ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX20230572 | Ishikawa
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◣ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

CTNNB1
MTF2
CLTC
MRM3
GLOD4
B4GALNT3
TMEM41A
LRP6
CCDC88A
CALM3
PPP5D1
SOD2
WTAP
GPAM
NCBP2AS2
NCBP2
TBL3
RPS2
RNF151
NOXO1
SSNA1
ANAPC2
ZC3H6
CALM1
MRPL21
IGHMBP2
CCNL1
SEC13
MXD4
KMT5B
HEXIM2
MRTO4
EMC1
DOLPP1
PRKACA
ATAD2
BRWD1
DDIT4
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
ATG14
NXF1
NOTCH2
ZFAND2A
HMGCL
IST1
KPNB1
PIK3IP1
NAGPA
STX18
LAMP1
TSN
SPATC1L
ZNF212
RCL1
MTMR2
COQ7
TMEM222
UBQLN1
ADPGK
CYCS
UBE2B
CDKL3
EIF2D
DDX23
DIP2A
COPS8
CHD2
UBN1
GLYR1
NUP214
MCM7
AP4M1
DOHH
FZR1
LAT
SPNS1
TOB2
WASHC2C
TCF3
PEPD
TRIAP1
COX6A1
SNRNP70
CALM2
AMOTL2
TRIP12
FBXO36
VPS37A
CNOT7
ARF4
ARNTL
ZNF721
PIGG
UBE2D3
CYP51A1
RPS28
NDUFA7
USP42
TAF5
RERE
TSPYL2
RASEF
PKM
ENDOV
CTDP1
PHIP
MYLIP
CORO7-PAM16
CORO7
DNAJA3
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
PSMD3
PNRC1
TMA7
CCDC51
ATRIP
SLC9A1
HEXA
ZKSCAN2
MRPS35
COQ9
CIAPIN1
ADK
TIMM22
HAGH
FAHD1
PI4K2A
MORN4
PDE6D
COPS7B
TMEM199
SEBOX
POLDIP2
POMZP3
WDR53
FBXO45
WDR25
WARS1
ARHGEF12
KMT2D
RHEBL1
WASHC2A
TXN2
GTF2H3
EIF2B1
MAIP1
NOC4L
DDX51
TCF12
HOXD9
HOXD8
PINX1
HSP90AB1
GHITM
SLC44A2
CALR
RAD23A
MRPL58
SPATA25
NEURL2
CTSA
ZSWIM1
DSTYK
KDM4B
COMMD1
CCT4
SPRYD3
CKS2
SECISBP2
RBM42
DCP1A
CASC3
NMNAT1
LZIC
CFAP410
TOMM22
NBPF1
TBCB
POLR2I
OVOL3
ZSWIM7
TTC19
FUS
PMPCA
ENTR1
POLR2J3
PBLD
HNRNPH3
MRPL20
CCNL2
MTERF4
PRTG
PRSS22
C8orf33
MVD
SMN2
SMN1
TIMM21
FBXO15
SCGB1C2
SCGB1C1
ODF3
RCOR1
SUMF1
UBC
DUS2
DPEP2NB
DDX28
CHCHD1
ZSWIM8
FUT11
GET3
ZC3H3
U2AF1L5
U2AF1
PEX3
ADAT2
ACSL3
SARAF
UHMK1
ADNP
PCID2
CUL4A
TTC4
MRPL4
DCAF8
CRBN
MARCHF8
RLF
APTX
DNAJA1
ECSIT
CNN1
STX16
VDAC2
ATXN2L
MANF
RBM15B
HDAC10
TUBGCP6
TAOK2
AMIGO3
GMPPB
SLC39A5
RNF41
NABP2
ZFAND4
MAN1A2
TOB1
MFN2
SLC25A1
ABAT
USP30
PACSIN3
ARFGAP2
KCNIP2
IPO11
DIMT1
TARBP2
MAP3K12
NPFF
TENT5C
TMEM79
SMG5
CLCN7
TMEM262
ZFPL1
CDCA5
MAEA
YPEL2
DIABLO
DYRK1B
HMGB1
USPL1
OAZ1
SRRD
HPS4
PELP1
ARRB2
TMEM217
TBC1D22B
ACOX3
TRMT44
SRSF11
LRRC40
IER5
NDUFS7
TIMM50
POLR3D
TMEM128
MRPS15
C16orf89
ALG1
MYZAP
GCOM1
DCAF10
TFRC
LMTK2
NABP1
GTF3C5
H2AX
DPAGT1
HMBS
MYBL2
AP5Z1
CFAP43
HNRNPL
AURKAIP1
RPS6KB2
PTPRCAP
NAA80
IFRD2
HYAL3
MAPKAPK5
TMED2
PIK3R3
ID2
PHF5A
ACO2
TMEM11
FAM207A
CDKN2AIPNL
FOXJ3
SMPD4
MZT2B
LONP1
CATSPERD
PARL
HTRA2
DQX1
DDX1
SRSF6
FAM53C
CDC25C
IP6K2
SPTLC1
CMTR1
WASHC5
NSMCE2
TBCCD1
DNAJB11
MRPL37
CYB5RL
MKNK2
PSPH
CCT6A
HNRNPAB
CCDC77
KDM5A
TRMT61B
OAZ3
AARS2
FRA10AC1
PCCB
ZNF517
ZNF34
RPL8
FBXO28
HOXD10
TEPSIN
NDUFAF8
ATG7
UQCRC1
WDR43
OPA1
ULK2
PPIL4
MCU
C6orf132
NDUFAB1
SP2
SESN3
HERPUD1
ETNK1
RPL22
RNF207
PKN2
GSTT4
CABIN1
SPRYD4
FAM133B
PPT1
MTHFD2
ATP8B1
TOP3B
SNAPC3
TFDP2
FAM180B
NDUFS3
KBTBD4
YWHAQ
FBXW2
EXO5
FAM71E1
EMC10
PCIF1
ZNF148
SPRED1
RANBP2
SPOUT1
FBF1
GCHFR
RMDN3
ZER1
MRPS11
MRPL46
PSMD8
CNP
VCL
GOLGA1
MED9
DYNLL1
THAP9
SEC31A
PLEKHM3
NDUFV1
RRP7A
PPP1CA
TAF15
RAD9A
PHAX
ALDH7A1
NLK
DBNDD2
GSTO2
NSFL1C
TEDC1
CRIP1
ANKFY1
UBOX5
FASTKD5
PSME3
BECN1
DNAJB12
CLP1
ZDHHC5
CDKN2C
CAPN10
FAF1
CBWD5
CBWD3
CBWD6
TIGAR
EIF4A2
MSTO1
PLEKHN1
KLHL17
NOC2L
RPS5
ZNRD2
FAM89B
EHBP1L1
ORMDL3
GSDMB
CCDC43
TDRD9
ATP5MPL
C4B_2
C4B
STK19
LOC110384692
DXO
C4A
FBXO24
LRCH4
AJUBA
TMEM88
RCOR3
TNKS
KDM6B
TULP3
PA2G4
TEKT2
ADPRS
XPO4
RFXANK
BORCS8-MEF2B
BORCS8
CACTIN
VPS33A
MON2
RPL13
LANCL2
TDRKH
SLC9A3R1
TAGLN2
UBALD2
KRT80
ASNS
PSTK
TMEM104
NAT9
PTP4A1
NUDT15
EIF3F
TBRG4
SRPRA
ANXA7
DDX50
GIPC1
ZNF594
FEM1C
GARS1
GRHL2
TIMM44
HDAC4
PIGU
KLHL12
POLG
MICU2
RPLP1
SRP68
ZACN
GALR2
GTF2IRD2
GTF2IRD2B
PEX26
PSMF1
PTEN
KLLN
ZNF839
EDF1
PLK2
CCT2
DIP2B
FAM156A
FAM156B
ATAD3A
SLC7A6OS
PRMT7
TMPO
SUPV3L1
YIF1A
TMEM151A
MAPK11
KPTN
ZNF789
ATP5MF-PTCD1
ATP5MF
SIVA1
GLRX3
WDHD1
SOCS4
RRBP1
NUP160
LDHA
DCPS
CANT1
H1-10
GATAD2A
LTO1
RAB4B
MIA
VCP
FANCG
CCDC34
DNAJB1
NUP188
DOLK
TECR
RPL6
PTPN11
TPRN
TMEM203
NDOR1
NDUFB8
HIF1AN
LRRC59
MAD1L1
C16orf70
NUDT1
MRM2
WASF2
TSR1
SGSM2
NAGK
RAD50
RUSC2
GABPB1
ZFAT
SURF6
METTL9
VAMP1
ZBTB45
SLC27A5
CCDC134
PDCD4
NCL
CNBP
DCAF1
GID4
ATPAF2
PALB2
DCTN5
FAM204A
SFR1
EPHB3
RPUSD4
FAM118B
EXOSC8
ALG5
RTF2
VCPKMT
SLC25A28
THOC3
NCOA4
RPLP0
GCN1
LIPA
TOP2B
ACAD9
C5orf51
SETD1A
ORAI3
DDX46
DEXI
CLEC16A
RFX3
ASH2L
GABARAP
ELP5
CTDNEP1
CLDN7
NOL7
FEM1A
PARPBP
NUP37
SLC25A38
GNB2
NARF
CYBC1
MSMO1
SRSF5
ATP9B
ZFP1
LUC7L
FAM234A
UNK
H3-3B
SMIM13
SLC35B1
FAM161B
COQ6
CDH1
EEF2
THUMPD1
CZIB
MEF2D
POLR3E
ZNF337
TIGD6
HMGXB3
KHDRBS1
CUTC
COX15
AGAP3
TMUB1
FASTK
BLOC1S2
BOD1L1
ZC3H10
RPL41
ESYT1
SMIM41
ATG101
RNPS1
NRL
PCK2
ARHGEF7
LZTR1
ATAD3B
WDR18
RNASEH1
EPRS1
GTF2I
RNMT
FAM210A
DOK7
ZW10
CLDN25
RPL18A
TJAP1
TSR2
CLIC4
PSMD6
LRRC57
HAUS2
EIF1
SUCO
MOB3A
IZUMO4
TEFM
UBIAD1
MARK3
TUBGCP5
FANCD2
VAMP2
PER1
FDFT1
SART1
POR
PDK2
MTG1
TMEM42
PGP
E4F1
BRICD5
TRAF2
STARD7
R3HDM2
INHBC
SH3GL2
PDE4DIP
HAUS5
DENR
PTPN4
CAPZA2
REXO1
MRPS7
MIF4GD
GGA3
WDR6
RPSA
JPT1
PCNX4
CEP55
C10orf143
NOP56
HGS
ARL16
CEP350
PFDN2
NIT1
PUF60
DPP9
GPS2
EIF5A
KLHL18
KIF9
LGMN
MCCC1
RANBP3
CCDC130
HDAC6
TK1
AFMID
RUBCN
H2BC21
H2AC21
H2AC20
ZBTB20
UBA52
ZGPAT
ARFRP1
RAB5IF
PSMD7
RPAP3
DCP1B
PACSIN2
WDR81
STX6
TLCD2
P2RY11
PPAN-P2RY11
PPAN
ANGPTL6
C19orf48
IER5L
SH3GLB2
MIGA2
YY1AP1
DAP3
KCTD5
OGDH
RAB8A
ASB6
UMPS
MAML3
MRRF
GADD45G
NOCT
TAX1BP3
EMC6
RPL3
MRPS5
KLF10
HBS1L
KCTD9
CDCA2
TMEM39A
POGLUT1
HPS5
GTF2H1
PSMC5
FTSJ3
PAK4
MDM4
THOC1
TFB2M
CNST
HMGCS1
ALKBH3
EXOSC3
ATF4
COQ10A
ANKRD52
ASAH1
SMAGP
COQ8A
MICOS10-NBL1
MICOS10
BRAP
ACAD10
PNRC2
ZFAND5
OSCAR
NDUFA3
STIP1
PSMD12
RASSF1
TUSC2
HYAL2
SPC24
CDK5RAP1
LNPK
ABRAXAS2
EEF1AKMT2
SEC11A
FPGS
SNX13
ASL
ZBTB8OS
RBBP4
ASH1L
CENPH
THAP7
SFSWAP
EIF5
HNRNPM
SLC25A26
IL4I1
NUP62
ATF5
PRRC2A
AIF1
PPP4R3A
TMEM109
PRPF19
SMIM10L1
PRH1-TAS2R14
PRH1
SLC25A42
FARSA
TIPARP
TMEM95
KCTD11
SUN3
C7orf57
SRSF1
RAVER1
ICAM3
INO80
ZNF740
CSAD
NEK9
SYMPK
FOXA3
RHNO1
FOXM1
CREM
ZNF326
STYXL1
MDH2
TRDMT1
MAK16
YEATS4
NFATC4
RBL1
PTPN6
C12orf57
ATN1
TSNAXIP1
RANBP10
UNC50
COA5
RPP38
ACBD7
ZNF574
GRIK5
DOK3
DDX41
TSR3
GNPTG
PLAG1
CHCHD7
NOL10
RUVBL1
EEFSEC
RPS3
STAT1
RPAIN
NUP88
MKS1
LRCH3
RBM4B
COG2
PCNA
TMEM230
THBS1
IQCH
AAGAB
IDI1
WDR37
UNC45B
NLE1
MRPS16
DNAJC9
RPS15
SLC25A16
KCTD7
NELFA
TXNL4A
TRA2B
PLCXD2
RNF141
GXYLT1
EXT1
CEP20
MRPL39
SF3B2
GAL3ST3
ASF1B
FAM76B
CEP57
RMI1
HNRNPK
MCF2L
MZT2A
EIF4A3
RPL35
ARPC5L
WDR38
SHBG
FXR2
MVK
WFDC3
DNTTIP1
TEDDM1
GLUL
ZNF75A
TIGD7
CCDC91
CEP131
MALSU1
OR6B2
NDUFA10
NUP93
ZNF775
TRMT2A
RANBP1
VPS26C
CHPF2
ABCF2-H2BE1
ABCF2
TRPC4AP
BCKDHB
ZNF718
ZNF595
UQCC3
LBHD1
UBXN1
CRY2
E2F6
PPIA
ING5
LOC101928764
SLC34A2
IARS1
PPRC1
NOM1
WBP1
INO80B
MOGS
ZNF865
ZNF524
FIZ1
EEF1E1
ZFHX2
THTPA
BRIX1
RNASEH2C
KAT5
TECPR1
SERTAD1
PRX
THRAP3