ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX148964 | P493-6
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◣ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

KIF5C
WDR74
STX5
MAMDC2
TRIM48
PMF1-BGLAP
PMF1
MTRNR2L8
NGB
DUX4
C1orf198
MTRNR2L1
ACSL3
MTRNR2L2
MSH3
DHFR
MTRNR2L9
RGPD1
RGPD2
HSD17B4
UNC93B1
ALDH3B1
TNKS1BP1
SCML1
ZMIZ2
MTRNR2L6
CDH11
TMEM216
EMILIN2
PTPRN2
MYC
H2BC5
H1-4
H4C14
H3C15
H3C14
H4C15
ZBTB4
SLC35G6
POLR2A
PRKAG1
SPATC1L
H4C12
H4C11
H2BC14
H2AC14
H2BC15
H2AC15
H4C9
H2BC11
H2AC11
EAPP
TRAPPC4
RPS25
CCDC66
ZNF516
CD74
DDX23
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
UNK
H3-3B
MTF2
NAA80
IFRD2
HYAL3
TBL3
RPS2
RNF151
HEXIM2
LAMP1
CCNL1
CTNNB1
NOXO1
CLTC
ZC3H6
FEM1A
DSTYK
ARL4D
FRG2C
CDCA3
PDE6D
COPS7B
CHPF2
ABCF2-H2BE1
ABCF2
CALR3
C19orf44
EIF2D
STX18
TMEM41A
TIMM21
FBXO15
LAT
NCBP2AS2
NCBP2
MRPL21
IGHMBP2
BRWD1
CKS2
UCKL1
SECISBP2
SPNS1
DCP1A
CALM3
TSNAXIP1
ATAD2
RANBP10
UBC
KMT5B
PPP5D1
PPRC1
NOTCH2
SOD2
PAFAH2
GSPT1
TMEM11
LOC102724770
DGCR6
POLR2J3
WDR53
FBXO45
HMGB1
NPRL2
WTAP
TMEM199
SEBOX
POLDIP2
GTF3C5
HDGF
TMEM115
CYB561D2
TMEM222
ARHGAP35
AP2S1
GATB
FOXJ3
HEXA
CALR
CLPB
RASSF1
RBL1
CALM1
OPA1
DOHH
SSNA1
ANAPC2
NDUFS7
TOMM22
CCDC88A
TSN
MRM3
GLOD4
SLC39A1
CREB3L4
NMNAT1
LZIC
SEC13
CYCS
TCF3
ZSCAN22
MRTO4
EMC1
LRP6
SCGB1C2
SCGB1C1
ODF3
UNKL
AURKAIP1
ORMDL3
GSDMB
TIMM22
CALM2
ZNF517
ZNF34
RPL8
COPS8
FZR1
KBTBD7
FAM180B
CCDC77
H2AC19
H2AC18
UBB
NDUFS3
KBTBD4
NUP214
NOP14
GRK4
TRIP4
PCLAF
STX16
GPBAR1
BTRC
KMT2D
SMN2
SMN1
CNOT1
C16orf91
PEMT
TNFAIP8L2-SCNM1
TNFAIP8L2
TMEM262
CFAP410
B4GALNT3
CRTC2
RHEBL1
ST3GAL2
TESK2
MMACHC
ZNF337
MED23
SCAF1
RRAS
POMZP3
SYMPK
FOXA3
CHMP4B
CTDP1
KPNB1
IPO11
DIMT1
BOD1
MRPL24
MTERF4
RPS3
ZNF513
SNX17
EIF2B4
WASHC2C
PNKD
PHB
TSSC4
PSMD3
IST1
PRCC
PEX3
ADAT2
AHCYL2
ZBTB45
RAD23A
RPS20
AAMP
UBE2B
CDKL3
DDIT4
ING3
TOB2
TCEA2
PA2G4
GTF2H3
EIF2B1
DEXI
CLEC16A
ADPGK
HTRA2
DQX1
RPL36
MICOS13
HSD11B1L
GSTA4
PHIP
ZFAND2A
ZNF212
WASHC2A
FRA10AC1
SMPD3
PEX26
NAGPA
THRAP3
KCTD9
CDCA2
MAF1
CYC1
DYRK1B
ARHGEF12
UBE2T
PPP1R12B
NUF2
ZMYND10
RPL22
RNF207
KBTBD6
EIF4A2
TAF12
RPS6KB2
PTPRCAP
KDM5A
NUDCD1
TSC1
GFI1B
USP30
TTC13
ARV1
PERCC1
PARL
ZNF789
TRIAP1
COX6A1
ATP5MF-PTCD1
ATP5MF
OSCAR
NDUFA3
RPL18A
PKM
MED15
H2AX
DPAGT1
ZNF721
PIGG
FAM207A
UBE2D3
MCM7
AP4M1
ZCCHC4
VARS2
GTF2H4
NXF1
SCNM1
LYSMD1
RPS28
NDUFA7
ATG14
SLC27A5
ZKSCAN2
WDR97
TMEM127
CIAO1
OAZ3
KCTD5
USPL1
TMOD4
INVS
ERP44
MAD2L1BP
GTPBP2
H2BC21
H2AC21
H2AC20
SLC9A1
C8orf33
MRPL20
CCNL2
SCRIB
RPIA
PANK4
HES5
ZNF444
PTPN6
C12orf57
ZNF718
FAM53C
CDC25C
GPAM
PPP1R12C
GABARAP
DNAJC11
RPS26
WDPCP
MDH1
RNASEH2C
KAT5
DUS2
DPEP2NB
DDX28
FUS
C1orf159
MAIP1
FARSA
DIP2A
TRAPPC3
MAP7D1
KDM4B
TMTC3
CEP290
ZW10
CLDN25
TNFAIP1
IFT20
TMEM79
SMG5
MFN2
CYP51A1
CCAR2
C8orf58
SLC35B4
CLP1
ZNF595
ZNF384
RANGAP1
UBR2
ATXN2L
MRPS16
DNAJC9
MAPKAPK5
BRIX1
MRPS15
ALKBH3
MXD4
RBM42
SRSF11
INTS9
HMBOX1
CORO7-PAM16
CORO7
DNAJA3
ZC3H10
RPL41
ADNP
LRRC29
ZNF56
NUP153
PEX14
UBQLN1
WBP1
NME1
TBRG4
PGBD4
EMC7
RPS5
PCID2
KAT7
CUL4A
RLF
BANP
C6orf47
APOM
DFFA
PSMF1
PINX1
INO80B
ABRAXAS2
VCP
FANCG
MRI1
C19orf53
EEF1AKMT2
PSMD11
CHD2
COMMD1
FBXW11
MRPS35
BOD1L1
MDM4
SLC25A19
UBE2Q1
CHRNB2
NKIRAS1
NMT1
DCAKD
UBQLN4
RAB25
LAMTOR2
HMGCL
CCT4
GHITM
TOR1AIP2
TOR1AIP1
TAF5
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
ZFYVE1
MANF
NSFL1C
GID4
ATPAF2
CCDC146
STK25
NOC4L
DDX51
SPRYD4
PBLD
HNRNPH3
CLDN6
TRIP12
FBXO36
LRRC40
TMEM70
ELOC
RBM15B
DPP9
RIC8B
PRR5L
LUC7L
FAM234A
AP2M1
RPLP0
GCN1
VPS37A
CNOT7
SPATA25
NEURL2
CTSA
TTC33
DOLPP1
TMEM88
ENDOV
RPL15
PHF23
DVL2
CIC
SPTLC1
TEPSIN
NDUFAF8
ZGPAT
ARFRP1
DCAF10
SP2
SLC33A1
SEPTIN9
ZNF420
ZSWIM1
CDKN2C
PIGU
ZFYVE19
DNAJC17
AHCTF1
CHCHD1
ACOX3
NTAN1
COMMD9
FBF1
UCHL5
RO60
MRPL58
CSRNP2
SV2A
HNRNPAB
SUPT5H
RPS16
RCL1
CRBN
RBM6
IDH3B
TCF12
CANT1
EIF3F
RPL29
BIRC5
PYCR3
GFUS
DNAJB12
LETM1
STAU1
SUFU
ACTR1A
GDE1
CCP110
PHF12
LONP1
CATSPERD
HMBS
MTMR2
EMILIN1
MON1A
TFPT
PRPF31
HSP90AB1
RALBP1
TRMT44
SUPV3L1
SMARCAL1
PIK3R3
ARF4
MFSD11
HSP90B1
SNAPC3
SART1
COQ9
CIAPIN1
ZSWIM8
SSBP1
NDUFV1
ZFPL1
CDCA5
UBL7
COG2
DDX49
COPE
HSPA5
TMA7
CCDC51
ATRIP
GTF2I
PHF13
DDX1
P2RY11
DNM1L
PKLR
FDPS
FAM166A
JOSD2
ASPDH
RPL12
LRSAM1
CTU1
ARHGAP9
RCOR1
ZNF749
TRAF7
SNRNP70
MARS1
RAB5C
TSC2
NTHL1
WASHC5
NSMCE2
SNX1
CIAO2A
MYBL2
OST4
DCAF8
TOP3B
MRPL39
BOLA1
GABPB1
DCAF1
DESI2
SF3A3
STPG3
U2AF1L5
U2AF1
TMEM242
RAB26
TMED9
B4GALT7
CBWD5
WAPL
PNRC1
TMEM59
TCEANC2
RPS7
FBXL12
CAND1
PRSS22
METTL9
ODF3L2
MADCAM1
IP6K2
TNFRSF12A
THOC6
HCFC1R1
TRAK2
STRADB
CHCHD3
RWDD1
CBWD3
SOX6
C11orf58
PIK3IP1
B3GALNT2
ZFYVE28
NLK
TLE3
FBXO46
METTL25
CCDC59
VCPIP1
C8orf44-SGK3
CD68
ESYT1
POLR2E
ZFAT
CFAP99
PCNA
BICD2
TTC4
TMEM230
COX7C
SLC7A6OS
PRMT7
GPX4
PSMD2
MCU
METTL23
PDE4DIP
TEKT2
ADPRS
WDR87
SIPA1L3
TRMT61B
POLG
POLG2
DDX5
CEP95
PTEN
KLLN
SLC3A2
SKIV2L
NELFE
THYN1
ACAD8
ZNF500
SLC24A1
FAM228B
PABPC1
BCKDK
SRSF1
PRKACA
IPPK
SERBP1
USP48
NEK8
GUSB
SRSF2
TARBP2
MAP3K12
DPY19L4
ATF4
PIH1D1
ALDH16A1
RPS19
SMIM13
BRF2
SIRT2
NFKBIB
ZC3H3
PLEKHM3
SSR3
CAPN10
CMTR1
SLC4A2
CDK5
RPLP1
PSME3
BECN1
NPFF
FAM149B1
ECD
ZNF148
UBE3B
KCTD10
PSMD4
TIMM13
NDUFB5
MRPL47
SLX1B
SLX1A
CCDC90B
BOLA2B
BOLA2
ASIC3
SRRD
HPS4
RUVBL1
NOLC1
GFM1
KAT8
COQ7
NOP53
TRUB1
MYLK4
STAT1
MUS81
CFL1
TMEM217
TBC1D22B
SESN1
VIRMA
UBA52
H3C13
H2BC18
FRG2
CTF1
BCL7C
ASXL1
TACO1
COA6
EIF4A1
RFXANK
BORCS8-MEF2B
BORCS8
KDM4A
PCBP2
CDKN2AIPNL
FAF1
TMEM39A
POGLUT1
CFAP20
HAGH
FAHD1
COPS7A
BUB3
NDUFAB1
ZER1
LARS1
NDUFB10
SRP68
TFRC
KPTN
BMS1
KHK
REXO1
CACTIN
WBP2
SF3B2
GAL3ST3
PARK7
HMX2
PPAN-P2RY11
PPAN
ANGPTL6
SPRED1
RPL3L
WNK1
RPL23A
TLCD1
PHB2
EEF2
NDUFB8
HIF1AN
RAB34
RCOR3
CBWD6
SHC1
BUB1B
RAB13
YPEL4
XRRA1
SPCS2
PHAX
ALDH7A1
WRNIP1
ZACN
GALR2
SULT1A4
SULT1A3
USP15
ACTRT3
KMT2B
PTDSS2
ANO9
PI4K2A
MORN4
TSFM
EMP3
CCDC114
WDR25
WARS1
TMEM109
PRPF19
PALB2
DCTN5
CWC25
GPANK1
CSNK2B
ZNF518A
FBXO24
RANBP2
SUMF1
MRPS11
MRPL46
TDG
C12orf73
EEF1AKMT3
EEF1A1
ZNF225
GTF2H2C
GTF2H2C_2
TIGD6
HMGXB3
SNRPD3
GUCD1
C5orf51
UBN1
GLYR1
TEFM
XPOT
RPP30
LRCH4
SMIM12
RERE
PROCA1
MEIOSIN
OAZ1
DBNDD2
NOL10
CHCHD6
SEC11C
ZNF514
ZNF2
ZNF189
MRPL50
CEP350
CCDC150
EIF2S2
TATDN3
NSL1
RPL3
POLR3D
RTF2
SPHK2
RPL18
FBXO28
FAM83E
CDK8
VPS33A
C12orf43
FASTKD1
WDR4
NABP1
ZWILCH
SNAPC5
RPL4
PTBP1
NDUFS2
ADAMTS4
SELENOH
FAM156A
SEC61A1
ZNF451
L3MBTL2
NCDN
KIAA0319L
SUGP1
MAU2
PNKP
AKT1S1
SCRT1
DGAT1
SLC25A10
MRPL12
FAM156B
PEPD
INTS1
TMEM69
GPBP1L1
CCDC124
RAB1A
ZNF527
PANK3
SDE2
HIRIP3
MRPL3
GET3
C19orf48
ZNF805
AURKC
TOP2B
TOP3A
SMCR8
PPIA
SFSWAP
MRPL48
CNPY2
GPR15
CLDND1
IPO7
PCNP
CNIH4
CCDC86
PPP6C
COMMD2
CAPN15
RTTN
UBAC1
RASEF
TTBK1
GSC2
AP5Z1
STMN3
RTEL1
SNAP47
JMJD4
RPL6
PTPN11
HNRNPL
MRPS23
AKIRIN2
DBP
ABT1
GPAA1
EXOSC4
FANCD2
CNOT4
SPRYD3
CASC3
DDX46
ZNF133
CDK5RAP1
SRPRA
SCAMP4
ADAT3
TBC1D17
RPS3A
SCAMP3
FAM189B
TIMM50
MOGS
ATP5PO
TOR1A
BOLA2-SMG1P6
EIF1
ZNF335
CA11
FUT11
RAD54L2
MAPK11