ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX7366779 | MCF-7
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◣ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

EIF5AL1
UBB
GTF3C5
TUBA1B
TUBA1A
HSPA5
RNF169
TUBB
MDC1
RBBP9
SEC23B
GSTA4
SERBP1
PCNP
HMGB1
H2BU1
H2AW
GPX1
EEF1A1
TUBA1C
PABPC3
UNK
H3-3B
TBCA
GNMT
STPG4
SLC25A5
POLG2
DDX5
CEP95
HNRNPF
HLA-E
RPS29
HNRNPA2B1
CBX3
PCBP1
DSE
TSPYL4
HNRNPA3
EHD1
FAM166A
STPG3
TUBB4B
CHD1L
PRKAB2
ISY1-RAB43
ISY1
EYA3
NEMF
DUX4
NKIRAS1
RPL15
SMOC1
UBC
HSPA8
PARP2
WWP2
NOB1
CCNB1IP1
H4C14
H3C15
H3C14
H2AC19
H2AC18
KLF17
PTMA
CDON
EFCAB10
PABPC1
H2AZ1
DNAJB14
CYBRD1
CDH12
PHB
ARF6
GLUD2
H2BC21
H2AC21
H2AC20
ZNF286A
POLB
RPL21
ACTG1
DLK1
H4C15
SLC5A1
TUBA4B
TUBA4A
STK16
GLB1L
GABBR1
ACTB
H3-5
DVL3
ABLIM1
ART1
H1-2
MARCKS
ANP32C
SUGT1
SLC13A2
SLC25A4
ARL4D
H4C12
H2BC15
H2AC15
ZNF564
KRBOX4
SERF2
SERINC4
HYPK
MFSD2A
EAPP
SRSF1
CSNK1A1L
FCRL3
SIT1
CCDC107
ARHGEF39
UBQLN2
DUSP13
EIF2S3B
GAPDH
H2AX
DPAGT1
HMBS
SRSF5
TBC1D28
EVL
EIF4A2
YWHAQ
CSNK2A3
PGRMC1
H3C13
H2BC18
H4C4
H2BC6
ZNF485
WDR74
STX5
UBR1
CCDC200
H4C3
H1-6
GJB1
TUBB2B
TOB2
ZNF217
VIM
TRIM27
NAPEPLD
ZBTB4
SLC35G6
POLR2A
COQ3
PRRC1
GDA
GSPT2
CNTF
RBMXL1
KYAT3
KRT8
KRT18
NPC2
FRG2C
HEXIM1
TAF12
H4C11
SAXO1
RRAGA
MAT2A
H4C9
H2BC12
H2AC12
MAF
H4C6
H1-3
H3C6
DDIT4
DEGS1
HNRNPH2
GLA
MDM4
H2BC11
H2AC11
HNRNPUL1
H3C4
H2AC7
H4C5
H2BC7
FLYWCH1
SIRT4
APPBP2
ZMYND8
KRT19
KRT15
TUBD1
RPS6KB1
ZMYM5
NEK7
TUBB2A
TFRC
IER3
FLOT1
H2BC5
H1-4
TRIM33
SPTSSB
H4C13
H3C11
H2AC16
H1-5
KMT2E
SEMA4C
PCIF1
ZBTB25
ZBTB1
GABPB1
XBP1
RPRD2
HSPB1
TOB1
RHOB
NCOA3
PIGV
HNRNPAB
BBC3
SLC38A2
MAMDC2
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
DDX23
LOC102724770
DGCR6
MTF2
NAA80
IFRD2
HYAL3
HEXIM2
TBL3
RPS2
RNF151
LAMP1
KMT5B
CCNL1
CTNNB1
NOXO1
CLTC
ZC3H6
FEM1A
DSTYK
PDE6D
COPS7B
CDCA3
EIF2D
CHPF2
ABCF2-H2BE1
ABCF2
CALR3
C19orf44
STX18
TMEM41A
BRWD1
TIMM21
FBXO15
LAT
NCBP2AS2
NCBP2
MRPL21
IGHMBP2
CKS2
UCKL1
SECISBP2
DCP1A
ATAD2
SPNS1
CALM3
NOTCH2
TSNAXIP1
PPP5D1
RANBP10
PPRC1
SOD2
PAFAH2
GSPT1
POLR2J3
TMEM11
WTAP
WDR53
FBXO45
TMEM199
SEBOX
POLDIP2
NPRL2
HDGF
TMEM222
TMEM115
CYB561D2
SPATC1L
ARHGAP35
CALM1
AP2S1
GATB
FOXJ3
HEXA
CALR
CLPB
RASSF1
NDUFS7
OPA1
SSNA1
ANAPC2
RBL1
CCDC88A
TSN
DOHH
TOMM22
CALM2
SEC13
MRM3
LRP6
GLOD4
SLC39A1
CREB3L4
NMNAT1
LZIC
CYCS
TCF3
AURKAIP1
ZSCAN22
MRTO4
EMC1
SCGB1C2
SCGB1C1
ODF3
UNKL
ORMDL3
GSDMB
TIMM22
FAM180B
ZNF517
ZNF34
RPL8
COPS8
FZR1
KBTBD7
NDUFS3
KBTBD4
CCDC77
STX16
NUP214
TRIP4
PCLAF
NOP14
GRK4
KMT2D
SMN2
SMN1
GPBAR1
BTRC
TMEM262
CNOT1
C16orf91
PEMT
RHEBL1
MED23
TNFAIP8L2-SCNM1
TNFAIP8L2
CFAP410
B4GALNT3
CRTC2
KPNB1
ST3GAL2
POMZP3
TESK2
MMACHC
ZNF337
SCAF1
RRAS
SYMPK
FOXA3
CHMP4B
CTDP1
RPS3
IPO11
DIMT1
MTERF4
BOD1
MRPL24
ZNF513
IST1
SNX17
EIF2B4
WASHC2C
PNKD
TSSC4
PSMD3
PEX3
ADAT2
ZBTB45
PRCC
AHCYL2
UBE2B
CDKL3
RAD23A
RPS20
AAMP
ING3
PHIP
TSC1
GFI1B
TCEA2
HTRA2
DQX1
PA2G4
GTF2H3
EIF2B1
DEXI
CLEC16A
ADPGK
FRA10AC1
RPL36
MICOS13
HSD11B1L
ZFAND2A
ZNF212
WASHC2A
SMPD3
PEX26
ARHGEF12
NUF2
NAGPA
THRAP3
KCTD9
CDCA2
MAF1
CYC1
DYRK1B
UBE2T
PPP1R12B
PKM
ZMYND10
USP30
RPL22
RNF207
KBTBD6
RPL18A
RPS6KB2
ZNF789
ATP5MF-PTCD1
ATP5MF
PTPRCAP
KDM5A
NUDCD1
TTC13
ARV1
PERCC1
PARL
TRIAP1
COX6A1
OSCAR
NDUFA3
ZCCHC4
UBE2D3
VARS2
GTF2H4
ZKSCAN2
MED15
ZNF721
PIGG
FAM207A
NXF1
MCM7
AP4M1
SLC27A5
SCNM1
LYSMD1
RPS28
NDUFA7
ATG14
OAZ3
WDR97
TMEM127
CIAO1
USPL1
SLC9A1
MAD2L1BP
GTPBP2
KCTD5
TMOD4
INVS
ERP44
SCRIB
C8orf33
MRPL20
CCNL2
RPIA
PANK4
HES5
PTPN6
FAM53C
CDC25C
C12orf57
ZNF444
ZNF718
WDPCP
MDH1
FUS
GPAM
MAIP1
PPP1R12C
GABARAP
DNAJC11
RPS26
RNASEH2C
KAT5
DIP2A
KDM4B
DUS2
DPEP2NB
DDX28
C1orf159
FARSA
TRAPPC3
MAP7D1
TMTC3
CEP290
ZW10
CLDN25
TNFAIP1
IFT20
CCAR2
C8orf58
TMEM79
SMG5
MFN2
CYP51A1
MRPS16
DNAJC9
BRIX1
SLC35B4
MAPKAPK5
CLP1
ZNF595
MRPS15
ZNF384
RANGAP1
UBR2
ATXN2L
ALKBH3
MXD4
RBM42
SRSF11
ZC3H10
RPL41
INTS9
HMBOX1
CORO7-PAM16
CORO7
DNAJA3
ADNP
NME1
UBQLN1
LRRC29
RPS5
TBRG4
ZNF56
NUP153
PCID2
CUL4A
BANP
PEX14
RLF
PSMF1
WBP1
PGBD4
EMC7
C6orf47
APOM
VCP
FANCG
KAT7
CHD2
DFFA
COMMD1
PINX1
INO80B
BOD1L1
ABRAXAS2
MRI1
C19orf53
EEF1AKMT2
PSMD11
FBXW11
MRPS35
CCT4
SLC25A19
MTRNR2L1
UBE2Q1
CHRNB2
MANF
NMT1
DCAKD
TOR1AIP2
TOR1AIP1
UBQLN4
RAB25
LAMTOR2
NSFL1C
TAF5
HMGCL
GHITM
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
ZFYVE1
TRIP12
FBXO36
RBM15B
PBLD
HNRNPH3
GID4
ATPAF2
CCDC146
STK25
NOC4L
DDX51
SPRYD4
CLDN6
LRRC40
TMEM70
ELOC
DPP9
VPS37A
CNOT7
RIC8B
PRR5L
LUC7L
FAM234A
AP2M1
DCAF10
RPLP0
GCN1
SPATA25
NEURL2
CTSA
TTC33
DOLPP1
TMEM88
ENDOV
PHF23
DVL2
CIC
SPTLC1
TEPSIN
NDUFAF8
ZGPAT
ARFRP1
SP2
SLC33A1
SEPTIN9
ZNF420
CHCHD1
ZSWIM1
CDKN2C
PIGU
ZFYVE19
DNAJC17
AHCTF1
ACOX3
NTAN1
COMMD9
FBF1
UCHL5
RO60
TCF12
MRPL58
CSRNP2
EIF3F
SV2A
RPL29
SUPT5H
RPS16
RCL1
CRBN
RBM6
IDH3B
LETM1
CANT1
MTMR2
BIRC5
PYCR3
GFUS
DNAJB12
STAU1
SUFU
ACTR1A
EMILIN1
GDE1
CCP110
MFSD11
PHF12
LONP1
CATSPERD
MON1A
TFPT
PRPF31
HSP90AB1
ARF4
RALBP1
TRMT44
SUPV3L1
SNAPC3
SMARCAL1
SSBP1
PIK3R3
HSP90B1
DDX1
SART1
COQ9
CIAPIN1
ZSWIM8
NDUFV1
RPL12
LRSAM1
ZFPL1
CDCA5
UBL7
COG2
DDX49
COPE
TMA7
CCDC51
ATRIP
GTF2I
PHF13
RCOR1
P2RY11
SNRNP70
DNM1L
PKLR
FDPS
JOSD2
ASPDH
CTU1
ARHGAP9
ZNF749
TMEM242
TRAF7
DCAF8
MARS1
OST4
MTRNR2L2
MSH3
DHFR
RAB5C
MRPL39
SF3A3
PNRC1
TSC2
NTHL1
TMED9
B4GALT7
WASHC5
NSMCE2
SNX1
CIAO2A
MYBL2
DESI2
PRSS22
TOP3B
BOLA1
RPS7
DCAF1
ODF3L2
MADCAM1
U2AF1L5
U2AF1
RAB26
METTL9
CBWD5
WAPL
TMEM59
TCEANC2
FBXL12
CAND1
IP6K2
TNFRSF12A
THOC6
HCFC1R1
TRAK2
STRADB
CHCHD3
RWDD1
CBWD3
ZFYVE28
CD68
SOX6
C11orf58
PIK3IP1
B3GALNT2
ZFAT
CFAP99
NLK
TLE3
FBXO46
METTL25
CCDC59
VCPIP1
C8orf44-SGK3
PCNA
TMEM230
ESYT1
PTEN
KLLN
POLR2E
BICD2
TTC4
COX7C
PDE4DIP
ATF4
SLC7A6OS
PRMT7
GPX4
POLG
SLC24A1
PSMD2
MCU
METTL23
TEKT2
ADPRS
WDR87
SIPA1L3
SLC3A2
TRMT61B
FRG2
SRSF2
SKIV2L
NELFE
FAM228B
THYN1
ACAD8
ZNF500
DPY19L4
IPPK
BCKDK
PLEKHM3
BRF2
PRKACA
RPS19
USP48
NEK8
GUSB
TARBP2
MAP3K12
PIH1D1
ALDH16A1
SMIM13
RPLP1
SIRT2
NFKBIB
ZC3H3
SSR3
CAPN10
RCOR3
CMTR1
SLC4A2
CDK5
PSME3
BECN1
NPFF
FAM149B1
ECD
ZNF148
SRRD
HPS4
UBE3B
KCTD10
PSMD4
TIMM13
NDUFB5
MRPL47
STAT1
SLX1B
SLX1A
CCDC90B
BOLA2B
BOLA2
ASIC3
MUS81
CFL1
RUVBL1
NOLC1
GFM1
KAT8
COQ7
NOP53
TRUB1
MYLK4
VIRMA
ASXL1
TMEM217
TBC1D22B
SESN1
EIF4A1
TACO1
UBA52
PCBP2
COA6
ZER1
CTF1
BCL7C
H2BC14
H2AC14
CDKN2AIPNL
RFXANK
BORCS8-MEF2B
BORCS8
KDM4A
SRP68
FAF1
TMEM39A
POGLUT1
CFAP20
HAGH
FAHD1
COPS7A
BUB3
NDUFAB1
REXO1
LARS1
NDUFB10
EEF2
SHC1
KPTN
BMS1
KHK
CACTIN
WBP2
SF3B2
GAL3ST3
PARK7
HMX2
XRRA1
SPCS2
PPAN-P2RY11
PPAN
ANGPTL6
ACTRT3
ZACN
GALR2
PHAX
ALDH7A1
SPRED1
RPL3L
WNK1
RPL23A
TLCD1
PHB2
NDUFB8
HIF1AN
RAB34
CBWD6
BUB1B
USP15
RAB13
ZNF518A
YPEL4
WRNIP1
SULT1A4
SULT1A3
TMEM109
PRPF19
GTF2H2C_2
GTF2H2C
KMT2B
PTDSS2
ANO9
CWC25
GPANK1
CSNK2B
FBXO24
PI4K2A
MORN4
TSFM
EMP3
CCDC114
WDR25
WARS1
PALB2
DCTN5
ACSL3
SMIM12
RANBP2
SUMF1
MRPS11
MRPL46
LRCH4
TDG