ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX535453 | A-375
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◣ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

WDR74
STX5
EAPP
PHC2
EXD1
CHP1
LIMK1
SEMA6A
H4C14
H3C15
H3C14
H2AC19
H2AC18
DUX4
STX16
DPY19L4
H4C15
FAM98B
KIF5C
STX18
MTRNR2L2
MSH3
DHFR
MRPL21
IGHMBP2
H4C12
H4C11
H2BC15
H2AC15
DDIT4
SAR1B
GSTA4
NUF2
IST1
MAMDC2
H2BC14
H2AC14
AAR2
GBA
NR1H3
ACP2
TAF12
TUBGCP3
FRA10AC1
MTRNR2L1
ZNF207
C17orf75
SMARCD2
NME1
SLC44A1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
UCHL5
RO60
H3C13
H2BC18
GALK2
COPS2
DMAP1
TRPV2
H3C4
H2AC7
H4C5
H2BC7
TPRKB
SLC20A1
PHLDA1
SF3A3
RAD54L2
FEM1B
RRP15
SLC9A1
RCAN1
GTF3C3
C2orf66
JRK
H1-2
RARS1
RASSF5
H3C3
H2BC3
DSTYK
TBC1D19
RPL37
CARD6
DCAF10
SNAP47
JMJD4
VWA8
RBBP5
ATR
TATDN3
NSL1
TMEM107
EIF1AD
CST6
BANF1
NPAS4
H4C4
H2BC6
S100A14
S100A16
MRPL16
H2BC5
H1-4
CDKN2AIPNL
RPS7
NAA80
IFRD2
HYAL3
RPTOR
IER3
FLOT1
EIF2D
USP30
STX3
TOP3B
NDUFB7
NOTCH2
SELENOH
RAB5IF
MAN2C1
ACOT7
BCL9
WDR31
BSPRY
CDK5RAP1
DHRS3
KMT2C
TRIB3
ZSCAN30
FCGR2A
PCID2
CUL4A
SIRT4
MTRNR2L8
TDG
C12orf73
NDUFA12
SPOP
HPCAL1
BFSP1
DCP1A
GTF2H2C
GTF2H2C_2
OGT
STAT3
YWHAE
DRG2
SNRPB2
NTSR1
CLUAP1
C16orf90
H2BC21
H2AC21
H2AC20
PDE4DIP
SSBP1
TACO1
SPRY4
TNFAIP8L2-SCNM1
TNFAIP8L2
SCNM1
LYSMD1
TMOD4
VIRMA
COMMD2
TEFM
RPS6
WDR36
KLHL20
HEXA
TRIP4
PCLAF
TRIAP1
COX6A1
EIF1
C11orf49
BNIP1
S100A2
METTL9
LRRC47
E2F6
CT45A10
LAMP1
SLC24A1
PEX3
ADAT2
MTF2
NDUFS3
KBTBD4
FAM180B
YARS1
S100PBP
CSRNP1
JUNB
IRS2
UCKL1
WDR24
STUB1
JMJD8
HMGB1
ZNF212
USPL1
EEF1A1
VANGL2
LARS2
ST3GAL2
TEKT2
ADPRS
H4C2
H3C2
H2AC4
TMA16
KANSL3
FER1L5
PROB1
SPATA24
SLC27A1
ZNFX1
COL23A1
MRPL44
INTS12
GSTCD
SPATA25
NEURL2
CTSA
ZSWIM1
P2RY11
MANBAL
EIF3G
ADPRHL1
STAT6
WNK4
VPS25
TM9SF1
IPO4
MRPS23
FBXW2
AP3B1
PDE6A
GTF2H2
UNG
ALKBH2
CCNL1
TMEM101
PARP16
TMEM256
NLGN2
CHD2
PSMF1
RTN4
GPRC5A
IFI16
PYDC5
DPY19L3
GSTP1
WWP2
TSPYL5
ZNF513
SNX17
EIF2B4
PLEKHM3
AP5S1
NECAP2
PYGB
CRTC1
ALG10B
KIF2C
GAB2
CD109
CD22
ADNP
MRPL3
RPL32
DNAJC24
DCDC1
DMXL1
DPP9
GUSB
ZCCHC24
IL24
NDUFS7
NOC4L
DDX51
TTPAL
VWA5A
TMEM242
ZNF391
AGMO
TMEM262
TOR1AIP2
TOR1AIP1
SLC3A2
CTSC
DDX1
RTF2
DNAJC25-GNG10
DNAJC25
DMAC1
GGNBP2
TBL3
RPS2
RNF151
NOXO1
HTR5A
S1PR2
PAFAH2
ARHGEF12
WDR11
NFXL1
H4C6
H1-3
H4C7
H3C7
SNAI1
SLC50A1
NDUFC2-KCTD14
NDUFC2
EFNA1
RPS5
SSBP2
STMN3
RTEL1
RBM28
PRRC2B
SREK1IP1
CWC27
SNRPB
ATF3
ARIH1
ZC3H6
TRUB2
COQ4
ACBD6
H3C6
DDX23
TVP23B
PMPCA
ENTR1
NCBP3
NDUFB10
RPL3L
RCOR3
SIT1
RAB18
KIAA0895L
EXOC3L1
E2F4
CCDC107
ARHGEF39
ELMO3
H3-2
ITGA3
DIAPH1
PUS7
RINT1
INO80C
POGZ
DRAP1
C11orf68
MNAT1
ANKRD18B
KBTBD6
CCNC
TEX46
KDM1A
IQSEC3
INTS1
CHD1L
PRKAB2
COX16
IL21R
KCNMA1
TESK1
RAP1GAP
SH3GL1
CHAF1A
SRFBP1
CCND1
AVEN
CPLX2
SCGB1C2
SCGB1C1
ODF3
ZBTB45
SLC27A5
ALG10
EDC4
MTERF1
ODC1
ZMPSTE24
FZD1
MUS81
CFL1
ZSCAN25
PRKCE
DUSP7
SEC16B
AURKAIP1
COG2
TPR
ODR4
RBM45
PDE11A
TRIB1
ZNF827
TUBB1
TTC4
STAT1
FAM227B
DTWD1
RPS8
SLC25A51
GMEB2
RACK1
RILP
INTS5
GANAB
DPH7
UFSP1
ACHE
SERPINA3
CASC3
C10orf88
PRADC1
CCT7
RPL26
KRBA2
RGPD1
RGPD2
UQCC1
KNL1
B3GNT7
ANP32E
UCN2
PFKFB4
PRRG2
LRRC37A3
NOSIP
ADAMTS9
CT45A7
CT45A6
CT45A3
SLC33A1
PSMD6
GOSR1
ATXN2
ZSCAN10
ZNF205
TRPC4AP
OTUD7B
CSNK1D
MUC3A
LOC283710
NOB1
NOC3L
PIP5KL1
DPM2
METTL15
KIF18A
HEXIM2
KMT2D
RHEBL1
ZNF789
ATP5MF-PTCD1
ATP5MF
CDC73
MACC1
SDC4
TTC33
CCDC86
POLDIP3
TRIM65
MRPL38
THAP5
DNAJB9
SRA1
SLC35A4
APBB3
H4C3
H1-6
EIF4EBP3
RNF10
COQ5
WWOX
NFATC2
FAM133B
DUS1L
RRN3
TMEM190
TMEM238
RPL28
BHLHE40
H1-0
GCAT
SH2B3
MTAP
ETV1
GTF2I
SRSF6
TIGD1
EIF4E2
DHX8
ZNF106
SNAP23
CPPED1
ILVBL
GRAP2
RPS6KA1
ZNF253
ORMDL3
GSDMB
BANP
RUVBL1
SLC35A3
ZC3HC1
CHI3L2
LGI4
FXYD7
FXYD1
MED23
PTPN6
C12orf57
BOD1L1
NEK8
RFXANK
BORCS8-MEF2B
BORCS8
RPL23A
TLCD1
RAB34
PROCA1
NCOA3
PPP4R3B
MTA2
TUT1
VMO1
PSMB6
GLTPD2
ZBTB37
RCC1
NSUN4
MTHFS
WWTR1
MRPL58
RAB13
RPS27
BICD1
ATF6
SNTB1
SOX10
C3orf49
DUS2
DPEP2NB
DDX28
TTI2
ANKRD40
RCC1L
TAF1C
ADAD2
BAGE5
BAGE4
BAGE3
BAGE
PTPRH
ZNF554
ZNF830
CCT6B
MRPS14
BRD2
NBPF1
RPL11
SLC23A3
NHEJ1
PLD4
EXTL1
TMEM40
H2AX
DPAGT1
HMBS
RPS14
LSM8
TP53BP2
ZSCAN22
SUPT5H
RPS16
RPL29
RPS3A
ITGB3BP
EFCAB7
FRG1
LRRC37B
FXYD3
FAM90A1
C7orf61
TRIM60
NMNAT1
LZIC
RPL13
SNRPE
USP2
TEX9
INPP5F
RFX7
TNFSF14
FUS
DDX19B
AARS1
CFAP298-TCP10L
CFAP298
RNF216
ARID1A
REX1BD
NREP
NEK6
SPIN2B
CCDC88A
TMEM167B
SNX19
LDAH
EXD2
AP4E1
RPL7
RDH10
NAA20
HOOK2
TAF13
PCOLCE
MOSPD3
H2BC8
H2AC8
AK3
GPR176
CFAP20DC
CALR3
C19orf44
UNKL
C16orf91
PKM
WNK1
TRA2B
CAAP1
PARP4
TRIM48
ZNF708
EMC3
SEC13
RFX3
NUPR2
CHCHD2
SLC26A2
MFF
SDHAF3
YJU2
MYBPC3
KCTD3
ABHD12
TRAF1
SRGAP2B
SRGAP2C
EIF4A2
ZC3H10
RPL41
SART1
ZER1
NBN
MBTPS2
ANAPC5
THOC5
RAF1
HNRNPA1L2
TENT4A
CYP2E1
PDE6D
COPS7B
LMNA
NDRG1
PBK
TBL1X
CCN5
ZCCHC4
C8orf33
TARBP2
MAP3K12
MRPL48
AARS2
LRRC59
HNRNPH1
OSBPL11
MRM3
GLOD4
WBP1
INO80B
SCAMP3
FAM189B
RBM14-RBM4
RBM14
TRIM46
KRTCAP2
MKRN1
ITPKC
COQ8B
CERS2
ANXA9
TFAP2B
LSM5
AVL9
SPDYE14
SPDYE10P
POLR3B
VPS72
PIP5K1A
NFE2L2
RMDN2
PPP1R1B
CARD9
DNLZ
GPSM1
BCL3
SYT5
H3C10
H2BC13
H2AC13
LYPLAL1
PLEKHG5
WASHC5
NSMCE2
MRPL39
FAM228B
TP53I3
SF3B6
RPS11
RPL13A
LDHA
SURF2
SURF1
RPL7A
MED22
ZNF791
ZNF490
SLC36A1
ABR
EPHA3
B4GALNT3
VPS33A
FANCD2
MTR
POLR2J
ERMARD
PCOTH
MIPEP
C1QTNF9B
GLIPR1L1
CAPS2
STEAP1B
ANKH
NPRL2
TMEM115
CYB561D2
CWC25
SEC61A1
UQCC3
LBHD1
MRPL40
HIRA
RANBP6
KIAA2026
ZNF564
VPS45
MARCHF7
NDUFAF5
ESF1
SCNN1A
LTBR
CSKMT
C11orf98
LAMTOR5
C16orf72
COIL
ZNF443
DEF8
VIM
HOXB3
HOXB4
HOXB5
RFFL
CFAP45
CDCA3
POLR2J3
DNM1L
GTF2IRD2
GTF2IRD2B
UTP3
H4C9
MTX2
SMG8
H2BC12
H2AC12
CDC16
EPHB4
RNF213
MEOX2
ZNF56
HPS6
ARMH3
REXO4
ADAMTS13
ZNF358
MCOLN1
LIG4
ABHD13
CRB1
APH1B
NT5DC4
TAF5
TOMM20
ZNF45
H3C8
H2BC10
TMEM88B
VWA1
LTBP1
ALLC
ART4
CARD17
PARP2
CCNB1IP1
PKIG
ZBTB40
LONP2
ABCC11
YBX3
SERINC3
EML2
MBNL2
LOC100509620
SURF6
PSMB4
STMP1
TPK1
RBM17
TTC26
PNPO
STN1
USP4
DCUN1D5
MAPRE2
COL16A1
ACTBL2
CDH19
BOD1
LTA4H
FBXO38
TUBA1C
ZNF581
ZNF580
NACA
LRP6
RPL5
TOMM34
STK4
RBM39
BBS1
KDSR
ELAVL3
PLPP4
CALM2
ZNF337
POLG
ELOB
KDM6B
ZNF76
PRSS33
WIZ
CHD1
CEP120
ATAD2B
SH3TC2
NHLH1
UNK
H3-3B
ID1
TAF3
MCL1
TARS2
FAM78B
POLG2
DDX5
CEP95
UBXN1
RPS21
SAMD10
HEMK1
C3orf18
TAGLN2
PRPF6
KMT2E
SRSF5
TIMMDC1
TMEM170A
IPP
PSMB3
PCGF2
EPB41
ZNF561
IL6R
RASA3
TMCC2
XKR7
PLA2G4C
CACNB2
MYPN
IDH3B
DCAF8
DHX9
H4C8
FCRLB
PHLDA3
CTNNB1
COMMD1
CCT4
FAM187A
EFTUD2
CCDC103
SACM1L
H2BC11
H2AC11
RNF6
H4C1
GRPEL2
NAXE
GPATCH4
MLEC
H3C1
H1-1
PEX2
COA1
SPRED2
TJP2
MPG
RHBDF1
PRNP
GFAP
RBSN
SNRPD1
BUD13
MANSC1
BORCS5
G6PC3
LSM12
CAPRIN2
PPP2CB
PTPN13
ARGLU1
IQSEC1
IFT46
ARCN1
APP
ABCA1
BCL2A1
WASHC2C
CLDN6
TNFRSF12A
THOC6
HCFC1R1
CBX5
HNRNPA1
KIAA0895
CLDN9
GTPBP3
ANO8
MAGEA2B
MAGEA2
CSAG3
ACOX3
TRMT44
CCDC90B
DNM2
DYNLL1
GFM2
EIF2B3
CEP164
SRSF9
ATP5F1E
ERMP1
NANOS3
GFOD2
PDE8A
INTS2
OPN3
CHML
BACE1
ABCA10
MTERF4
SLC35E1
THOC3
CNP
DIDO1