ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX728779 | THP-1
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◣ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

DCAF12
GNA15
MAMDC2
CD40
RLF
UBAP1
ZNF684
IPPK
ZMPSTE24
TMCO2
CAP1
MTMR9
CMIP
DEFA1B
DEFA1
MAP3K5
EXO5
CD33
PRSS3
CCAR2
C8orf58
TNFAIP8L2-SCNM1
TNFAIP8L2
SCNM1
LYSMD1
TMOD4
ITGB2
GRPEL2
ZFP69B
ZDHHC3
EXOSC7
ARL4D
SH3BP2
RPS19
GLRX
ALOX5AP
NCF2
LAMP1
ZNF696
SPATC1
NFYC
NLRP12
CAB39
NCF1
CD1C
IL1B
TEAD3
NDUFS2
ADAMTS4
WDR74
STX5
RXRA
LGALS8
RAB24
PRELID1
B4GALT3
TLE3
APOA2
FCER1G
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
PGK1
PGA4
GPBAR1
DUX4
PNP
PIP4P1
CSF1R
PGA3
WDFY3
PAQR8
TMEM45B
NLRP2
CEBPD
MTF2
AGTRAP
ZNF408
ARHGAP1
ZFP69
HBS1L
SETDB1
PPT1
ITLN1
YES1
ADGB
MTPN
LUZP6
FLI1
CD244
LILRB3
LILRA6
LILRB5
PSTPIP1
DEFA3
AXL
CDKN2C
FAF1
SLC38A10
URM1
VASP
VPS33B
AKR1A1
RNF149
TP53I11
TDRD9
ATP5MPL
TLE4
SDCCAG8
CEP170
STEAP4
SMAP2
PGA5
SNRNP200
NDRG1
PPP1R12C
ARHGEF12
FRG2
XRCC5
POMP
THEMIS2
ARHGAP30
ZNF227
SUN1
TESK2
MMACHC
MFSD2A
HSPA6
ACTN2
VCPIP1
C8orf44-SGK3
TIGD4
ARFIP1
IL7R
TDRD10
SHE
DENND3
STK36
RNF25
APPL2
RUBCNL
EXOSC3
MDM4
MEFV
FCAMR
LOC102724770
DGCR6
NUF2
RUNX1
FOXJ3
UXS1
CEACAM21
ITGAM
FAM207A
TMEM30A
TRIT1
VPS13C
IPCEF1
MRPS18C
HELQ
F11R
CCDC200
SREK1IP1
CWC27
KLHL33
PISD
VTA1
NMBR
DUSP7
TRPV4
MMP9
KRT36
KRT13
TTC14
CPLX1
FEM1A
CXCL8
CLIC5
RAB3IL1
AKR1C3
HDGF
MRPL24
NUBP1
ABT1
SASS6
CITED4
PRR5
KIF5C
CARD8
PPIH
PPIAL4F
PPIAL4E
PPIAL4D
SPDYE13
MSH6
SP140
SP110
NIBAN3
MIA3
KIFAP3
RASA1
MXD3
MED23
DOCK10
C4orf3
MED18
OAS3
IL16
GABRR2
SEC11A
HAUS6
TEP1
LCP2
OAS2
CES1
LCP1
PDCD2
RNPEP
SELENOH
MTRNR2L2
MSH3
DHFR
SEMA4C
OR52K2
TEKT2
ADPRS
UNC45B
NLE1
ARPC2
MED10
TRIM41
CD1A
CTDSP1
PIKFYVE
RPS9
GOLGA7
DOCK8
ZNF780A
ROPN1L
UBL7
PDF
NIP7
COG8
PALLD
KLF2
FCGR2B
USF1
TSTD1
RNASE10
KBTBD7
OTUD7B
UBXN8
PTTG1IP
C5AR2
EAPP
TSSC4
SCAF11
SLC12A6
RHEX
NUTM1
NOP10
NCSTN
COPA
COL9A2
SIGLEC11
TCF12
USP3
UBR7
GON7
NFATC3
CBWD5
CBWD3
CBWD6
RPL37A
FAM167A
ZNF56
BRIX1
LYN
ARID2
UCHL5
RO60
CD53
MTRNR2L8
INPP4B
C22orf34
UCKL1
DPYSL2
ELOF1
NAIP
B3GALNT2
TLR4
ZDHHC19
ID1
EPRS1
IFNGR1
UTP3
TNS1
TOMM34
STK4
NECAP2
IL1RN
INAVA
FCGR2A
ERMARD
MAP2K1
HIBCH
TMEM154
CHMP4B
GTPBP10
CTSB
C6orf89
CCDC149
FAM227B
DTWD1
EXT1
PIGM
SERPINB13
TMEM39A
POGLUT1
DBI
C2orf76
RMDN1
CPNE3
NAA80
IFRD2
HYAL3
KBTBD6
TNFAIP1
IFT20
MFN2
IFI16
CD79A
SDHC
MPZ
EIF2D
ZNF484
ARPC3
TFB2M
CNST
RMND1
ARMT1
DCAF10
CXCL1
TUBA8
PGBD4
EMC7
METTL18
C1orf112
TMEM53
ARMH1
YIF1B
KCNK6
RASSF5
ZNF622
DAP
DEFA4
MTFP1
ARHGEF1
GPR68
RPL37
CARD6
PA2G4
WDR70
NUP155
SUSD6
FASLG
TLN2
ZNF658
SCAMP2
ATP2B4
DDO
TMEM39B
CTSG
INTS9
HMBOX1
AP1B1
PDLIM2
ADGRE1
ZNF410
DENND4B
NDFIP2
HIGD2B
BBS4
XRN2
TIPRL
RAPGEF1
NR3C1
CMTR1
NOTCH1
MEF2C
TCTEX1D1
CCND3
SBNO2
TRIAP1
COX6A1
HM13
CHCHD5
PDXK
RGL1
ARPC5
ZP3
FRG2C
THYN1
ACAD8
MTMR14
SPDYE9
SPDYE8
SPDYE15
SPDYE11
HLA-DOA
SCRG1
TNIP1
TATDN3
NSL1
LRFN3
LYRM1
TBPL1
GPAA1
EXOSC4
MAPKAPK2
APOL6
MARCO
FBXO38
IPP
LILRA2
SKP2
LMBRD2
ALDOA
COL8A2
NUDCD1
ZNF226
MAP1S
HMGB1
USPL1
TMEM59
TCEANC2
SNAPC3
AOPEP
HK3
ZNF718
ZNF595
STAU1
S100A8
ITGA4
LAMB3
EIF3D
TPRKB
CFAP298-TCP10L
CFAP298
ZDHHC7
SLC22A16
MS4A3
GPIHBP1
NOTCH2
DAZAP2
DISC1
NOL11
CPNE5
DUSP6
ADAM10
SNRPC
TMEM231
ARHGEF10
SEPTIN9
PPIAL4H
PPIAL4G
TOMM20
MIDEAS
RGS12
LILRB4
PDE4DIP
PHIP
GALK2
COPS2
ZMAT2
HARS2
HARS1
MPL
LRRC29
TOR1AIP2
TOR1AIP1
ERLIN2
KCTD5
TAF11
ANKS1A
P2RY12
HEXA
SRSF11
LRRC40
MRPS23
ATG16L1
TMEM104
NAT9
TLE1
RNGTT
SDHAF3
FUCA1
AK2
SDHAF2
CPSF7
FCRL4
ALG10
LMNA
NME7
BLZF1
WNT10A
TOX2
IL6R
TBRG4
PRRG2
NOSIP
NSUN5
C1orf198
TPM3
MRPL2
KLC4
CUL7
TLE6
PTK2B
TRIM35
VIRMA
SCRN2
LRRC46
OSBPL7
TLE2
DPY19L3
CYB5R1
EIF2B3
TMIGD3
ADORA3
FCAR
PPP4R3A
ISY1-RAB43
ISY1
PRPF3
TFIP11
SNX3
OTULINL
THOC5
SORBS3
PKN2
KIF2C
DNAJC10
WDR86
KIAA0895L
EXOC3L1
E2F4
MAGEF1
SMARCA4
ELMO3
PLEC
PRAM1
TRIP4
PCLAF
GGPS1
ARID4B
FKBP1A
FAM200B
TACC1
FIGNL2
IRAK1BP1
RTF2
CCL22
SCAF1
RRAS
TPT1
ARHGEF3
TREM1
LYPLA2
GALE
TBL3
RPS2
RNF151
NOXO1
NMNAT1
LZIC
TMEM33
TPK1
TRIB3
CCL3L3
CCL3L1
JOSD2
ASPDH
WDR61
LMO2
VASH1
IKBKE
DCSTAMP
NDUFS3
KBTBD4
FAM180B
NCOA3
MOB4
DR1
PDPR
ZNF197
SAMHD1
TTC13
ARV1
ZWILCH
SNAPC5
RPL4
KLHL20
LTB
LST1
NCR3
OSCAR
NDUFA3
BOD1L1
RTCA
XRRA1
SPCS2
GADD45B
BCAS1
SRP9
MRPL3
ZNF614
WNK4
VPS25
PHB
SV2A
BOLA1
TATDN1
NDUFB9
MFSD10
ADORA1
GHRL
MTRNR2L1
STYXL1
SNX19
CNGA1
SLC8A1
PEX3
ADAT2
ZC3H3
DDX18
MTERF1
TBL2
CAVIN2
SLC34A1
RPS20
NAT10
CMPK2
RPS6KA2
NUS1
INTS12
GSTCD
ERI1
NUP133
MAP3K7CL
MYBL1
CCT8
ZNF668
ZNF646
CMKLR1
SLC35F6
SCML1
SSC4D
FBXO28
ATG5
STK38L
MAML2
C6orf47
APOM
FBF1
GPANK1
CSNK2B
PCM1
LY6G5B
LAMTOR5
TPST2
THAP9
SEC31A
NDUFA12
P3H1
CASS4
TOR1A
PPIL4
WASHC5
NSMCE2
CDKN1A
HEATR1
GPA33
ASXL2
CERS2
ANXA9
GPR88
RPL36
MICOS13
HSD11B1L
TMEM43
CHCHD4
TMX3
CCDC102B
NCF4
BID
DNAJC5B
MRPS35
RAB1A
FCGRT
ZNF398
HSPA13
ZNF425
TRIP11
LRRFIP1
TBC1D8B
TMEM222
ZFYVE1
GTF2H2
RAB44
CHMP7
PHACTR4
ZNF221
ZNF142
BCS1L
PPIE
DHDDS
ZNF350
DOK2
ORMDL3
GSDMB
CBWD1
NEK7
TRNP1
BIN2
SUCNR1
LILRA3
RGS18
ARHGAP18
GTF2H3
EIF2B1
AP2B1
PEX12
ZNF224
TRAPPC8
PRKCSH
CCDC151
POR
MYL5
ATP5ME
PHC2
DECR1
FPR2
FPR1
TMEM127
CIAO1
SLC35B4
MMUT
CENPQ
PIGF
CRIPT
AOAH
A2M
MR1
UNK
H3-3B
ABRAXAS2
EEF1AKMT2
GTF2H2C
GTF2H2C_2
SCAND1
SNUPN
WDR55
DND1
MFSD4B
RCSD1
TRIM25
CHMP5
BAG1
LRP3
PSMD3
SERPINB6
TAGAP
RPIA
ALG10B
UBE4A
RNF139
MAPKBP1
RPAP3
MTIF2
TAF1B
UBAP2L
C1orf43
RBM45
PDE11A
LMBR1
AHI1
SF3B1
TIMM10
SMTNL1
TCHP
MINDY3
CBFA2T3
LTBP2
RWDD1
SRPRA
NR1D1
BAZ1A
PLEKHO1
STK25
CCDC86
PPP1R8
RPL5
NECTIN4
SRFBP1
HMOX1
RAB27B
WNT2B
PGLYRP4
S100A9
CHPF2
ABCF2-H2BE1
ABCF2
RAD50
GNPAT
C1orf131
IBA57
BCL3
WIPF2
COX7A2
MAD2L1BP
GTPBP2
PSMD7
PDSS2
CEACAM4
WBP1
INO80B
ACSL3
ATG7
EPN1
LARS2
SPG11
MRPS14
FAM120B
TMEM121B
CD5L
NTAN1
SYK
CSF2RB
EDEM3
PBK
CIITA
TNFSF10
SYMPK
FOXA3
PPP6C
GNAL
PRR22
DUS3L
CHMP1B
TERF2
TNPO1
ARL4A
MS4A7
TMTC3
CEP290
SEMA4B
PARP10
GRINA
RPS6KB2
PTPRCAP
RPL27A
PTPN4
PPME1
C2CD3
KIZ
ZFAT
CAPG
TLN1
CREB3
PUM1
ZNF697
MYCL
VIT
VPS26C
CASP8AP2
MDN1
CLK2
SLC24A1
SNAP47
JMJD4
COX5B
CYRIB
LY6E
CCDC182
TIMM21
FBXO15
CLPP
LATS1
SLC30A5
DCP1A
SESN1
TPR
ODR4
CEP57L1
WDR7
NCKAP1L
THEM4
HIP1
ICAM1
GIMAP6
ZNF337
PRCC
MAGOH
GET4
TTYH2
RPL38
CDCA8
C1orf109
ATP6V1C1
TBC1D23
CCDC30
ZMYND12
PPCS
KPNA5
OTUD6B
NLRP3
NKIRAS1
RPL15
ZNF225
NFKBIL1
DDX39B
ATP6V1G2
YTHDF2
C1orf74
STK10
SUCLA2
CYB5B
RASA3
IL10RB
ZNF3
COPS6
ERCC6L2
NPRL2
TMEM115
CYB561D2
WDR43
TOMM40
ADAR
PHLPP1
PIGBOS1
PIGB
DBN1
DAGLA
DCANP1
TIFAB
OR4D9
OR4D11
AGGF1
ARHGAP42
HLA-DMA
HLA-DMB
ARID3B
N4BP2L2
DCUN1D3
WDR27
C6orf120
PEX19
NCALD
LPAR5
ACRBP
PRKCB
SDSL
BATF
TAF12
ZNF444
METTL9
DMAC1
UBLCP1
RAB10
ATP13A2
HAX1
ZNF318
ZNF513
SNX17
EIF2B4
RANBP3
SRSF4
TADA1
DAB2IP
FCGR3A
VSIR
GYPC
PAFAH2
TSN
BOD1
ETNK1
GNAI2
ANXA2R
SH2B3
SLC33A1
RPL27
IFI35
PHRF1
PICALM
CLASP1
CD48
CHRNA9
ATP1A4
ZNF212