ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX20230569 | Ishikawa
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◣ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

CTNNB1
MTF2
TSC1
GFI1B
CKS2
SECISBP2
LRP6
GATB
NAGPA
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
ATAD2
CALM2
SOD2
WTAP
IP6K2
BRWD1
KCTD9
CDCA2
HEXA
KMT2D
RHEBL1
KDM4A
CALM3
PPP5D1
CLTC
CCDC88A
ZC3H6
CCNI
WASHC2A
KPNB1
VCP
FANCG
CCDC77
KDM5A
PPWD1
CENPK
CYP51A1
CCNL1
NXF1
PDCD4
SAP30BP
RECQL5
WASHC2C
TCF3
CFAP20
KMT5B
NOTCH2
CALM1
CNOT1
SCGB1C2
SCGB1C1
ODF3
ARHGEF12
ATG14
ARRDC4
DDX23
TOP2B
ZKSCAN2
LAMP1
RPS26
IPO11
DIMT1
SESN3
CCNG2
OGT
DDIT4
GSTA4
TMEM199
SEBOX
POLDIP2
SPRED1
STX18
HEXIM2
UBC
LAT
SPNS1
DOLPP1
RBL1
CHD2
PBLD
HNRNPH3
PIK3R3
TMEM41A
PHIP
POLR2J3
MCU
CYCS
RCOR1
UBE2D3
TRIP4
PCLAF
IDH3B
MRM3
GLOD4
RBM42
TCF12
UBB
TAF5
PRR5L
COMMD9
AJUBA
IST1
GRHL2
SPATC1L
OPA1
ZNF518A
METTL25
CCDC59
TRIP12
FBXO36
WDR53
FBXO45
DYRK1B
SLC9A1
DIP2A
TRIAP1
COX6A1
TRMO
HMGB1
USPL1
AP1G1
ARNTL
WASHC5
NSMCE2
SENP2
GABPB1
GTF3C5
TMEM242
TSFM
EEF1AKMT3
METTL1
CYP27B1
NCBP2AS2
NCBP2
TOMM22
RPLP1
ATF4
ERAL1
TYK2
ZNF124
ATXN2L
NLK
ENDOV
PAFAH2
VIRMA
HAGH
FAHD1
MEF2A
B4GALNT3
RFX5
FOXJ3
SPATA25
NEURL2
CTSA
ZSWIM1
MRPL21
IGHMBP2
EIF2D
GPAM
MED23
RDH5
ITGA7
BLOC1S1
CHPF2
ABCF2-H2BE1
ABCF2
PDE6D
COPS7B
HMGCL
MRPL39
GTF2H3
EIF2B1
PEX3
ADAT2
TIMM22
TET3
MRTO4
EMC1
UBE2B
CDKL3
SRSF7
FUS
EAPP
MCM7
AP4M1
NDUFS7
SLC3A2
VPS33A
SHBG
FXR2
PRSS22
MRPS35
UBE3B
KCTD10
MTMR2
FAM204A
BORCS7
MAPKAPK5
ALKBH3
MXD4
TROAP
ABT1
ZNF335
DBNDD2
NUP214
ING3
JPT1
C5orf51
TOB2
PRKACA
TMEM222
HNRNPAB
PINX1
MAGOHB
SPTLC1
H2AX
DPAGT1
HMBS
HOXD9
HOXD8
SUPV3L1
POMZP3
PRDX1
TBCCD1
DNAJB11
ZSWIM6
RPUSD4
FAM118B
DUS2
DPEP2NB
DDX28
ZNF585B
ZNF383
CWC25
FEM1A
RCL1
ZCCHC4
SFSWAP
DOHH
FZR1
FAM149B1
ECD
CDKN2C
FAF1
COPS8
RPL22L1
UBQLN1
PLK2
NMNAT1
LZIC
PI4K2A
MORN4
SMN2
SMN1
SNRNP70
HBS1L
ZNF212
TIMM21
FBXO15
MAIP1
SPRYD4
GSTO2
RAP2A
NDUFB8
HIF1AN
GPN2
GPATCH3
WDPCP
MDH1
COQ7
RNF103-CHMP3
RMND5A
RTTN
POLR3F
DZANK1
ACTL6A
PSTK
RPLP0
GCN1
PNKP
AKT1S1
TOP3A
SMCR8
TBC1D17
FAM180B
NDUFS3
KBTBD4
DNAJB12
ITGB3BP
EFCAB7
GOT1
TSPAN31
MARCHF9
CDK4
AGAP2
ZFAT
ARL6IP1
PKM
TFRC
G3BP1
MAGOH
MSMO1
STX16
FRA10AC1
CCDC86
CBWD5
CBWD3
CBWD6
MRPL48
NDUFA9
AKAP3
PGBD4
EMC7
USP30
HOXD10
GHITM
TRMT61B
ZNF540
ZNF571
EIF4A2
RPS3
P4HB
ARHGDIA
ZNF789
ATP5MF-PTCD1
ATP5MF
PFKM
SENP1
RNASEH2C
KAT5
HSPA5
TMEM217
TBC1D22B
CHCHD1
ZSWIM8
FUT11
TDG
C12orf73
TOM1L2
DRC3
BRIP1
SSNA1
ANAPC2
RPS28
NDUFA7
BAZ2A
ATP5F1B
SLC7A6OS
PRMT7
COMMD4
CCNC
SP2
SNRPD3
GUCD1
SPRYD3
SEC13
TAOK2
CSRNP2
PEPD
SRSF1
RBM48
PEX1
WDR25
WARS1
PAN2
IL23A
AP3M2
TFCP2
IER5
RPP30
SF3B5
TGFBRAP1
C2orf49
SLC25A53
FAM199X
DNTTIP2
CKAP2
VPS36
PIK3IP1
PHF5A
ACO2
ATP6V1G1
RANBP6
KIAA2026
MED4
TSN
C12orf43
DCP1A
NDUFB5
MRPL47
BAGE5
BAGE4
BAGE3
BAGE
RLF
MTERF4
VPS37A
CNOT7
TFPT
PRPF31
MYLIP
APLP2
TSR1
SGSM2
MRPS16
DNAJC9
SRSF11
LRRC40
POLG2
DDX5
CEP95
TBRG4
PNRC1
GNAL
CHMP1B
MIS18A
GOSR1
SNRPC
POLR1F
ZC3H10
RPL41
ESYT1
FRG2C
GTF3C3
C2orf66
PPP1R8
CDCA3
MFN2
KDM4B
RPS12
GPR84
TBL3
RPS2
RNF151
NOXO1
DSTYK
GTF2I
DGLUCY
RPS6KA5
RAB11A
ZWILCH
SNAPC5
RPL4
AP5Z1
UBN1
GLYR1
ZNF8
MRPL58
ISY1-RAB43
ISY1
TACO1
PSME3
BECN1
POLR3D
ZNF514
ZNF2
ID2
PCNA
TMEM230
HSP90B1
ARL15
HERPUD1
DDX46
PPIL4
CLK3
U2SURP
ZFYVE26
RAD51B
SUMF1
SEC62
RANBP2
TBC1D22A
UMPS
WDR11
RWDD1
MIA3
SON
GART
PCID2
CUL4A
TSPYL2
C19orf48
ELAVL2
PARPBP
NUP37
ATP8B1
SCFD1
RAB5B
PMEL
CDK2
VAMP1
AFF1
COQ9
CIAPIN1
ZSWIM7
TTC19
RPS9
TSEN34
RBM19
ATG9B
ABCB8
MMUT
CENPQ
PLEKHM3
PRKAG1
PTCD3
POLR1A
PPIA
TMEM88
GATAD2A
KDM6B
SLC25A41
KHSRP
C8orf33
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
ATG7
GIPC1
BRIX1
RPL12
LRSAM1
TULP3
SPRING1
RNFT2
HAUS5
PACSIN3
ARFGAP2
ZBTB4
SLC35G6
POLR2A
TFIP11
DNAJC19
TSR2
USP42
ZFAND4
FEM1C
MRPL45
LMTK2
SETD3
CCNK
TMBIM6
BRF2
KDM5C
LDAH
ZNF143
CASC3
PISD
FAM98B
FBXO24
LRCH4
RBM14-RBM4
RBM14
KDM2A
RBBP8NL
ADPGK
ARL4D
AZIN1
ZNF721
PIGG
COQ10A
ANKRD52
RPL22
RNF207
MDM4
NMT1
DCAKD
ZNF839
APTX
DNAJA1
NECAP1
MRPS11
MRPL46
CDS1
PELP1
ARRB2
RPL3
XRRA1
SPCS2
VPS11
GTPBP10
MFSD11
METTL23
SRSF2
RASEF
AARS2
MRPL27
EME1
L3MBTL2
RHOB
NUP54
H2BC21
H2AC21
H2AC20
TEPSIN
NDUFAF8
CIC
GFM1
ACAD9
EIF4B
HOMER1
OAZ3
PPT1
SLC30A6
ACOX3
HSP90AB1
TRMT44
VAC14
SLC35B2
BMS1
MAML3
GINS1
ZFAND2A
SRPRA
HMGCR
CTDP1
NOLC1
FANCD2
DIABLO
ATP5IF1
SF3A3
ZNF17
ZCCHC3
C20orf96
CDKN1A
ADK
RPL5
RAD51AP1
C12orf4
NOL10
C9orf85
ABHD17B
CCDC97
COA6
BRAP
ACAD10
TMEM262
ZFPL1
CDCA5
KCTD5
PNRC2
SLC26A2
TMEM39A
POGLUT1
KDM4D
CWC15
PKLR
FDPS
SLC24A1
FAM133B
NUP42
SLC25A19
NABP1
TMEM167B
IARS1
TBC1D19
VCPKMT
NRDE2
RERE
LAS1L
FAM53C
CDC25C
MYBL2
TJAP1
UNK
H3-3B
EIF1
TMA7
CCDC51
ATRIP
RGS14
LMAN2
ALG10
NUP133
CCNH
MVD
CRBN
PSMD3
KLHL12
LANCL2
MARCHF8
NAT10
AAAS
PARL
NDUFV1
KRT80
YWHAQ
DHDDS
ATP9B
RARS2
ORC3
LRRC29
CLDN6
CLDN9
RFXANK
BORCS8-MEF2B
BORCS8
SRSF6
TANK
KAT7
TOMM40
TMEM126A
SKP1
UBR4
OXNAD1
DPH3
ERICH4
DMAC2
RBSN
UGP2
UQCC3
LBHD1
CSKMT
C11orf98
TMEM94
HNRNPL
TMEM190
TMEM238
RPL28
MRPL37
CYB5RL
SLIRP
ALKBH1
H4C2
H3C2
H2AC4
DOK3
DDX41
IL4I1
NUP62
ATF5
UHMK1
MRPL55
ZNF56
DR1
RPS11
RPL13A
SLC25A26
CRLS1
YPEL2
COPZ1
COMMD2
CHD4
CALR3
C19orf44
NUFIP2
TSNAXIP1
RANBP10
SLC25A3
CHCHD6
TIMM17A
LMOD1
TRAPPC8
ATF3
PPFIBP1
DDX50
PTEN
KLLN
TTC13
ARV1
MNAT1
ANKFY1
MRPS22
PSMB7
C16orf89
ALG1
FREM2
CLTCL1
CCT2
WDHD1
SOCS4
ZNF444
RPTOR
SRRD
HPS4
RETSAT
ELMOD3
TAF6
MBLAC1
CNPY4
SEPTIN4
MTMR4
PALB2
DCTN5
PCDH9
ATR
NUP107
NUF2
ADNP
MAP3K13
DDAH1
CCN1
MANF
RBM15B
CD68
EIF4A1
LOC100996842
MPDU1
SAP18
ZWINT
EIF4A3
PEX26
RCOR3
KCNIP2
TBC1D23
FBXO28
PTP4A1
INTS9
HMBOX1
THOC1
ATP6V1C1
HTRA2
DQX1
LEMD3
SACM1L
SKA2
PRR11
POLG
PACSIN2
BCAR3
NAA80
IFRD2
HYAL3
NDUFAF3
IMPDH2
DALRD3
UBALD2
PA2G4
RBM28
SCAF11
COX10
ZNF574
GRIK5
HDAC4
DNM1L
TMEM128
TMEM14A
DCAF10
H2BC5
H1-4
TDRKH
TIMM23
GID4
ATPAF2
ARF4
MIS12
DERL2
TRA2B
RAD52
ARL14EP
TEFM
TPR
ODR4
LARS2
SEL1L
SMPD4
MZT2B
MFSD1
GSPT1
HGS
ARL16
SRP9
SPTY2D1
FAM156A
FAM156B
METAP2
CBX5
HNRNPA1
PPP1R11
POLR1H
ASF1B
PTPN6
C12orf57
RIN1
BRMS1
B4GAT1
HMGCS1
CAT
MRPS15
PTPN4
NDUFB10
RPL3L
NOL11
GADD45G
METTL9
MRPS31
ERCC5
DCAF8
GMFB
MAN1A2
SCAMP3
FAM189B
NARF
CYBC1
NBPF1
PANK2
TMEM254
DCP1B
NDUFA12
UNKL
C16orf91
PERCC1
NME1
MTHFD2
CALR
RAD23A
FARSA
BTG1
TRUB1
SLC25A42
TIMM50
TNKS
ZNF77
KANSL2
ELOVL5
YEATS4
SMIM13
HSD17B12
ACSL3
TOX4
RAB2B
MRPL44
TCERG1
EIF5
RRBP1
OTUD5
ZBTB45
SLC27A5
NUS1
FAM76B
CEP57
AASDH
FAM126A
USP15
EPG5
MXI1
PPP1R10
MRPS18B
ATAT1
AAR2
TMPO
CREBL2
NSRP1
TRIP11
LGMN
KDM5B
RTN4IP1
QRSL1
ASH2L
TTC4
HUS1
COL23A1
THUMPD1
F11R
PKN2
XPO1
SYNGAP1
CUTA
PHF1
ADAT1
RAD18
RAB4B
MIA
ADARB1
COMMD1
CCT4
TCAIM
NDUFC2-KCTD14
NDUFC2
C6orf226
MPV17L2
LTO1
VDAC2
ERMARD
GTF2H2C_2
GTF2H2C
GOLGA3
ELF2
EEF2
TNPO1
THRAP3
DCAF1
SKIV2L
NELFE
ANKRD17
FAM227B
DTWD1
SARAF
MARK3
ATG16L1
CCDC130
PNP
PIP4P1
MRPS23
DDX19A
ATP5MC2
RPS20
ABRAXAS2