ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX17639400 | NB-4
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◣ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

MTRNR2L8
ZGPAT
ARFRP1
MTRNR2L2
FLOT1
RBKS
BABAM2
LAPTM5
SKIL
SMIM20
KAT6B
RASGRP2
PCNA
CDS2
UPF3A
ZNF746
ICAM1
NR2C2
C16orf54
ARHGEF18
ARHGAP4
MRPS31
KANSL3
ZNF740
CSAD
NDUFA4
RARG
NCOA4
SMG6
KEAP1
PPCDC
AGTRAP
SERTAD2
SCAP
MTG1
SRCAP
LOC730183
HUS1
ANPEP
GDPGP1
CIB1
NR2C1
CEBPE
CASP9
TXNDC11
USP37
CNOT9
LPCAT3
MDM2
PARP2
PICALM
MAP3K8
DENND6A
DZIP3
CIP2A
MBD6
DNAJB2
COX5A
CTCF
PLIN2
EMP3
TRPM2
MTRF1L
YARS1
S100PBP
MRPL4
ZNF217
SOD2
WTAP
PPP3CB
SREBF1
RASSF2
SEC14L1
SLC35C1
MED9
MCRIP1
RAB3D
TYROBP
MACROH2A1
MPC1
KAZALD1
SEPTIN2
HDLBP
CD38
TMEM182
CXCR4
ANKRD18B
KMT5A
STX18
ING1
ARL4A
MAP1LC3B2
MFN2
ACACA
MAP2K3
EPM2A
NCOA2
BHLHE40
GFOD1
RPS6KA1
RARB
CALR
CDKN2D
IPPK
FAR2
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
NUTF2
CENPT
ADAM17
NIBAN3
NOL4L
IDH1
PRELID3B
CNOT2
HPCAL1
BAZ1B
NAMPT
MTHFR
SPATA1
CLCN6
GNG5
PDSS2
GPATCH8
RAP1GAP2
SLC25A19
SH2B3
BOLA3
SH2B1
CYB5R4
JUND
RMND5A
RNF149
DNAJB1
WT1
NRL
DCAF11
MYADM
MYO18A
MAPK8
BIN2
CDKN2AIP
UBE2R2
LYL1
SH3BP2
SLC11A2
TCTEX1D4
BTBD19
RNASEH1
PIK3AP1
TAGLN2
ICAM3
PA2G4
NEURL2
CTSA
TBL1XR1
CTBP2
ANXA11
NKG7
UPP1
VPS37C
RNF168
KRAS
ADIPOR2
SDE2
PHF19
ICAM4
AZIN1
GPR108
SLC4A2
CDK5
BAG2
AP1B1
CCDC102A
ZCCHC24
SMARCD2
PGLS
SLC25A35
KLLN
LOC114841035
FKBP2
PTEN
DDX5
CEP95
PDCD4
SLC20A1
LIPA
BCAP29
MINDY2
ZC3H6
POM121
CYP4V2
GSPT1
QPRT
CENPH
ARSG
BCAT1
WDR12
CARF
MRPL2
KLC4
ZSWIM9
LIG1
FAM200B
LMBR1
ROM1
EML3
SPHK2
RPL18
AP2S1
STING1
DHX35
ZNF114
PXYLP1
PIGO
ZNF335
RABL2B
RABL2A
RWDD1
PSMD1
MAPKAPK5
NME6
NUP85
CACTIN
SUDS3
POLR3F
DZANK1
EFTUD2
CCDC103
NVL
IPO13
VDAC2
DYNC1LI2
GOSR2
HSPA9
VTI1B
PSMG2
CEP76
NUP205
MRPS7
GGA3
POLR2E
HADHB
HADHA
RPL21
NCLN
EXOSC5
BCKDHA
C19orf48
TBCK
AIMP1
BLCAP
DCTN1
REXO1
TSNAX
SLC35B1
ATP5MG
STAM
TSN
STAM2
SEC61B
FARSB
PSMD12
LYRM4
FARS2
SRD5A1
NSUN2
PNO1
PAK1IP1
C6orf52
RBBP5
PES1
UPF2
SKP1
IRGQ
ZNF576
COX7A2L
CAPRIN1
ISCU
ACTR10
ZRANB2
TTC8
SUPV3L1
DPH6
IQCG
SART3
GOLGA5
VARS1
PI4KB
TMED1
RPL35A
RPS23
ATP6AP1L
RPS12
SMC2
MRPS5
ANAPC7
C17orf80
RABGGTB
SELENOF
HS2ST1
FAM104A
USP1
MRPL11
PDAP1
BUD31
PCBP1
EIF4ENIF1
UFM1
ADK
XPNPEP3
ST13
RPS27A
CLHC1
AP3M1
ICE1
APOM
PROSER1
NHLRC3
BAG6
WDR74
COMMD1
CCT4
SF3B3
COG4
OSGEP
APEX1
RPS29
PAF1
MED29
TM9SF1
NEUROG2
DDX39B
LRR1
NEUROG3
PIN4
NDUFA10
OAZ3
SUCLG1
PTGES2
UBE2I
HES1
PDE12
ARHGAP11A-SCG5
ARHGAP11A
TAF9
RAD17
AK6
STK36
RNF25
MRTO4
EMC1
SPATC1L
VEZT
FGD6
RPL7
RDH10
SEC11C
EIF2S3
GADD45GIP1
BICRA
CDC73
PMAIP1
C16orf91
HOXA4
RPN1
GORAB
NDUFS7
GTF3C4
DDX31
NEUROG1
ATOH1
CNPY2
CCDC200
SP2
RARA
DHRS3
BNIP3
ZNF383
BBS9
IGFBP2
MRPL38
GLT8D1
PDHX
APIP
TTI2
PCBD2
HOXA2
ANKLE2
DNM2
TPRA1
NBAS
ID2
TEPSIN
NDUFAF8
P4HB
ALKBH5
RPS10-NUDT3
RPS10
AXDND1
TBX2
CLGN
ZFHX3
DOLPP1
RAB5B
CAMTA1
DONSON
HSPA1B
NPAS4
ANK2
TLE4
ATF6
SP5
PDHB
CBFA2T2
OTUD7B
KATNB1
PANK2
RBPJ
FRA10AC1
CCDC174
PGK1
DPP9
PRUNE2
GATA4
MTMR4
DUSP6
FOXP1
ZNF687
XKR7
TBX3
ARRDC4
KIF21B
SRSF11
ALKBH7
ST18
RFX1
LRRC40
POLDIP3
HOXA3
NFKBIA
STIP1
NR2F1
OSBP
TLE2
SPCS1
INSM1
ZNF608
PDE4D
IQSEC3
ZFHX4
ATP5F1B
GPCPD1
RNF207
CBX3
MRPL34
SLC45A4
RUNX1T1
PPP6R3
SP1
CS
MALRD1
ANKHD1-EIF4EBP3
ANKHD1
EIF2AK3
HEXIM2
SNX16
GRSF1
NELFA
CRLS1
GADD45G
TLE6
KNL1
HNRNPD
KCNAB2
POLG
TMEM70
MLEC
TNFRSF19
SHF
SACM1L
MYRIP
METTL11B
MTF2
PKN2
CCDC43
PRMT5
KDM3A
DAGLB
EIF3D
RBBP7
NLK
FBXO31
ANKRD28
SLC30A4
ZNF503
SERPINE1
RAB37
RTN4
HNMT
EIF4H
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
NKD1
HMGB1
ARHGEF10L
ILF2
GATD3B
GATD3A
CEP41
RHBDD1
PRKACA
TDRKH
DIABLO
CBX5
TMEM101
KIAA0319
EVI5L
ARID4A
LUC7L2
TOP2A
ID1
PNKD
G3BP1
HTR5A
MBD2
ZNF76
BFSP1
KMT2A
PRDM10
TRIB1
AIFM2
TIGD1
EIF4E2
USP42
DUSP9
NRSN2
IQGAP2
GOT1
NEDD9
USPL1
TMEM60
PHTF2
INAFM2
PIKFYVE
HES3
HMGCS1
IRF9
CCDC88A
TUBGCP3
ACYP1
B4GAT1
ROGDI
FAM107B
CHD8
EIF1B
CPSF4L
NHLRC1
HNRNPA2B1
CMSS1
ADM
EXOSC4
YTHDF2
ANKS4B
STX16
LCK
TSPAN4
TCHP
MFSD11
POLR3E
PARK7
NANP
NEO1
PRDM12
HSP90B1
PCGF1
PCTP
FAAP24
CEP89
ANP32E
MPND
LTBR
ZC2HC1C
SEPTIN9
DLC1
TUBB4B
UBE2C
MVD
POLR2J3
GBA
BRWD1
MEPCE
CLCN3
HNRNPC
TRAF4
ATP23
TBL1X
MPV17L2
CELSR3
ADAP1
TANK
CASC3
CALM2
LBX2
ARHGAP24
CCDC107
HSPE1-MOB4
HSPE1
HSPD1
CDC42EP3
PRR14
CLK1
H4C12
GLRX5
TMEM94
HNRNPUL1
IRS1
DUSP12
ARNTL
SNX3
ZCWPW1
HOXB4
ZNF148
LRRC59
METTL25
CCDC59
LPIN1
TCF4
ZCCHC3
STAT3
FMC1-LUC7L2
FMC1
DDX1
SHB
NCBP2AS2
NCBP2
ABHD2
TMPPE
GLB1
NCOA7
HECTD4
TCERG1
SLC9A1
ZBTB18
CSRNP1
KPNB1
CYCS
C8orf37
JUP
STARD4
FILIP1L
KIAA0319L
NRSN1
LIN28A
HOXC5
HIBADH
ARIH2
CMTR1
TOMM40
FAM227B
DTWD1
SERPINB9
MSMO1
ACVR1
GGT1
FAM72D
RSRC1
NBPF1
CCNL1
WBP1L
PEX14
NKIRAS1
NUF2
RAB11A
SLX1B
SLX1A
BOLA2B
ELOVL6
LRCH4
FBXO24
VOPP1
FBXO41
TRIP4
PXMP4
ETV4
LNPEP
NAT8
MFSD6
ARID5A
PSMD3
SRSF2
NFE2
DCP1A
KAT7
MTRNR2L9
HEBP2
DSCAML1
ACTL6A
ELF1
CCPG1
C15orf65
ZNF219
HBP1
FASTKD1
USP3
PSMD9
HPD
DYNLT1
SKA2
PRR11
POLR3A
ATXN1L
RASSF5
LONRF3
RGS12
HOXC6
GFRA3
CPVL
RAI14
MAF1
TMEM9
HMGN4
EEF1AKNMT
SLC7A5
ARHGEF1
CDCA7L
MANF
HSPA5
SKIV2L
NELFE
BOLA2
KHSRP
REC8
CLTC
OTUD4
PKDCC
HINT2
GSTA4
AP3M2
MEF2C
IL6ST
C3
TBRG4
TLN1
CREB3
SNRPF
ARMC1
L1CAM
CIC
PLEKHA6
HNRNPL
GLRA1
LOC100289561
HOXC4
TRIM44
RAD50
LDLR
CLDN2
PGP
SLCO4C1
TRIM41
TXNRD1
CABIN1
TOP2B
CPLX2
CNPY3
PEX3
ADAT2
BHLHA15
CHN2
POR
OPA1
TMEM86A
NR1D2
UBAP2
STT3A
STK38
IARS1
AOPEP
RFESD
MAP11
USP15
FAM72C
ADRM1
TIGD2
YIF1A
H6PD
PSMF1
SPSB3
NUBP2
H4C8
PTGES3
DIAPH1
SPIN1
RPS24
RBM15
BRD2
CBWD5
ADGRG3
CYBA
IQCH
AAGAB
TMEM259
SLC24A1
BAIAP2
GTF2H2
AKIRIN1
PARL
SPECC1
KDM1A
NBN
KMT5C
CYP1A1
C11orf24
WBP4
RPS6KB2
NBEAL2
NADK
H4C14
DIAPH3
KAT6A
DYNLL1
C1RL
NCDN
BOLA2-SMG1P6
IBTK
MAPKAPK3
CISH
GBE1
MAP3K3
ZBTB45
FGR
TMBIM6
H2AZ2
DENND4B
SEMA5B
TBC1D8
SIRT4
SPAG7
FAM162A
CCDC58
ZNF292
TMEM222
VIRMA
SLC35E3
CNOT1
E2F3
TMCO6
GRHL3
MTHFD1L
MFSD8
ABHD18
CEP70
FAM72A
SH3TC1
TLE3
CBWD3
HESX1
NIBAN2
MAN2C1
ACAT2
PKM
ZNF77
PWWP2A
LEKR1
WNT10B
PIWIL2
WDR25
WARS1
MAD2L1BP
ZFYVE21
XRCC3
DGKZ
AKAP1
SLC35E2A
CLIC4
GATAD2A
DRAP1
C11orf68
PTP4A2
AGT
TMX2
PEX2
MED19
OTX1
EIF4A3
GRWD1
LFNG
C12orf65
SRPRA
TRIAP1
PMPCB
BCAR3
MED23
KLF17
NFE2L1
FGFRL1
TMEM217
TBC1D22B
RNF139
THUMPD3
GFER
PACSIN2
PDK2
MTMR12
MTERF4
H2AX
H4C3
MSANTD4
AK2
ZDHHC4
HNRNPA1
DDX3X
RNF34
MAPKBP1
TOB2
RPS8
MRPS23
NFE2L2
TBCCD1
IFRD2
MAEA
STMN3
C6orf89
SERPINB6
SLC33A1
AURKAIP1
UBL7
KATNA1
VANGL2
MLLT11
FAM110A
CDC42SE1
TOM1L2
MIA2
DRC3
DUS1L
CLK2
PPP1R13B
CX3CL1
FGA
GTF2H2C_2
GTF2H2C
TRAF2
ZNF341
ARFGAP2
RECQL
GOLT1B
C6orf136
PCK1
ASB1
TEDC1
STK11
HAL
NOTCH2
SLC51B
TRABD
TOP1MT
SLC25A45
SLC39A13
CIPC
UGP2
IL27
LEMD2
DENND2D
MCU
BZW2
LRRC45
CENPX
CTNNB1
PPIB
MGST2
H4C15
RBM25
NREP
PLEKHA7
RXRA
TRMT6
MRPS15
MCM8
MVK
HERC5
PSMB3
R3HCC1
RCL1
MAPRE2
BDH1
FDFT1
NME1
FNTA
TLX2
TIMM44
HECTD3