT3
FMC1-LUC7L2
FMC1
DDX1
NCBP2AS2
NCBP2
ABHD2
NCOA7
HECTD4
TCERG1
DNAJB1
SLC9A1
ZBTB18
CSRNP1
KPNB1
CYCS
C8orf37
MTRF1L
JUP
STARD4
BAZ1B
KIAA0319L
NRSN1
HOXC5
HIBADH
ARIH2
ZNF740
CSAD
TOMM40
FAM227B
DTWD1
SERPINB9
MSMO1
ACVR1
GGT1
FAM72D
NBPF1
CCNL1
WBP1L
NKIRAS1
NUF2
RAB11A
SLX1B
SLX1A
BOLA2B
LRCH4
FBXO24
MBD6
VOPP1
FBXO41
TRIP4
LAPTM5
PXMP4
ETV4
LNPEP
NAT8
MFSD6
ARID5A
PSMD3
SRSF2
NFE2
DCP1A
KAT7
MTRNR2L9
DSCAML1
ACTL6A
CEBPE
ELF1
CCPG1
C15orf65
ZNF219
HBP1
FASTKD1
USP3
PSMD9
HPD
DYNLT1
MRPL4
SKA2
PRR11
RASSF5
LONRF3
RGS12
HOXC6
GFRA3
CPVL
CALR
MAF1
TMEM9
HMGN4
EEF1AKNMT
SLC7A5
ARHGEF1
CDCA7L
MANF
HSPA5
SKIV2L
NELFE
BOLA2
RPS6KA1
KHSRP
CLTC
PKDCC
HINT2
GSTA4
AP3M2
PARP2
MEF2C
IL6ST
C3
TBRG4
TLN1
CREB3
SNRPF
ARMC1
L1CAM
CIC
PLEKHA6
HNRNPL
GLRA1
LOC100289561
HOXC4
TRIM44
RAD50
LDLR
CLDN2
C16orf54
PGP
KEAP1
SLCO4C1
TRIM41
ADAM17
TOP2B
CPLX2
CNPY3
PEX3
ADAT2
BHLHA15
CHN2
POR
OPA1
TMEM86A
NR1D2
UBAP2
MFN2
STT3A
STK38
IARS1
AOPEP
RFESD
MAP11
USP15
FAM72C
ADRM1
TIGD2
YIF1A
H6PD
PSMF1
SPSB3
NUBP2
H4C8
BIN2
DIAPH1
RPS24
RBM15
BRD2
ADGRG3
CYBA
IQCH
AAGAB
TMEM259
SLC24A1
BAIAP2
GTF2H2
AKIRIN1
PARL
KDM1A
NBN
CYP1A1
C11orf24
WBP4
RNASEH1
RPS6KB2
NBEAL2
NADK
H4C14
DYNLL1
C1RL
NCDN
BOLA2-SMG1P6
IBTK
MAPKAPK3
CISH
GBE1
MAP3K3
ZBTB45
FGR
TMBIM6
MED9
H2AZ2
DENND4B
SEMA5B
TBC1D8
SIRT4
SPAG7
ZNF292
TMEM222
VIRMA
SLC35E3
CNOT1
E2F3
TMCO6
GRHL3
MTHFD1L
MFSD8
ABHD18
CDKN2D
FAM72A
SH3TC1
TLE3
HESX1
NIBAN2
MAN2C1
SLC11A2
ACAT2
PKM
ZNF77
PWWP2A
LEKR1
WNT10B
PIWIL2
WDR25
WARS1
MAD2L1BP
ZFYVE21
XRCC3
DGKZ
CD38
PIK3AP1
AKAP1
SLC35E2A
CLIC4