ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9730733 | THP-1
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◣ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

ARL4D
WDR74
STX5
UBC
PABPC4
EAPP
H4C6
H1-3
H3C6
TRIT1
TAF12
H4C3
H1-6
EXO5
SRSF3
YBX1
PRRC2A
AIF1
SZT2
MED8
ZFP69
SIRT4
H4C7
H3C7
CTPS1
ERMAP
SVBP
H4C14
H3C15
H3C14
H2AC19
H2AC18
H4C15
ZMPSTE24
TMCO2
RLF
H3C13
H2BC18
PARP2
CCNB1IP1
NFYC
H4C12
H4C11
H2BC14
H2AC14
CCDC30
ZMYND12
PPCS
PPIE
SLC3A2
C6orf226
CITED4
H1-2
H3C3
TMEM107
SRSF7
CD68
EIF4A1
LOC100996842
PARP16
SMAP2
NFKBIL1
DDX39B
ATP6V1G2
CDC20
ELOVL1
HSP90AB1
SLC35B2
H4C4
H2BC6
CIRBP
FAM174C
H2BC15
H2AC15
EEF1A1
ZNF684
H4C2
H4C1
H3C1
H1-1
H2BC21
H2AC21
H2AC20
STAT1
H3C2
H2AC4
COL9A2
KLF7
ZNF669
RAB13
RPS27
KIF2C
RPLP0
GCN1
IBA57
ATF4
RPL10A
HEXIM2
ZBTB4
SLC35G6
POLR2A
P4HB
INO80D
H2BC4
H2AC6
NASP
PPP1R10
MRPS18B
ATAT1
NCL
SELENOT
TP53BP2
PPP2R5D
PEX6
H3C4
MAT2A
MLLT11
CDC42SE1
AGPAT2
RPS8
H4C9
H2BC12
H2AC12
KCTD18
RPL5
MFSD2A
GABPB2
SNX19
DESI2
MAMDC2
H2BC8
H2AC8
H2BC9
MCL1
RPS6
H2BC3
EIF1
MARCHF7
NLRX1
H2BC5
H1-4
SRP9
RPL12
LRSAM1
P3H1
SCMH1
ACTRT3
MYNN
PPIA
HMGA1
FASN
S100A13
S100A1
CHTOP
POLG2
DDX5
CEP95
ZNF124
RFX3
PCIF1
PABPC1
PUF60
MAD2L1BP
GTPBP2
RSPH9
ID1
TMEM167B
MFSD11
METTL23
SRSF2
JMJD6
C2orf69
POLDIP3
ST3GAL3
FAM166A
STPG3
NDUFAF3
IMPDH2
DALRD3
TUBB4B
HMGN2
LEMD2
H3C8
H2BC10
FOXJ3
HNRNPAB
RPL10
RXFP4
KHDC4
ZC3H10
RPL41
GBA
SMARCA4
ATAD2
ZC3H4
SLC39A7
RXRB
RING1
HSD17B8
ZNF572
HNRNPH1
MIA3
RPS3
PDCD6
RPL18A
MAF1
CYC1
SFPQ
DNAJB4
FUS
EIF3L
ANKRD54
OARD1
NFYA
ARF1
DCAF12
SRF
QSER1
RPS20
ELOB
PRSS33
GPX1
BZW1
DDX19B
AARS1
ZFAND3
H2AX
DPAGT1
HMBS
TBCC
BICRAL
HSPA1B
UNK
H3-3B
ZNFX1
RNPEP
RBM12B
SF1
E2F3
C19orf48
ZNF691
TRAM2
H1-10
NOP58
EGR1
ZNF7
REEP4
SEPHS2
UHRF2
RELT
ZBTB37
UBAP2L
C1orf43
RBM14-RBM4
RBM14
VPS52
RPS18
B3GALT4
PCDHGA1
TAF7
SRSF6
RBMX
ZBED4
KCNQ4
GRIN2D
KDELR1
SLC38A2
LOC730098
CCL27
XKR9
LACTB2
PYCR2
AHCTF1
NSD2
MOB1A
EEF2
ZNF672
NFKBIA
RPL30
MDM4
H4C13
H3C11
H2AC16
H1-5
SEC16A
C9orf163
ELAC1
SMURF2
SLX1B
SLX1A
BOLA2B
BOLA2
SULT1A4
SULT1A3
H2BC11
H2AC11
DENND6B
KIF5B
TBL3
RPS2
RNF151
NDUFB10
RPL3L
ERLIN2
RPS11
RPL13A
CARD9
DNLZ
GPSM1
CALR
RAD23A
FARSA
C6orf62
LAPTM5
RPS10-NUDT3
RPS10
CEBPA
PNP
PIP4P1
SLC34A3
RNF224
RNF208
CYSRT1
COL11A2
RCC1
TAF15
MRPL2
KLC4
CUL7
DENND4B
H4C8
NSMAF
RNPEPL1
DUSP28
ANKMY1
HYI
MTF2
CRK
RNF220
NAE1
FBXO28
CPT2
C6orf47
APOM
GPANK1
CSNK2B
LY6G5B
BAG6
ZC3H6
ACBD6
PKMYT1
PBLD
HNRNPH3
PPP1CC
ZNF253
RPS3A
RBM12
CPNE1
ZNF670
CFD
ELANE
TUBB
MDC1
MATR3
CHAMP1
SLC16A3
ZFP69B
ZNF627
H3-2
SREBF1
TSPAN10
NPLOC4
TOR4A
ZNF326
SLC25A44
PPP3CC
HNRNPC
H3-3A
LCN12
FBXW5
C8G
HNRNPA2B1
CBX3
KATNBL1
MYH9
POLR2D
TAOK1
MAP10
H2BS1
TMEM69
GPBP1L1
PSKH1
NRN1L
GTF2IRD2
GTF2IRD2B
EIF4A2
TUBA1B
TRA2B
CLTA
RDX
ZNF451
GET3
EIF3A
RPS19
SURF2
SURF1
RPL7A
MED22
DGUOK
TNRC6B
GADD45GIP1
YWHAH
C22orf24
LAT
SPNS1
TOMM6
PRICKLE4
FRS3
RPL11
SUMO2
ZNF623
ZBTB22
TAPBP
DAXX
RPL32
CC2D1B
LY6G6F-LY6G6D
LY6G6F
ABHD16A
NARF
CYBC1
LAMTOR1
ANAPC15
OXLD1
CCDC137
ZNF517
ZNF34
RPL8
SLC27A3
SMIM19
SLC20A2
PPIH
SLC39A1
CREB3L4
RPLP1
JTB
SLC39A10
KNTC1
VARS1
TSPOAP1
TMEM79
SMG5
PAIP1
ZNF24
DNPH1
METTL21A
RPL3
HSPA9
LHX9
C1orf53
SUMO3
ADPGK
MAN2C1
MOB4
HNRNPUL1
NCOA5
BBC3
ZFP36
PLEKHG2
SNAP47
JMJD4
CLK1
PTMA
ZFR
CCNL1
LIN9
FOXP1
HENMT1
UBE2L3
TRIM27
EPN1
CDK12
HYLS1
SLC25A11
RNF167
PFN1
ENO3
MED1
PPT1
PXT1
KCTD20
PSMD8
TARDBP
SDCBP
COQ8A
PRDX2
ACTG1
JUNB
ACTR2
TEX30
PCBP2
DDX50
CANX
RBM8A
PEX11B
SETX
POLR2J3
H2BU1
H2AW
MRPS30
TRERF1
CNPY3
EIF5
SUPT20H
STXBP3
YWHAG
CGAS
MTO1
VCP
FANCG
KRAS
NFX1
GALT
SIGMAR1
ARID3C
ZBTB44
PSMD14
NEK8
RPL23A
TLCD1
RAB34
PROCA1
EXOSC3
ZCCHC3
C20orf96
SRSF5
TSSK4
MDP1
CHMP4A
RPL7L1
BOLA2-SMG1P6
RBM39
SUB1
DPYSL2
CAP1
H2BC17
H2AC17
H3C12
NUDT4B
NUDT4
TBL2
OGFOD2
ARL6IP4
ID2
DIDO1
GATAD1
CARD8
SRSF1
INTS6
NPM1
PSMB8
TAP1
PSMB9
TAP2
DPY19L4
USP42
NDUFV3
USP40
CELF1
PDLIM2
TESMIN
CERS2
ANXA9
KCP
SV2A
MTMR11
SF3B4
TIMP3
LYPLA1
ZBTB45
ZNF696
CDC37L1
RHBDD3
EWSR1
CHMP2A
TRIM28
ZNF92
CMAS
SMDT1
PHETA2
NAGA
ZC3H3
RAB7A
AZIN1
RBBP6
RPP25
MRPS18A
TIA1
PCYOX1
KCNMB3
PRCC
SLC30A5
INTS2
BOD1L1
MUS81
CFL1
TGFBRAP1
C2orf49
PPIF
ANP32E
CYCS
ZNF594
ITCH
NACA
DEGS1
UHMK1
MYL12A
HMGB2
BMP8B
TPM3
H2AZ1
DNAJB14
MSRA
NDUFV2
AFG3L2
TKTL1
TEX28
MAK16
PPP1R15B
SHISA5
ZNF700
SCP2
TREX1
ECHDC2
LYPLAL1
SLFN11
HPS6
ARMH3
RPL26
KRBA2
ABTB1
TNKS
HAUS1
ATP5F1A
LDHA
STX10
IER2
PKNOX1
PIKFYVE
USP47
GRB2
NUDT3
EIF2S2
SNX33
IMP3
FES
KRCC1
BCL7B
DCAF8
SDE2
NUP133
HNRNPA3
KPNA1
POMK
SPPL2A
TOR1AIP2
TOR1AIP1
SNRPD1
GTF2A1
DNAJB1
RCE1
OVCA2
UBR2
SLC25A3
MAPK1
PTBP1
ZNF76
CSNK1A1
SF3A1
CCDC157
CHMP5
BAG1
TMEM70
ELOC
ODF3L2
MADCAM1
UQCC3
LBHD1
CSKMT
C11orf98
NNT
RNPS1
GRHPR
KANSL1L
RAB4A
BRWD1
RPS15
LUC7L2
MBD1
CXXC1
ZBTB11
ZNF200
RPL24
PRPF38B
H3C10
H2BC13
H2AC13
CTBP1
VDAC2
THEM4
PRPF8
HES6
TUSC1
RPL36AL
MGAT2
EIF3E
EIF4G2
RGS20
ATP6V1H
DNAH14
PFKL
FMC1-LUC7L2
FMC1
TXNIP
RC3H1
LRIF1
RPLP2
PNPLA2
PIDD1
NUCKS1
CLIC3
LCNL1
ZNF93
KMT5B
RPL36
MICOS13
HSD11B1L
COX18
VPS72
PIP5K1A
MKLN1
PBX2
GPSM3
CBFB
DNTTIP2
ETFA
ETFRF1
CFAP94
NEMP2
RBM4
GNAI3
GPR61
SRSF10
TBRG4
ACSL3
MYL6B
MYL6
RPL23
H2AC7
H4C5
H2BC7
GOLPH3
OAZ1
CEP192
IPPK
UBAP2
NFU1
DDX59
SUSD1
GTF3C3
C2orf66
IL4I1
NUP62
ATF5
CHD1L
PRKAB2
HNRNPDL
ENOPH1
ZNF131
ZWILCH
SNAPC5
RPL4
GTF3C6
PPP6R3
FOXD1
CNOT1
RAB5IF
MTCH1
ARHGAP35
AP2S1
BAZ2A
ATP5F1B
ZNF3
COPS6
TOMM20
DNAJC27
GNAI2
PRRC2C
CBY3
TRAF7
RAB26
NCBP3
VASP
CD19
RNF135
RABEP2
PPM1N
C6orf89
RBM25
PPIL1
TRIM33
RABL6
UHRF1BP1
ZNF574
RPL37A
SLC38A10
NUDT18
PSPC1
C5orf51
GDI2
RPL22L1
C16orf72
ACTN1
RCC2
UPF1
LRRC24
C8orf82
PSMA7
SLC39A13
FBXO4
RRNAD1
ISG20L2
SCCPDH
NSD1
HNF4G
NELFCD
C9orf64
CTNNB1
SUPT5H
RPS16
ZNF207
C17orf75
ZBTB6
RC3H2
RPL21
CKAP2
VPS36
AFF4
NUP54
CCDC116
UBE2Z
RAB22A
SUPT3H
YDJC
OSBPL5
PMPCA
ENTR1
RPL13
EZH2
FOXK2
MRPL37
CYB5RL
LZTR1
GTPBP4
CMPK1
RPS5
VAPA
TPT1
NRROS
EIF4H
TONSL
DOCK2
EIF3D
HDAC4
ATP5F1E
PRRG4
NSF
POLR2E
GPX4
ZNF518A
RPS15A
DELE1
HIF1A
RPL37
CARD6
RANBP6
KIAA2026
MAPK1IP1L
RBMXL1
KYAT3
HSPA4
CAPRIN1
GMEB1
SRPRA
IPP
ANKRD13D
RPP25L
DCTN3
HSPA5
NUP42
UBXN8
TCTA
RHOA
ZFAND5
EIF2D
TNPO1
GUK1
UBE2V2
NAA60
TCF25
ATP6V0C
AMDHD2
LUC7L3
STT3B
SETD2
TATDN2
SRCAP
LOC730183
DAZAP2
STMN1
TMEM216
EEF1AKMT1
UNKL
CFAP410
LSM4
CXXC5
PRKCD
TRIM11
TRIM17
C15orf39
D2HGDH
ZSCAN31
ZKSCAN2
KDM3B
NCSTN
COPA
PRTN3
KPNA2
NSUN4
RACK1
PSMB10
LCAT
CTRL
PGP
E4F1
ASH2L
ZNF280D
TOB2
CHD2
UBXN1
STARD7
ELOVL5
SLTM
SELENOH
BTBD18
CALM2
TEFM
TIGD5
EEF1D
PRPF3
KLF10
KIAA1586
RPL31
TPRN
TMEM203
NDOR1
ADAR
SCAF8
ARHGEF2
INPP5D
ETF1
SRD5A1
NSUN2
PTBP3
TMEM249
SLC52A2
FBXL6
DPH2
B4GALT2
ATP6V0B
CBX5
HNRNPA1
RPL14
SLC1A5
SH3GL1
CHAF1A
SMC5
HSPB1
SPI1
RPL6
PTPN11
SON
GART
CYBA
MRC2
POLG
ACAP2
ENOSF1
SART1
BMS1