ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5255097 | 293
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◣ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

MAMDC2
MTRNR2L2
MSH3
DHFR
MTRNR2L8
DUX4
MTRNR2L1
MTRNR2L9
FRG2C
LOC102724770
DGCR6
KIF5C
WDR74
STX5
MUC3A
TRIM48
SNX16
RGPD1
RGPD2
FRG2
MLLT1
CCDC200
COL23A1
ZNF285
DDX23
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
UNK
H3-3B
MTF2
NAA80
IFRD2
HYAL3
TBL3
RPS2
RNF151
HEXIM2
LAMP1
CCNL1
CTNNB1
NOXO1
ZC3H6
FEM1A
CLTC
ARL4D
DSTYK
CDCA3
PDE6D
COPS7B
CHPF2
ABCF2-H2BE1
ABCF2
CALR3
C19orf44
EIF2D
STX18
TMEM41A
TIMM21
FBXO15
LAT
NCBP2AS2
NCBP2
BRWD1
MRPL21
IGHMBP2
EAPP
CKS2
UCKL1
SECISBP2
SPNS1
CALM3
TSNAXIP1
ATAD2
RANBP10
UBC
KMT5B
PPP5D1
PPRC1
DCP1A
NOTCH2
SOD2
GSPT1
PAFAH2
TMEM11
POLR2J3
WDR53
FBXO45
HMGB1
NPRL2
WTAP
TMEM199
SEBOX
POLDIP2
GTF3C5
TMEM115
CYB561D2
TMEM222
HDGF
SPATC1L
ARHGAP35
AP2S1
GATB
FOXJ3
HEXA
CLPB
RASSF1
RBL1
CALM1
OPA1
DOHH
SSNA1
ANAPC2
CALR
TOMM22
CCDC88A
TSN
MRM3
GLOD4
SLC39A1
CREB3L4
NDUFS7
SEC13
CYCS
TCF3
ZSCAN22
MRTO4
EMC1
LRP6
SCGB1C2
SCGB1C1
ODF3
UNKL
ORMDL3
GSDMB
NMNAT1
LZIC
TIMM22
CALM2
AURKAIP1
ZNF517
ZNF34
RPL8
COPS8
FZR1
KBTBD7
UBB
NUP214
H4C14
H3C15
H3C14
NOP14
GRK4
CCDC77
GPBAR1
H2AC19
H2AC18
BTRC
SMN2
SMN1
CNOT1
NDUFS3
KBTBD4
FAM180B
KMT2D
C16orf91
PEMT
TRIP4
PCLAF
STX16
B4GALNT3
CRTC2
RHEBL1
CFAP410
ST3GAL2
TESK2
MMACHC
ZNF337
SCAF1
RRAS
POMZP3
MED23
SYMPK
FOXA3
CHMP4B
TNFAIP8L2-SCNM1
TNFAIP8L2
TMEM262
CTDP1
KPNB1
IPO11
DIMT1
BOD1
MTERF4
RPS3
MRPL24
ZNF513
SNX17
EIF2B4
WASHC2C
PNKD
H4C15
PHB
PSMD3
IST1
PRCC
TSSC4
AHCYL2
RPS20
AAMP
UBE2B
CDKL3
PEX3
ADAT2
DDIT4
ING3
ZBTB45
RAD23A
TOB2
TCEA2
PA2G4
DEXI
CLEC16A
ADPGK
HTRA2
DQX1
RPL36
MICOS13
HSD11B1L
GTF2H3
EIF2B1
GSTA4
PHIP
ZFAND2A
ZNF212
WASHC2A
SMPD3
PEX26
NAGPA
THRAP3
KCTD9
CDCA2
DYRK1B
UBE2T
PPP1R12B
ZMYND10
RPL22
RNF207
KBTBD6
EIF4A2
RPS6KB2
PTPRCAP
MAF1
CYC1
NUDCD1
TSC1
GFI1B
TTC13
ARV1
PERCC1
FRA10AC1
PARL
ARHGEF12
ZNF789
TRIAP1
COX6A1
ATP5MF-PTCD1
ATP5MF
OSCAR
NDUFA3
RPL18A
NUF2
PKM
MED15
H2AX
DPAGT1
USP30
ZNF721
PIGG
KDM5A
TAF12
UBE2D3
MCM7
AP4M1
ZCCHC4
VARS2
GTF2H4
NXF1
RPS28
NDUFA7
ATG14
ZKSCAN2
FAM207A
TMEM127
CIAO1
OAZ3
SCNM1
LYSMD1
SLC27A5
KCTD5
USPL1
INVS
ERP44
MAD2L1BP
GTPBP2
WDR97
TMOD4
H2BC21
H2AC21
H2AC20
SLC9A1
C8orf33
MRPL20
CCNL2
RPIA
PANK4
HES5
SCRIB
ZNF444
FAM53C
CDC25C
GPAM
PPP1R12C
GABARAP
DNAJC11
RPS26
WDPCP
MDH1
RNASEH2C
KAT5
DUS2
DPEP2NB
DDX28
FUS
MAIP1
PTPN6
C12orf57
DIP2A
TRAPPC3
MAP7D1
KDM4B
TMTC3
CEP290
ZW10
CLDN25
TNFAIP1
IFT20
TMEM79
SMG5
CYP51A1
SLC35B4
CLP1
RANGAP1
UBR2
ATXN2L
FARSA
MFN2
MAPKAPK5
BRIX1
ZNF718
MRPS15
MRPS16
DNAJC9
MXD4
RBM42
C1orf159
SRSF11
INTS9
HMBOX1
CORO7-PAM16
CORO7
DNAJA3
ZC3H10
RPL41
ALKBH3
CCAR2
C8orf58
ADNP
LRRC29
ZNF384
ZNF56
NUP153
PEX14
UBQLN1
TBRG4
PGBD4
EMC7
PCID2
KAT7
CUL4A
WBP1
RLF
BANP
DFFA
PINX1
RPS5
ZNF595
C6orf47
APOM
ABRAXAS2
INO80B
VCP
FANCG
MRI1
C19orf53
EEF1AKMT2
PSMD11
CHD2
COMMD1
FBXW11
MRPS35
BOD1L1
SLC25A19
UBE2Q1
CHRNB2
PSMF1
NKIRAS1
NMT1
DCAKD
UBQLN4
RAB25
LAMTOR2
HMGCL
CCT4
MDM4
GHITM
TAF5
NME1
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
ZFYVE1
NSFL1C
GID4
ATPAF2
CCDC146
NOC4L
DDX51
SPRYD4
PBLD
HNRNPH3
CLDN6
TRIP12
FBXO36
LRRC40
TMEM70
ELOC
STK25
RBM15B
MANF
DPP9
RIC8B
LUC7L
FAM234A
AP2M1
RPLP0
GCN1
VPS37A
CNOT7
SPATA25
NEURL2
CTSA
H4C12
TTC33
DOLPP1
TOR1AIP2
TOR1AIP1
TMEM88
ENDOV
RPL15
PHF23
DVL2
CIC
SPTLC1
ZGPAT
ARFRP1
SP2
SLC33A1
ZNF420
PRR5L
ZSWIM1
CDKN2C
PIGU
ZFYVE19
DNAJC17
AHCTF1
CHCHD1
ACOX3
NTAN1
COMMD9
FBF1
UCHL5
RO60
TEPSIN
NDUFAF8
CSRNP2
SV2A
HNRNPAB
SUPT5H
RPS16
RCL1
CRBN
RBM6
IDH3B
TCF12
SEPTIN9
CANT1
BIRC5
DNAJB12
MRPL58
RPL29
LETM1
STAU1
SUFU
ACTR1A
EIF3F
GDE1
DCAF10
CCP110
PYCR3
GFUS
PHF12
LONP1
CATSPERD
HMBS
MTMR2
MON1A
TFPT
PRPF31
HSP90AB1
RALBP1
TRMT44
SUPV3L1
SMARCAL1
PIK3R3
ARF4
MFSD11
HSP90B1
SNAPC3
SART1
COQ9
CIAPIN1
ZSWIM8
NDUFV1
ZFPL1
CDCA5
UBL7
COG2
DDX49
COPE
HSPA5
TMA7
CCDC51
ATRIP
GTF2I
PHF13
P2RY11
DNM1L
PKLR
FDPS
JOSD2
ASPDH
RPL12
LRSAM1
CTU1
ARHGAP9
RCOR1
ZNF749
SNRNP70
MARS1
EMILIN1
RAB5C
H2BC5
H1-4
DDX1
FAM166A
TSC2
NTHL1
WASHC5
NSMCE2
SNX1
CIAO2A
MYBL2
SSBP1
DCAF8
MRPL39
BOLA1
DCAF1
DESI2
H4C11
U2AF1L5
U2AF1
TRAF7
RAB26
WAPL
TMEM59
TCEANC2
FBXL12
CAND1
PRSS22
METTL9
GABPB1
STPG3
IP6K2
CBWD5
TNFRSF12A
THOC6
HCFC1R1
TMEM242
TRAK2
STRADB
CHCHD3
RWDD1
PNRC1
SOX6
C11orf58
PIK3IP1
RPS7
B3GALNT2
TOP3B
OST4
NLK
TLE3
SF3A3
FBXO46
CBWD3
METTL25
CCDC59
VCPIP1
C8orf44-SGK3
CD68
ESYT1
ODF3L2
MADCAM1
ZFAT
PCNA
BICD2
TMEM230
COX7C
ZFYVE28
TMED9
B4GALT7
SLC7A6OS
PRMT7
PSMD2
MCU
METTL23
PDE4DIP
CFAP99
WDR87
SIPA1L3
TRMT61B
POLG
POLG2
DDX5
CEP95
TTC4
PTEN
KLLN
SLC3A2
POLR2E
THYN1
ACAD8
ZNF500
TEKT2
ADPRS
FAM228B
GPX4
PABPC1
BCKDK
SRSF1
PRKACA
SERBP1
USP48
SKIV2L
NELFE
NEK8
GUSB
SRSF2
TARBP2
MAP3K12
SLC24A1
ATF4
PIH1D1
ALDH16A1
SMIM13
SIRT2
NFKBIB
ZC3H3
PLEKHM3
SSR3
CAPN10
CMTR1
SLC4A2
CDK5
RPLP1
PSME3
BECN1
NPFF
BRF2
IPPK
FAM149B1
ECD
ZNF148
UBE3B
KCTD10
PSMD4
TIMM13
NDUFB5
MRPL47
CCDC90B
ASIC3
RPS19
SRRD
HPS4
NOLC1
GFM1
KAT8
COQ7
NOP53
TRUB1
MYLK4
MUS81
CFL1
RUVBL1
TMEM217
TBC1D22B
SLX1B
SLX1A
BOLA2B
BOLA2
SESN1
VIRMA
UBA52
H3C13
H2BC18
CTF1
BCL7C
DPY19L4
ASXL1
COA6
EIF4A1
RFXANK
BORCS8-MEF2B
BORCS8
KDM4A
PCBP2
STAT1
CDKN2AIPNL
FAF1
TMEM39A
POGLUT1
CFAP20
HAGH
FAHD1
COPS7A
BUB3
NDUFAB1
LARS1
NDUFB10
SRP68
TFRC
REXO1
CACTIN
WBP2
SF3B2
GAL3ST3
PARK7
HMX2
PPAN-P2RY11
PPAN
ANGPTL6
SPRED1
RPL3L
WNK1
RPL23A
TLCD1
KPTN
EEF2
RAB34
RCOR3
SHC1
BUB1B
RAB13
YPEL4
XRRA1
SPCS2
PHAX
ALDH7A1
WRNIP1
ZACN
GALR2
SULT1A4
SULT1A3
ACTRT3
KMT2B
ZER1
H2BC15
H2AC15
PTDSS2
ANO9
CBWD6
NDUFB8
HIF1AN
PI4K2A
MORN4
PHB2
TACO1
EMP3
CCDC114
WDR25
WARS1
TMEM109
PRPF19
PALB2
DCTN5
CWC25
GPANK1
CSNK2B
ACSL3
ZNF518A
TSFM
RANBP2
SUMF1
MRPS11
MRPL46
TDG
C12orf73
EEF1AKMT3
EEF1A1
ZNF225
TIGD6
HMGXB3
USP15
C5orf51
KHK
UBN1
GLYR1
BMS1
XPOT
RPP30
SMIM12
RERE
PROCA1
MEIOSIN
DBNDD2
NOL10
CHCHD6
SNRPD3
GUCD1
SEC11C
ZNF514
ZNF2
ZNF189
MRPL50
CEP350
TEFM
CCDC150
EIF2S2
RPL3
OAZ1
FBXO24
POLR3D
GTF2H2C
GTF2H2C_2
RTF2
SPHK2
RPL18
FBXO28
FAM83E
CDK8
VPS33A
C12orf43
FASTKD1
WDR4
ZWILCH
SNAPC5
RPL4
TATDN3
NSL1
PTBP1
NDUFS2
ADAMTS4
FAM156A
SEC61A1
H2BC14
H2AC14
LRCH4
ZNF451
SELENOH
L3MBTL2
NCDN
KIAA0319L
SUGP1
MAU2
PNKP
AKT1S1
SCRT1
DGAT1
SLC25A10
MRPL12
FAM156B
PEPD
CCDC124
RAB1A
NABP1
ZNF527
PANK3
HIRIP3
MRPL3
GET3
C19orf48
INTS1
TOP2B
TOP3A
SMCR8
PPIA
SFSWAP
MRPL48
CNPY2
GPR15
CLDND1
IPO7
PCNP
CNIH4
TMEM69
GPBP1L1
CCDC86
PPP6C
COMMD2
CAPN15
RTTN
RASEF
TTBK1
GSC2
AP5Z1
ZNF805
AURKC
RPL6
PTPN11
HNRNPL
MRPS23
UBAC1
AKIRIN2
DBP
FANCD2
CNOT4
SPRYD3
DDX46
ZNF133
SRPRA
SCAMP4
ADAT3
TBC1D17
RPS3A
STMN3
RTEL1
SCAMP3
FAM189B
TIMM50
MOGS
ATP5PO
SNAP47
JMJD4
TOR1A
BOLA2-SMG1P6
SDE2
EIF1
ZNF335
CA11
CASC3
FUT11
MAPK11
GATAD2A
TP53I3
SF3B6
MRPL55
USP42
USP35
KCTD21
PKN2
MAGOH
SEL1L
HBS1L
RBSN
SURF6
EIF2B5
TBC1D22A
LRFN3
FAM133B
TMEM258
FEN1
CCNC
CCNI
CDK5RAP1
MAEA
GNAL
ZBTB4
SLC35G6
POLR2A