ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX535454 | A-375
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◣ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

WDR74
STX5
DUX4
EAPP
GSTA4
MAMDC2
COL23A1
FRA10AC1
STX16
MTRNR2L2
MSH3
DHFR
KIF5C
SEMA6A
LIMK1
PHC2
FAM98B
MTRNR2L8
DRG2
DCAF10
TATDN3
NSL1
SMARCD2
MTRNR2L1
GBA
EXD1
CHP1
HPCAL1
ZNF207
C17orf75
FAM227B
DTWD1
H4C14
H3C15
H3C14
H2AC19
H2AC18
ADAMTS9
IER3
FLOT1
STX18
TPT1
CDK5RAP1
WDR36
IST1
TRPV2
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
SLC5A3
MRPS6
RGPD1
RGPD2
MAN2C1
RAD54L2
TACO1
NUF2
PCID2
CUL4A
BNIP1
DCP1A
ANKRD40
DPY19L4
TRIP4
PCLAF
ZC3HC1
MTF2
DSTYK
NME1
LRRC37A3
INTS12
GSTCD
INPP5F
TMEM242
TAF12
STX3
WDR31
BSPRY
H2BC21
H2AC21
H2AC20
COMMD2
AURKAIP1
H4C15
RBBP5
FCGR2A
SAR1B
SLC24A1
TMEM256
NLGN2
TPRKB
STAT6
H4C12
H4C11
H2BC14
H2AC14
SIRT4
EIF2D
ANP32E
NKIRAS1
RPL15
TTC4
SLC9A1
SF3A3
SLC25A51
LRATD2
CTNNB1
PLEKHM3
NFE2L2
TEFM
FAM180B
NDUFS3
KBTBD4
H2BC15
H2AC15
TEX46
KDM1A
NDUFC2-KCTD14
NDUFC2
PSMD1
PDE4DIP
ERCC1
H4C3
H1-6
NDUFS7
RAB13
GTF2H2
RPS27
MTBP
MRPL13
ACOT7
KANK1
SIT1
ATXN7L2
CYB561D1
CCDC107
ARHGEF39
ACBD6
SPRY4
SLC20A1
PEX3
ADAT2
H3C13
H2BC18
TTC26
PHLDA1
TOMM5
LAMP1
ZMPSTE24
S100A4
S100A5
S100A6
SERPINE2
HMGB1
USPL1
TMEM107
DMAP1
RPS6KA1
HEXIM2
MRPL40
HIRA
VPS45
ASB6
NMNAT1
LZIC
SMG8
DDIT4
PIGC
C1orf105
ZNF827
LSM5
AVL9
RBM28
PIGL
NCOR1
WWOX
AMOTL1
POLR3B
TARS2
XPA
TOR1AIP2
TOR1AIP1
RPS6
RASSF5
PTPRH
WDR70
NUP155
BHLHE40
FRG2C
RPL37
CARD6
ID1
TUBGCP3
NR1H3
ACP2
ANAPC5
NPM1
CCNL1
JUNB
ADNP
DRAP1
C11orf68
ZBTB45
SLC27A5
RPL3
JRK
BTF3
FXYD3
RRP15
ALKBH3
TMEM190
TMEM238
RPL28
ZER1
SRGAP2B
SRGAP2C
USP30
RPS5
MRPL39
CBX5
HNRNPA1
WNK4
VPS25
DTX2
PARP16
E2F6
OPA1
FBXW11
ZNF609
FAM228B
TP53I3
SF3B6
SNRPE
DNAJC25-GNG10
DNAJC25
CT45A10
KCTD5
COX16
LDAH
H4C9
H2BC11
H2AC11
GRAMD1C
KCNMA1
TFAP2B
RPL9
LIAS
SELENOH
LIG4
ABHD13
AARSD1
SNTB1
EEF1A1
SLC35A3
NUFIP2
PDE8A
NFATC2IP
SSBP2
SAAL1
PROB1
GFOD2
SPATA24
B3GNT7
SOD2
WTAP
P2RY11
RCOR3
EIF3G
RFXANK
BORCS8-MEF2B
BORCS8
POLR2C
ARL14EP
BTG1
NOTCH2
ZNFX1
DR1
FEM1B
PRKCE
ZNF460
G3BP1
ITGB3BP
EFCAB7
BCL3
SS18
MTERF4
MRPS23
MBTPS2
RPS27A
CLHC1
SLC6A15
RPS3
MTOR
TEX9
S100A2
RFX7
RPS20
NSUN4
PTCD1
CPSF4
OTUD7B
NR4A1
ABHD14B
ABHD14A-ACY1
ABHD14A
ACY1
CLTC
RICTOR
FCRLB
SOX5
SSBP1
TMCO2
RPS9
SNRPB2
TSEN34
ABHD12
RPL11
DUSP7
NNMT
MRPL21
IGHMBP2
PLXNA1
SNRNP70
COQ8A
BFSP1
TUBB3
MC1R
ERCC6L2
PPP6R1
MPG
RHBDF1
MTMR2
ZSCAN30
SLC44A1
CGGBP1
ATP5MC2
C3orf38
ACBD3
GTF3C6
KCTD3
MRPL1
H4C6
H1-3
H3C6
NCSTN
COPA
CT45A7
AGMO
SAGE1
MRPL24
CDKN2AIPNL
RBM45
PDE11A
H3-2
CCDC200
PTPN6
C12orf57
FRG2
R3HDM2
INHBC
LOXL4
CDCA4
UCHL5
RO60
MTAP
H3C10
H2BC13
H2AC13
BCL9
PYROXD2
BOD1L1
POLDIP3
DNAJC14
SECISBP2L
TYRO3
NDUFA9
AKAP3
STAT3
SH2B3
PDZD9
MOSMO
PSCA
SLC1A4
ZNF76
STARD13
SERPINA3
PGBD2
PTPRG
SEC13
KIF22
UCN2
PFKFB4
MIS12
DERL2
TOMM20
ADGRL1
LOC100509620
WDR11
C16orf89
ALG1
POLR3F
DZANK1
WWTR1
CSRP1
MOGS
MRPL53
MRPL48
QSOX1
H2BC5
H1-4
SQSTM1
RPL32
DDX23
LOC102724770
DGCR6
UNK
H3-3B
NAA80
IFRD2
HYAL3
TBL3
RPS2
RNF151
KMT5B
NOXO1
ZC3H6
FEM1A
ARL4D
PDE6D
COPS7B
CDCA3
CHPF2
ABCF2-H2BE1
ABCF2
CALR3
C19orf44
TMEM41A
BRWD1
TIMM21
FBXO15
UBC
LAT
NCBP2AS2
NCBP2
CKS2
UCKL1
SECISBP2
ATAD2
SPNS1
CALM3
TSNAXIP1
PPP5D1
RANBP10
PPRC1
PAFAH2
GSPT1
POLR2J3
TMEM11
WDR53
FBXO45
GTF3C5
TMEM199
SEBOX
POLDIP2
NPRL2
HDGF
TMEM222
TMEM115
CYB561D2
SPATC1L
ARHGAP35
CALM1
AP2S1
GATB
FOXJ3
HEXA
CALR
CLPB
RASSF1
SSNA1
ANAPC2
RBL1
CCDC88A
TSN
DOHH
TOMM22
CALM2
MRM3
LRP6
GLOD4
SLC39A1
CREB3L4
CYCS
TCF3
ZSCAN22
MRTO4
EMC1
SCGB1C2
SCGB1C1
ODF3
UNKL
ORMDL3
GSDMB
TIMM22
ZNF517
ZNF34
RPL8
COPS8
FZR1
KBTBD7
CCDC77
UBB
NUP214
NOP14
GRK4
KMT2D
SMN2
SMN1
GPBAR1
BTRC
TMEM262
CNOT1
C16orf91
PEMT
RHEBL1
MED23
TNFAIP8L2-SCNM1
TNFAIP8L2
CFAP410
B4GALNT3
CRTC2
KPNB1
ST3GAL2
POMZP3
TESK2
MMACHC
ZNF337
SCAF1
RRAS
SYMPK
FOXA3
CHMP4B
CTDP1
IPO11
DIMT1
BOD1
ZNF513
SNX17
EIF2B4
WASHC2C
PNKD
PHB
TSSC4
PSMD3
TOB2
PRCC
AHCYL2
UBE2B
CDKL3
RAD23A
AAMP
ING3
PHIP
TSC1
GFI1B
TCEA2
HTRA2
DQX1
PA2G4
GTF2H3
EIF2B1
DEXI
CLEC16A
ADPGK
RPL36
MICOS13
HSD11B1L
ZFAND2A
ZNF212
WASHC2A
SMPD3
EIF4A2
PEX26
ARHGEF12
NAGPA
THRAP3
KCTD9
CDCA2
MAF1
CYC1
DYRK1B
UBE2T
PPP1R12B
PKM
ZMYND10
RPL22
RNF207
KBTBD6
RPL18A
RPS6KB2
ZNF789
ATP5MF-PTCD1
ATP5MF
PTPRCAP
KDM5A
H2AX
DPAGT1
NUDCD1
TTC13
ARV1
PERCC1
PARL
TRIAP1
COX6A1
OSCAR
NDUFA3
ZCCHC4
UBE2D3
VARS2
GTF2H4
ZKSCAN2
MED15
ZNF721
PIGG
FAM207A
NXF1
MCM7
AP4M1
SCNM1
LYSMD1
RPS28
NDUFA7
ATG14
OAZ3
WDR97
TMEM127
CIAO1
MAD2L1BP
GTPBP2
TMOD4
INVS
ERP44
SCRIB
C8orf33
MRPL20
CCNL2
RPIA
PANK4
HES5
FAM53C
CDC25C
ZNF444
ZNF718
WDPCP
MDH1
FUS
GPAM
MAIP1
PPP1R12C
GABARAP
DNAJC11
RPS26
RNASEH2C
KAT5
DIP2A
KDM4B
DUS2
DPEP2NB
DDX28
C1orf159
FARSA
TRAPPC3
MAP7D1
TMTC3
CEP290
ZW10
CLDN25
TNFAIP1
IFT20
CCAR2
C8orf58
TMEM79
SMG5
MFN2
CYP51A1
MRPS16
DNAJC9
BRIX1
SLC35B4
MAPKAPK5
CLP1
ZNF595
MRPS15
ZNF384
RANGAP1
UBR2
ATXN2L
MXD4
RBM42
SRSF11
ZC3H10
RPL41
INTS9
HMBOX1
CORO7-PAM16
CORO7
DNAJA3
UBQLN1
LRRC29
TBRG4
ZNF56
NUP153
BANP
PEX14
RLF
PSMF1
WBP1
PGBD4
EMC7
C6orf47
APOM
VCP
FANCG
KAT7
CHD2
DFFA
COMMD1
PINX1
INO80B
ABRAXAS2
MDM4
MRI1
C19orf53
EEF1AKMT2
PSMD11
MRPS35
CCT4
SLC25A19
UBE2Q1
CHRNB2
MANF
NMT1
DCAKD
UBQLN4
RAB25
LAMTOR2
NSFL1C
TAF5
HMGCL
GHITM
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
ZFYVE1
TRIP12
FBXO36
RBM15B
PBLD
HNRNPH3
GID4
ATPAF2
CCDC146
STK25
NOC4L
DDX51
SPRYD4
CLDN6
LRRC40
TMEM70
ELOC
DPP9
VPS37A
CNOT7
RIC8B
PRR5L
LUC7L
FAM234A
AP2M1
RPLP0
GCN1
SPATA25
NEURL2
CTSA
TTC33
DOLPP1
TMEM88
ENDOV
PHF23
DVL2
CIC
SPTLC1
TEPSIN
NDUFAF8
ZGPAT
ARFRP1
SP2
SLC33A1
SEPTIN9
ZNF420
CHCHD1
ZSWIM1
CDKN2C
PIGU
ZFYVE19
DNAJC17
AHCTF1
HNRNPAB
ACOX3
NTAN1
COMMD9
FBF1
TCF12
MRPL58
CSRNP2
EIF3F
SV2A
RPL29
SUPT5H
RPS16
RCL1
CRBN
HMBS
RBM6
IDH3B
LETM1
CANT1
BIRC5
PYCR3
GFUS
DNAJB12
STAU1
SUFU
ACTR1A
FAM166A
EMILIN1
GDE1
CCP110
MFSD11
PHF12
LONP1
CATSPERD
MON1A
TFPT
PRPF31
HSP90AB1
ARF4
RALBP1
TRMT44
SUPV3L1
SNAPC3
HSPA5
SMARCAL1
PIK3R3
HSP90B1
DDX1
SART1
COQ9
CIAPIN1
ZSWIM8
STPG3
NDUFV1
RPL12
LRSAM1
ZFPL1
CDCA5
UBL7
COG2
DDX49
COPE
TMA7
CCDC51
ATRIP
GTF2I
PHF13
RCOR1
DNM1L
PKLR
FDPS
JOSD2
ASPDH
CTU1
ARHGAP9
ZNF749
TRAF7
DCAF8
MARS1
OST4
RAB5C
PNRC1
TSC2
NTHL1
TMED9
B4GALT7
WASHC5
NSMCE2
SNX1
CIAO2A
GABPB1
MYBL2
DESI2
PRSS22
TOP3B
BOLA1
RPS7
DCAF1
ODF3L2
MADCAM1
U2AF1L5
U2AF1
RAB26
METTL9
CBWD5
WAPL
TMEM59
TCEANC2
FBXL12
CAND1
IP6K2
TNFRSF12A
THOC6
HCFC1R1
TRAK2
STRADB
CHCHD3
RWDD1
CBWD3
ZFYVE28
CD68
SOX6
C11orf58
PIK3IP1
B3GALNT2
ZFAT
CFAP99
NLK
TLE3
FBXO46
METTL25
CCDC59
VCPIP1
C8orf44-SGK3
PCNA
TMEM230
ESYT1
PTEN
KLLN
POLR2E
BICD2
COX7C
ATF4
SLC7A6OS
PRMT7
GPX4
POLG
POLG2
DDX5
CEP95
PSMD2
MCU
METTL23
TEKT2
ADPRS
WDR87
SIPA1L3
SLC3A2
TRMT61B
SRSF2
SRSF1
SKIV2L
NELFE
THYN1
ACAD8
ZNF500
IPPK
PABPC1
BCKDK
BRF2
PRKACA
RPS19
SERBP1
USP48
NEK8
GUSB
TARBP2
MAP3K12
PIH1D1
ALDH16A1
SMIM13
RPLP1
SIRT2
NFKBIB
ZC3H3
SSR3
CAPN10
CMTR1
SLC4A2
CDK5
PSME3
BECN1
NPFF