ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX14127544 | OCI-AML3
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◣ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

MAMDC2
DUX4
H4C12
H4C11
H2BC15
H2AC15
H4C14
H3C15
H3C14
H2AC19
H2AC18
H4C15
H2BC14
H2AC14
H2BC21
H2AC21
H2AC20
EGR1
H3C13
H2BC18
FOS
H1-2
H3C3
H4C9
H2BC11
H2AC11
H2BC12
H2AC12
TSPOAP1
H2BC5
H1-4
H4C13
H3C11
H2AC16
H1-5
CD68
EIF4A1
LOC100996842
MPDU1
MCL1
H4C2
H3C2
H2AC4
H4C1
POLG2
DDX5
CEP95
TEDC1
CRIP1
CRIP2
SRSF7
CKS2
SECISBP2
FOSB
PTMA
H2BC4
H2AC6
H4C6
H1-3
H3C6
H4C8
H4C7
H3C7
H2BC9
H2BC8
H2AC8
TRA2B
ATF4
H2BC17
H2AC17
H3C12
ZBTB37
KLF7
DDX3X
MDM4
EEF1A1
ACTG1
H4C3
H1-6
PPARA
TUBA1B
TPI1
SPSB2
TAF12
GPS2
EIF5A
PPIA
H3C10
H2BC13
H2AC13
UBC
NRIP1
EIF1
ACTB
UNK
H3-3B
GAPDH
TMSB4X
H3C4
H2AC7
H4C5
H2BC7
CA2
ZBTB4
SLC35G6
POLR2A
BBC3
DDX21
NUCKS1
NPM1
CALM2
MAT2A
FADD
MFSD11
METTL23
SRSF2
FTL
JMJD6
PPP1R10
MRPS18B
ATAT1
UBAP2L
C1orf43
JUND
IQCN
H3C1
H1-1
SLC39A10
MTHFD2
SFPQ
EAPP
WDR74
STX5
FRG2C
FUS
H2BU1
H2AW
VIM
RCC1
HNRNPA2B1
CBX3
HNRNPU
GPX1
H4C4
H2BC6
RRP12
PHRF1
ZFP36
PLEKHG2
TAF1D
C11orf54
PABPC1
ZNFX1
HMGN2
PRDX2
JUNB
ZFP36L2
HNRNPA3
HSPA8
EFCAB2
EIF4A2
HNRNPH1
STX10
IER2
ANP32B
NEK8
RPL23A
TLCD1
RAB34
PROCA1
HIPK3
EEF2
ANP32E
TUBA1C
SLC38A2
SLC3A2
COL23A1
RFX1
CXCL8
POLDIP3
ADPGK
ZNF517
ZNF34
RPL8
TFRC
HNRNPF
SUB1
ELMO2
ANKRD13D
ENO1
SRSF3
SRSF6
N4BP2
TBL3
RPS2
RNF151
NDUFB10
RPL3L
CIRBP
FAM174C
BCLAF1
PMAIP1
ART1
H2BS1
KMT2E
NFYC
OAT
MUC3A
GABPB1
NCL
RBM39
PPIF
RPSA
SRSF5
P4HB
CITED2
ZCWPW2
AZI2
RPL10
PARP16
RPS20
RPS19
HNRNPAB
LTB
TNF
LTA
XBP1
CNBP
C19orf48
FRG2
PRDX1
EIF5
RPLP0
GCN1
UCK2
YWHAZ
ODC1
TRIB1
H3-2
SNX16
BTG1
MBNL1
GAS8
SF1
RPS11
RPL13A
PCF11
NFE2L2
TRAF7
RAB26
PCBP2
ETF1
RMI1
HNRNPK
TANK
UBE2S
HNRNPD
SLC25A11
RNF167
PFN1
ENO3
TAGLN2
EIF4G1
LRTM2
ACTRT3
MYNN
SNX5
MGME1
CXCL1
RPL12
LRSAM1
RPL21
TASL
ARL4D
GSTA4
PDCD4
NDUFAF3
IMPDH2
DALRD3
LDHA
TMBIM4
PSEN1
RPS23
ATP6AP1L
MUS81
CFL1
PNP
PIP4P1
KLF6
GTF2A1
APTX
DNAJA1
YBX1
SLC16A3
PLEKHA4
PPP1R15A
IRF2BP2
KLF9
NKIRAS1
RPL15
CBX5
HNRNPA1
KPNA2
CLK1
ATAD2
SUPT5H
RPS16
ZFAT
PABPC4
LUC7L2
SETD7
PTPN6
C12orf57
TEDDM1
GLUL
TMEM267
SIRT4
JPT1
PCIF1
RPS8
MATR3
THBS3
MTX1
KLF2
ZNF217
YWHAG
PBLD
HNRNPH3
COQ2
WDR43
SLC7A1
CORO7-PAM16
CORO7
DNAJA3
INO80
CEBPA
THBD
PCBP1
FASN
TPT1
CCT5
ATPSCKMT
TLK2
HSP90AB1
SLC35B2
E2F3
GOLM2
ZWILCH
SNAPC5
RPL4
RPL10A
CTBS
ARF4
LRRC37A3
LDLR
H4-16
H2AJ
EGR3
HDGF
RHEB
C6orf62
RPL22L1
HSPA4
NFKBIZ
DENND4B
REPIN1
ODF3B
TYMP
SCO2
RPL13
AZIN1
UNKL
NRROS
CYB561
NR4A2
HSH2D
LOC102724770
DGCR6
EIF4A3
RPS13
BTF3
SLC7A5
DARS1
GTF2I
FRAT1
MARCHF6
FAM43A
HSP90AA1
XPOT
CITED4
ZC3H4
CCNL1
SRCAP
LOC730183
TMPO
HMGB2
ZC3H6
RPL27A
RPL31
GPN3
FAM216A
S100A13
S100A1
CHTOP
LSM8
SRGN
RPL37
CARD6
RPS12
IVNS1ABP
RECQL4
LRRC14
MFSD3
GPT
ZBTB25
ZBTB1
NOP58
NME2
RFX3
MPC2
DCAF6
PTBP1
UQCC3
LBHD1
CSKMT
C11orf98
CHMP2A
UBE2M
CCNI
RPLP2
PNPLA2
PIDD1
RPL17-C18orf32
RPL17
C18orf32
GDI2
YWHAE
ANTKMT
HAGHL
CCDC78
PLPPR3
AZU1
RPL3
GPCPD1
TMEM187
HCFC1
DUSP2
ASTL
H2AX
DPAGT1
HMBS
PHB2
ALDOA
ST7L
CAPZA1
ENOSF1
ZNF487
FABP5
RAI1
ASXL1
PAN3
BHLHE40
HNRNPDL
ENOPH1
DLX1
RPL32
SMARCC1
TARS1
UBE2D3
SPAG7
ETV6
USP22
PRKAA1
PRCC
ING3
FAM53C
CDC25C
HERPUD1
CCDC116
APOLD1
CDKN1B
SPRED2
YDJC
SRSF1
PTP4A1
RXRA
ACTR2
IFRD1
KIF2C
RPS15A
RAB11FIP1
H2AZ1
DNAJB14
MORF4L1
CCT2
ARHGDIA
CDC42
RNH1
TMEM167B
RPS6
HSPA1B
PKM
HSP90B1
NDRG1
CTCF
S100A11
OPA1
MCM6
MBP
ZNF804A
ISOC2
LONRF1
ZC3H10
RPL41
TOB1
RAB13
RPS27
CD164
ZFAND5
TIGD5
EEF1D
RCC2
JUN
LYN
MID1IP1
SESN2
TTC30B
NUFIP2
ACTR3
RBM3
NXF1
HNRNPL
ID1
MDM2
TXNRD1
MYLIP
SARAF
GTF2IRD2
GTF2IRD2B
NDUFS1
EEF1B2
KNTC1
JADE1
RPL29
SDE2
KDM6B
CREBZF
B2M
ELK4
GTF3C6
SLC22A4
DHRS9
ERLIN2
GTPBP4
PUF60
DDX59
ZNF787
GSG1
TSC22D3
ERCC1
FOXP1
LYST
RELT
NFKB1
OGFRL1
PAF1
MED29
IL6R
ATP2A2
TRPM2
TOB2
RPLP1
STYXL1
ZNF207
C17orf75
MDH2
ATAD2B
SCAF8
EBAG9
BCOR
ZNF335
SURF2
SURF1
RPL7A
MED22
TMEM190
TMEM238
RPL28
TNFSF9
SYNCRIP
PAIP1
HSPE1-MOB4
HSPE1
HSPD1
ID2
USF1
TSTD1
CHD1
SMARCE1
ZNF131
ZNF124
MKNK2
SNRPB
EZH2
EP300
BACH1
LRP8
STAG1
ARHGAP39
NASP
BPTF
BTNL9
ST3GAL1
MEF2D
ETS2
STAG2
PNN
TRAPPC6B
SINHCAF
TMEM70
ELOC
EIF4G2
FTH1
DUSP1
IL17RA
PPDPF
ZBTB11
RPL24
PPP4C
KEAP1
TMX4
MCM7
AP4M1
SNRPD1
ILF3
TMEM107
HIPK1
BAZ2B
ANKRD18B
PLIN5
LRG1
TIMP3
PPRC1
FMC1-LUC7L2
FMC1
TRIM27
LRRC24
C8orf82
WDR49
RBM14-RBM4
RBM14
GGNBP2
MYO19
DOT1L
SETD5
DDX19B
AARS1
INTS6
OSBPL1A
CXCR4
KATNAL2
SNTB1
PIAS2
HSPA5
SLC19A1
RBMX
PPP2R2A
RPS3
LONP1
CATSPERD
ATP6V0C
AMDHD2
PPP1R15B
CAPZA2
ARIH1
TBC1D5
PRMT1
PPP1R27
MCRIP1
NPEPL1
RGL2
PFDN6
WDR46
YTHDF3
CFLAR
RAN
MAPK1IP1L
SLTM
DHX9
TAF4
SLC25A33
HMGB1
DDIT4
IPO7
GOLPH3
ITGA4
POLR2J3
RPS26
CAP1
ING5
RNF138
DNAAF2
CEBPB
CYCS
EIF3A
CCDC85B
XPO6
FOSL1
LMNA
MICOS10-NBL1
MICOS10
INO80D
ANXA2R
HMGA1
RARA
CENPA
KIF27
IRF2BPL
RPL6
PTPN11
GADD45B
PABPN1
FIBP
SLC25A13
TBL1XR1
FBXL17
MRPL3
ADIPOR2
RHBDD3
EWSR1
CDK12
RRM2
PHF19
ATG16L2
EIF3E
STMN1
EIF4E
CSDE1
MOB1A
CTNNB1
KANSL1
SRSF4
DHX15
LIG3
ZNF766
CDV3
MIDEAS
ATP2B1
TXN
GMEB1
LAT
SPNS1
GPAA1
EXOSC4
NACA
NSMAF
RPL18A
WDR6
GRPEL1
ERAP1
ZAR1L
BRCA2
HNRNPC
MICAL1
CCL5
BANP
RNF169
CTPS1
BZW1
WDR1
NIPBL
BAZ1A
HSF1
BOP1
RPL5
UAP1L1
COX20
RHOF
MAN1B1
SETD1B
CEP350
CCDC200
AKAP8
TCERG1
TIGD1
EIF4E2
SRF
DDX17
NOP56
H1-10
DYRK1A
RBM12B
ARHGAP26
INSIG1
PAK2
DBI
C2orf76
RPS27A
CLHC1
SMIM19
SLC20A2
UHRF2
C9orf40
STRN3
AP4S1
SPRY2
UBB
VCP
FANCG
WDR4
EIF4B
PRDM10
DNAJB4
RNASEH2B
MED31
C17orf100
E2F5
EDEM1
FUBP1
CPQ
ADGRE5
NUP153
PRR22
DUS3L
SSU72
RAB7A
RPL35
ARPC5L
WDR38
ZNF24
PIGW
YBX3
ANP32A
CFD
ELANE
ZEB2
CALM1
GABPA
ATP5PF
NNT
NFIL3
RPL37A
ZFX
ZMYND11
WDR25
WARS1
LIN9
GRB2
ARIH2
SREBF1
C16orf54
SPI1
OAZ1
NOCT
NRF1
FAM83D
ZYX
FAM131B
LAPTM5
HNRNPUL1
KDM3B
NAP1L1
FAIM
SIK3
TUBB
MDC1
HSPA9
NUDT4B
NUDT4
TCTA
RHOA
ZNF532
SERBP1
RPS9
TSEN34
RBM12
CPNE1
VMP1
PTRH2
RUNX1
ZNF22
PLAC8
GNB1
RAD23B
RPL7
RDH10
NABP1
SEC63
TRA2A
SBNO1
LRIF1
IQGAP1
PPP3R1
NUDT19
PHF10
SRRM2
RNPEPL1
DUSP28
ANKMY1
HNRNPR
MNT
AHRR
STAT1
TFAP4
NAA10
ARHGAP4
SLC22A15
GBE1
PCBD2
SUSD1
ZBTB2
KMT5B
NBN
COQ8A
SLC25A32
DCAF13
CSNK1D
HK2
NFKBIL1
DDX39B
ATP6V1G2
DYNLL1
ELF2
C5orf24
SRSF9
SSBP4
TFAM
TNFRSF10B
FLT3
ARPC3
RACK1
CCDC57
TADA3
ARPC4-TTLL3
ARPC4
MED17
RNF135
VEGFA
ZCWPW1
PPP1R35
MEPCE
SERPINB8
SFMBT2
ARSD
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
DDX23
MTF2
NAA80
IFRD2
HYAL3
HEXIM2
LAMP1
NOXO1
CLTC
FEM1A
DSTYK
PDE6D
COPS7B
CDCA3
EIF2D
CHPF2
ABCF2-H2BE1
ABCF2
CALR3
C19orf44
STX18
TMEM41A
BRWD1
TIMM21
FBXO15
NCBP2AS2
NCBP2
MRPL21
IGHMBP2
UCKL1
DCP1A
CALM3
NOTCH2
TSNAXIP1
PPP5D1
RANBP10
SOD2
PAFAH2
GSPT1
TMEM11
WTAP
WDR53
FBXO45
GTF3C5
TMEM199
SEBOX
POLDIP2
NPRL2
TMEM222
TMEM115
CYB561D2
SPATC1L
ARHGAP35