ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX6039041 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◣ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
RABL2B
PSMD1
RABL2A
SUDS3
POLR3F
DZANK1
DYNC1LI2
PSMG2
CEP76
MAPKAPK5
NME6
CACTIN
IPO13
NVL
TBCK
AIMP1
RWDD1
HADHB
HADHA
RPL21
NCLN
VTI1B
EFTUD2
CCDC103
NUP85
SRD5A1
NSUN2
ID2
SLC35B1
NUP205
POLR2E
STAM
HSPA9
EXOSC5
BCKDHA
TSNAX
MRPS7
GGA3
HOXA2
REXO1
STAM2
DCTN1
VDAC2
UPF2
SKP1
LYRM4
FARS2
ATP5MG
GOLGA5
SMC2
BBS9
COMMD1
CCT4
FARSB
C19orf48
SUPV3L1
PAK1IP1
C6orf52
GOSR2
PSMD12
BLCAP
RPS23
ATP6AP1L
DPH6
VARS1
PES1
NDUFA4
SEC61B
IRGQ
ZNF576
TTC8
ZRANB2
TSN
SELENOF
HS2ST1
TMED1
MRPS5
PNO1
TM9SF1
COX7A2L
RBKS
BABAM2
EIF4ENIF1
ANAPC7
USP1
IQCG
RPL35A
RBBP5
CAPRIN1
PI4KB
ISCU
SART3
ICE1
MRPL11
PDAP1
BUD31
RABGGTB
RPS27A
CLHC1
ADK
AP3M1
C17orf80
FAM104A
PROSER1
NHLRC3
XPNPEP3
ST13
ACTR10
PDE12
RBPJ
CDC42EP3
ZFHX3
OSGEP
APEX1
LTBR
SCNN1A
NEO1
RPS12
APOM
BAG6
UFM1
C12orf29
PTK2B
ZNF608
CLGN
PCBP1
PTGES2
NR2F1
NSUN6
ARL5B
CCDC200
PAF1
MED29
VANGL2
SF3B3
COG4
DIAPH3
RBMS3
GABRB2
LAMA3
EIF2S3
ST18
TLE2
ZGPAT
ARFRP1
HEXIM2
MRTO4
EMC1
HBB
GADD45GIP1
PIN4
MBD2
DDX39B
SUCLG1
GATA4
SLC30A4
NDUFA10
MSX2
TTI2
MYRIP
CXXC4
CABIN1
ARHGAP11A-SCG5
ARHGAP11A
SEMA3E
TMEM106B
RSRC1
HEY2
CNR1
KAT6B
TBX2
MET
BNIP3
RARA
ARHGEF10L
RPS29
LRR1
CDS1
OAZ3
HES1
MKRN2
PRUNE2
PDHX
APIP
CACYBP
STK36
RNF25
SMAGP
ZNF746
SEC11C
SPAG17
ZFHX4
KDM3A
ST7
RPN1
RPL7
RDH10
FOXP1
EIF3D
LIN28A
CDC73
HOXA4
TBC1D9
CNPY2
PKDCC
METTL25
CCDC59
GFRA1
ZNF383
TXNRD1
TMEM70
TAF9
RAD17
AK6
NDUFS7
CBWD5
CBWD3
CBWD6
CCDC174
FMN1
POLR3A
ACOT2
OSGIN2
TNK2
GPR108
FREM2
SLC25A53
SPIN1
PCBD2
REC8
GTF3C4
DDX31
NDUFB3
FAM126B
TCF7
HOXA1
FRRS1
RABGAP1L
RPS10-NUDT3
RPS10
PCDH15
EPM2A
IL20
GORAB
GTDC1
TBX3
CFAP69
WDR74
TCF4
MGP
SKIL
OTUD7B
ESRRG
TNFRSF19
METRN
ITGAV
MYZAP
GCOM1
RUNX1T1
ALKBH5
MGST1
SLITRK6
ATOH1
FGD3
ZNF507
RGS8
STX19
EMX2
RARG
CS
ZNF395
GEMIN2
PBX2
EOMES
TMPRSS11F
TMEM9
ATXN2
YTHDF2
SYNJ2BP-COX16
SYNJ2BP
CSNK1A1
CISD1
IPMK
CLCN3
POU2F1
GLT8D1
SPCS1
SERTAD2
ACKR3
USP34
NLGN1
ARAP2
MRPL34
ID1
ABHD8
SNX16
PDCL3
NXPH4
C16orf91
CIAO2A
PRR13
CYP26A1
VPS33B
ERP27
UBE2I
USP17L15
NEFH
INKA2
PRKD1
CEP70
ELOVL6
LIX1
RASSF6
HUS1
PEX14
IMMP1L
ELP4
ADM
DUSP9
KAT6A
TMSB4Y
ATXN1L
DENR
SLC25A6
SLC35F2
DONSON
DHRS3
SRSF11
LRRC40
PDE4D
PXYLP1
TIGD1
EIF4E2
SEMA6D
CBX3
HNRNPA2B1
SEPTIN2
HDLBP
NCBP3
B3GNT5
JAKMIP1
MYLK3
PDHB
MEIS2
SLC35E3
ID3
C2CD5
TRIP4
CRABP2
TLE4
HSPA4L
H2BC5
MCU
HSPA1B
RAI14
RARB
RCOR3
SPATC1L
NEUROG1
RIMS1
LMO1
SH2B1
SEH1L
CTF1
RNF207
MGST2
DLAT
KANK1
TMPPE
GLB1
EBAG9
ACOT1
PKN2
HNRNPD
NR2C1
CALM2
SORBS2
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
SHB
ZBED9
USP17L22
USP17L20
POGLUT3
COLEC12
MSS51
TPRA1
AKIRIN1
GPRC5A
AKAP9
ANK3
ADAMTSL4
GOLM2
DERA
CLDN6
MELTF
PRKAG2
FOXP2
PRTG
IFI16
GRHL2
PYDC5
PHIP
APLN
KMT2A
FAAP24
CEP89
STK38
SOX6
YAP1
NEURL2
CTSA
OTUD4
BCAP29
SSBP2
ADH1C
TCHP
JMJD1C
PCLO
CALCRL
LPCAT3
HECTD4
TAF1A
SMARCD2
SLC35E2A
UBA3
TMPRSS12
KANSL3
MACROH2A1
PANK2
COX5A
POLR2J3
CPVL
CHN2
RCOR1
ZSCAN30
PRIM1
GPR37
CMTR1
HOXB13
NR2C2
RNF111
ETV1
REL
EID2
DYNLT1
DLG2
ACYP1
ZC2HC1C
ZKSCAN2
URGCP
CCDC102A
URGCP-MRPS24
MINDY2
SECISBP2L
RILPL1
EML5
ARSB
AP1B1
PEX2
TRIM24
QPRT
EIF4H
FNDC5
IQSEC2
ZDHHC17
BRWD1
MYADM
GIGYF1
POFUT2
KCNS3
ZBTB17
PARP9
DTX3L
UFSP1
NEUROG2
UBE2V2
SALL4
CLK1
BNIP2
IQCB1
EAF2
ING1
NCOA7
MDC1
SKAP2
MYO6
GBP1
PALLD
ZNF385B
MTF2
PNN
CDK6
PJVK
GTF2H5
DNAJA2
PRKRA
DZIP3
CIP2A
ACBD6
PLIN2
RGS2
ZNF341
MIGA1
CD55
NNMT
CTNNA1
VEPH1
PCTP
MRPS28
CMTR2
CMSS1
FILIP1L
HINT2
EYA1
SDR39U1
SLC7A2
PLEKHD1
RBM7
C11orf71
CEP295
TBC1D32
ADAMTS3
IDH1
SCOC
CNOT10
UBB
NUP93
NOX3
MRPS31
ZNF629
DNMBP
SOD2
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
WTAP
DNAJB5
PCNX4
REV1
TK2
NANP
SKIV2L
NELFE
CLTC
BTG1
RPL5
CENPS-CORT
CENPS
DNAH12
FLVCR1
TMEM205
CCDC159
CENPBD1
IFT22
TANC2
NDNF
PTGES3
ZNF3
PHACTR2
BAG3
ACP4
GRAMD2B
NELFA
BAG2
ARL14EP
NIPSNAP2
TLX3
THUMPD3
PPP1R3D
FAM217B
SEMA4B
LSMEM1
NAA40
RHOBTB1
MCF2
FAM110A
TNPO3
ELOA
H3-3A
NRDE2
JAK1
CFAP20
CRADD
CTH
MPPED2
HEBP2
FABP5
IGF2BP3
ROBO3
TBC1D8B
CDKL2
WDR81
LOC100287896
LIPT2
BATF2
TRIP12
FBXO36
ASAH1
B4GALT3
ZFAT
TRPM7
LRP6
MDM2
ZSCAN25
PXMP2
POLE
SASH1
HOXA3
RPS3A
DHCR7
SLC30A9
TAS2R7
TRAP1
IRS2
TM9SF3
EDNRB
PHETA2
TSPAN4
SLX1B
SLX1A
BOLA2B
BOLA2
SERPINB6
MTCH2
RAN
POLR2L
CDKN2AIP
CYP51A1
MANEA
NPNT
FSTL5
GRWD1
GTF2IRD2
GTF2IRD2B
MICU2
P2RX4
ARHGEF12
BCAT1
MARK1
SMIM20
CHD8
CCN2
NEK2
SPPL2A
INTS10
MMAA
EEF1E1
USP12
PSMA7
ATP9A
CEP41
SUPT3H
CCDC169-SOHLH2
CCDC169
ZNF391
RTRAF
COA1
CFAP46
SLC9A1
CAMLG
RTL10
GNB1L
ZFAND6
ANAPC15
APPL2
STON2
PRSS22
ATF6
SPDYE10P
C15orf61
SPDYE14
CASTOR2
KIF5B
TBC1D1
CNOT2
OPA1
TTK
LSM8
KRTAP3-1
BAMBI
MED27
ELMOD1
LNPEP
TBC1D5
SHOC2
BBIP1
CTXN2
DCLK1
IGFBP2
ZSWIM7
TTC19
SLC7A11
CRPPA
ETAA1
TMEM144
HSPE1-MOB4
HSPE1
HSPD1
DTNB
LIMA1
AGPAT5
ADIPOR2
SIK3
VPS13B
ZFP64
TYW1B
TXNDC11
ACVR1
FAM162A
CCDC58
EIF5
CREB5
CCNG2
STX18
C16orf95
UQCRC2
RAB11FIP2
DAZAP1
NAT10
FAM168B
SLC44A2
TRPC1
ZDHHC6
VTI1A
MEMO1
MTIF2
BCO2
PNPT1
SYDE2
HIC2
SLC40A1
DMBT1
SCAP
MTRF1L
SPECC1
POLD2
CFL2
AMZ2
FER
NFIB
RHOBTB3
GGH
DYNLRB1
GUF1
TFAP4
SPATA9
CELA1
ATF2
NMD3
MECOM
FSTL3
ANKRD18A
WDR75
ST8SIA6
BEND4
PTH2R
RAPGEF2
TJP2
ROCK2
NUP42
SETD9
NUTM2E
SPTSSB
CASC3
MRPL39
ATG101
IMPA1
TFEC
AXDND1
PARL
ZNF292
CCNC
UROS
BCCIP
CAPS2
PRKACB
TCTEX1D1
NPFFR2
PRSS47
TFAM
VWA8
ZNF331
NUDT15
TEFM
ANKRD36C
TDRD3
RIOK3
RPRM
GTPBP8
GUCY1A2
STAT2
ELMOD2
AKT3
KMT5A
MAP3K2
AS3MT
DPY19L4
BIRC6
ATXN2L
PDE4DIP
PDE7A
LINC02210-CRHR1
DSN1
TYW3
CRYZ
ACP3
ZBTB45
CGGBP1
STRADA
WDHD1
SOCS4
C3orf38
COQ10B
CSTF2T
XPA
B9D1
ZNF148
CTNNB1
LEO1
PIP4K2B
N4BP2
PLS1
CDK8
SMARCAD1
HNRNPA1L2
MRE11
ANKRD49
MTBP
MRPL13
KCNH1
MRPL38
PPP1R13B
SKIDA1
SGK3
ATXN7L2
MRPS36
ATP5F1E
IFT88
AGPS
DDX59
ZNF675
CIPC
PHF8
EFCAB2
USP30
RNF220
SND1
CDH12
SLC25A46
SULT1A1
PKIA
ANKRD20A1
LUZP2
C4orf36
PIKFYVE
BAZ1B
ZC3H6
LRRC37A3
SPSB2
ETNK1
SLC39A10
SEC24B
ARHGEF5
TATDN3
NSL1
REV3L
SIRT2
NFKBIB
KMT2D
SECISBP2
MACROD1
PATL1
AVEN
ZMYM4
PLEKHA6
MED23
C6orf136
NREP
RSPH3
CCNG1
OLA1
ZSCAN31
CPLANE1
MYEF2
SLC35A1
GPR137
TRIM37
INPP5A
TMEM132A
BAD
C12orf73
VPS13C
UIMC1
RBM43
HIBADH
RYBP
ZFP62
PTPN4
GCA
KLHL9
IFIH1
DCP1A
PFKM
PIGU
ZC3H15
APTX
DNAJA1
USP49
PLK2
RDX
ZGRF1
LARP7
MBIP
KMT5C
MAST2
SMN2
SMN1
EIF1
SESN1
AP3S1
CREBL2
SLC27A6
NIBAN1
UBE2D4
ZNF18
GBE1
MFSD8
ABHD18
CHD1L
PRKAB2
PDXDC1
FTCDNL1
NEDD1
HIF1A
KIAA1109
CKMT1B
PLBD1
GPD2
GCFC2
CEP135
YPEL1
PAN2
ATP6V0E2
PPP4R3A
ZNF891
ZNF10
RPL6
PTPN11
L3HYPDH
JKAMP
PDSS1
TMEM63B
MRPL14
DRAP1
C11orf68
WDR48
SCN11A
JRKL
CCDC82
UBA6
KCNT2
TENT2
EGF
SOX5
ASXL2
RNF138
DIPK1A
HNRNPLL
RUSC2
DNAAF2
ZSCAN12
MTMR10
SUPT7L
SLC4A1AP
CC2D2B
HMGB1
USPL1
MTMR2
SENP1
HEMK1
AFF1
RPAP2
GLMN
FBXL12
SBNO2
SLC7A6OS
PRMT7
UBE2J1
CSRNP2
LAMTOR5
XRN2
USP45