ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX20230567 | Ishikawa
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◣ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

B4GALNT3
CLTC
CTNNB1
MTF2
LRP6
ATAD2
CALM3
PPP5D1
MRM3
GLOD4
CCNL1
KMT5B
CCDC88A
MRPL21
IGHMBP2
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
CALM1
LAMP1
BRWD1
SSNA1
ANAPC2
PHIP
TMEM41A
SOD2
WTAP
ZC3H6
RASEF
NOTCH2
STX18
TRIAP1
COX6A1
DDIT4
HEXIM2
PKM
NAGPA
SCGB1C2
SCGB1C1
ODF3
ADNP
UBE2B
CDKL3
ZFAND2A
LAT
SPNS1
IST1
EIF2D
KPNB1
TSN
ATG14
SEC13
PIK3IP1
NCBP2AS2
NCBP2
ZKSCAN2
TBL3
RPS2
RNF151
NOXO1
MCM7
AP4M1
MXD4
MRTO4
EMC1
NMNAT1
LZIC
PDE6D
COPS7B
GPAM
TMEM199
SEBOX
POLDIP2
HOXD9
HOXD8
TRIP12
FBXO36
RCL1
SLC44A2
DOLPP1
TOB2
MFN2
PNRC1
COPS8
MTERF4
CALM2
TIMM22
NXF1
PEPD
TMEM222
DIP2A
HMGCL
KCNIP2
UBQLN1
POMZP3
FOXJ3
UBE2D3
NOC4L
DDX51
RPS28
NDUFA7
ADPGK
ENDOV
WASHC2C
HEXA
MTMR2
RERE
GTF2H3
EIF2B1
TOMM22
MAPK11
PRTG
ZNF721
PIGG
CYP51A1
DSTYK
ZNF212
NUP214
SPRED1
KMT2D
RHEBL1
STX16
VPS37A
CNOT7
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
TCF3
TMA7
CCDC51
ATRIP
RPL22
RNF207
MAIP1
DCP1A
DOHH
FZR1
MRPL4
PSMD3
HAGH
FAHD1
UBC
WDR53
FBXO45
SUMF1
TSPYL2
WASHC5
NSMCE2
TBCB
POLR2I
OVOL3
MAPKAPK5
HSP90AB1
WASHC2A
ATXN2L
PINX1
POLR2J3
RCOR1
ACOX3
TRMT44
SPATC1L
TRMT61B
TAS1R1
NOL9
MYBL2
PRKACA
OAZ3
GTF3C5
PELP1
ARRB2
MRPS35
CORO7-PAM16
CORO7
DNAJA3
C8orf33
CCDC77
KDM5A
DDX23
PTEN
KLLN
PCID2
CUL4A
SMN2
SMN1
PBLD
HNRNPH3
CMTR1
SPATA25
NEURL2
CTSA
ZSWIM1
MRPL58
OPA1
PRSS22
SNRNP70
UBN1
GLYR1
RBM42
HOXD10
CYCS
ARHGEF12
GHITM
COQ7
WDR25
WARS1
IPO11
DIMT1
FRA10AC1
PEX3
ADAT2
PARL
DNAJC11
TAF5
USP30
PPT1
PACSIN3
ARFGAP2
CHCHD1
ZSWIM8
FUT11
FUS
SMPD4
MZT2B
TMEM79
SMG5
FAM180B
NDUFS3
KBTBD4
DUS2
DPEP2NB
DDX28
GCHFR
RMDN3
ACSL3
TMEM262
ZFPL1
CDCA5
MRPS15
CHD2
ARNTL
SARAF
SPTLC1
CASC3
UHMK1
NDUFS7
AJUBA
COMMD1
CCT4
COQ9
CIAPIN1
LONP1
CATSPERD
PHAX
ALDH7A1
ZSWIM7
TTC19
ATP8B1
TAGLN2
PPIL4
FAM207A
ARF4
RPS6KB2
PTPRCAP
HMGB1
USPL1
UBIAD1
CNP
TCF12
SRP68
ZACN
GALR2
NBPF1
PMPCA
ENTR1
TOP3B
CDKN2C
FAF1
ECSIT
CNN1
C16orf89
ALG1
CFAP410
SUPV3L1
USP42
GNB2
TMEM128
VCPKMT
CLCN7
TSR2
NSFL1C
ADK
MARCHF8
U2AF1L5
U2AF1
CKS2
SECISBP2
SLC9A1
RFXANK
BORCS8-MEF2B
BORCS8
LMTK2
TEKT2
ADPRS
MYLIP
AP5Z1
TPRN
TMEM203
NDOR1
MAML3
ULK2
VDAC2
HNRNPL
RLF
NABP1
CACTIN
TXN2
MRPL39
RPLP0
GCN1
HDAC10
TUBGCP6
TTC4
RUSC2
SRRD
HPS4
RANBP2
PARPBP
NUP37
GET3
DPP9
GRHL2
CALR
RAD23A
ZNF800
NDUFV1
TIMM50
TARBP2
MAP3K12
NPFF
C5orf51
TSR1
SGSM2
MOB3A
IZUMO4
MVD
TBRG4
DNAJB12
DYRK1B
OR6B2
NDUFA10
SMAGP
KDM4B
PIK3R3
YPEL2
CRBN
ZC3H3
MANF
RBM15B
ZNRD2
FAM89B
EHBP1L1
DCAF10
C6orf132
VPS33A
GOLGA1
ZFAT
PLEKHM3
KCTD9
CDCA2
SRSF11
LRRC40
MRPL37
CYB5RL
XPO4
FPGS
TBCCD1
DNAJB11
SRPRA
FAM204A
SLC25A1
SURF6
FBF1
EIF3F
TMEM217
TBC1D22B
NOP14
GRK4
PSTK
TIMM21
FBXO15
RCOR3
MED9
SMIM12
PSME3
BECN1
RPL6
PTPN11
KCTD5
IP6K2
MRPS11
MRPL46
MKNK2
REXO1
FAM76B
CEP57
PHF5A
ACO2
C4B_2
C4B
STK19
LOC110384692
DXO
C4A
SESN3
BRIX1
LRRC59
DDX1
NUP160
DBNDD2
TOB1
DDX50
SPRYD4
BRPF1
TENT5C
PCCB
MAN1A2
EXOSC3
SRSF6
ZNF326
TMEM88
KDM6B
UBOX5
FASTKD5
MEF2D
ABRAXAS2
EEF1AKMT2
LDHA
CTDP1
GABARAP
ELP5
CTDNEP1
GIPC1
CLDN7
SLC35B1
SLC38A2
NOL7
SPRYD3
TNKS
RPS5
DCAF1
FANCD2
TIMM44
OAZ1
MICU2
GARS1
RRP7A
BCKDK
KAT8
PI4K2A
MORN4
KLF5
DIP2B
TEPSIN
NDUFAF8
PPP1CA
RAD9A
GSTO2
RPUSD4
FAM118B
MRPL55
TSEN54
CASKIN2
LLGL2
NUP188
DOLK
PRRC2A
AIF1
RRBP1
TMEM184A
P2RY11
PPAN-P2RY11
PPAN
ANGPTL6
COL12A1
AVPI1
SLC7A6OS
PRMT7
FBXO28
TSR3
GNPTG
NCL
ATP6V0D1
AGRP
SMIM13
LAD1
H2AX
DPAGT1
HMBS
EIF2B5
ZWILCH
SNAPC5
RPL4
TAF15
CLDN4
DIABLO
DOK7
RTF2
LTO1
MCCC1
ATP6V1C1
DCAF8
MCU
DYNLL1
SPOUT1
SLC39A5
RNF41
NABP2
RASSF1
HTRA2
DQX1
TUSC2
HYAL2
TAF3
HPS5
GTF2H1
TFRC
ATG7
THOC1
COG2
TFDP2
TIGD6
HMGXB3
LRRC57
HAUS2
MRPS30
PALB2
DCTN5
NDUFAB1
TMED2
NDUFB8
HIF1AN
VAMP1
EIF4A2
THUMPD1
ZNF292
AMIGO3
GMPPB
AMOTL2
IDH3B
UMPS
EIF4A3
ANXA7
WDR43
AARS2
UBE3B
KCTD10
NUDT15
APTX
DNAJA1
LANCL2
KLHL12
TMSB10
FAM161B
COQ6
GABPB1
CDKN2AIPNL
KPTN
TAOK2
WDR18
GTF2B
ALKBH3
SFSWAP
UNK
H3-3B
MRPS7
MIF4GD
GGA3
LATS1
DPY19L4
DCPS
CDK5RAP1
MOB4
JMJD1C
ETNK1
EEF2
GRHL1
ELF2
EXOSC10
ATP6V0C
AMDHD2
RFX3
ZFAND4
KRT80
CNIH3
CCDC43
NME6
SDE2
ASAH1
ZBTB45
SLC27A5
FAM133B
UQCRC1
DDAH1
CCN1
ORMDL3
GSDMB
YEATS4
RNF141
SH3GL2
SRSF1
ZNF839
PDE4DIP
FBXL12
UBL5
PTPN4
RNF125
TEFM
WDHD1
SOCS4
TRIP4
PCLAF
ZNF517
ZNF34
RPL8
HGS
ARL16
TRAPPC2L
GALNS
CFAP43
METTL9
GXYLT1
MTHFD2
FREM2
PDCD4
POLR3D
MAEA
RHNO1
FOXM1
EXO5
ZNF789
ATP5MF-PTCD1
ATP5MF
PA2G4
ID2
WTIP
SLC25A26
PSPH
CCT6A
PACSIN2
SART1
ZNF358
MCOLN1
TMEM39A
POGLUT1
HAUS5
HERPUD1
SP2
TULP3
MON2
TSG101
MSTO1
RPLP1
FBXO24
LRCH4
POLG
FBXW2
PKN2
XPNPEP3
ST13
DNAJB7
TOP3A
SMCR8
CMTM7
DOK3
DDX41
ZER1
CCT2
MEF2A
VAC14
CLN8
MDM4
PSMF1
NLK
MRPL18
TCP1
PSMD6
TDRD9
ATP5MPL
UNC50
COA5
ZSCAN22
SETD1A
ORAI3
GTF2H2C_2
GTF2H2C
ZNF337
TARDBP
PPRC1
IL4I1
NUP62
ATF5
NOP56
FAM53C
CDC25C
IER5
PFDN2
NIT1
TMEM11
GNAL
CHMP1B
ELAC2
MRPS2
C9orf116
CENPBD1
ZNF148
SLC25A28
CLIC4
EIF1
ZGPAT
ARFRP1
ZC3H10
RPL41
ESYT1
HNRNPAB
DCP1B
NAA80
IFRD2
HYAL3
RPS3
BRAP
ACAD10
CIAO3
LNPK
RNF166
CTU2
GRAMD2B
ERI1
ERRFI1
POLR2M
DENR
ZNF384
FAM187A
EFTUD2
CCDC103
ZNF594
RANBP3
UBAP2
UBE2D2
NEK9
MKS1
LIPA
KLF10
H2BC21
H2AC21
H2AC20
STAM2
WDR61
TDRKH
GLRX3
MPHOSPH10
MCEE
C6orf226
RNASEH1
PHF23
DVL2
NOL10
IDI1
WDR37
FEM1C
EHD1
SCNN1A
LTBR
GTF2IRD2
GTF2IRD2B
SH3GLB2
MIGA2
RDH5
ITGA7
BLOC1S1
ERMARD
COQ10A
ANKRD52
PSMD12
ASH2L
ZNF718
ZNF595
PNP
PIP4P1
PLXNB2
ATXN7L2
CYB561D1
MED4
TSPO
MCAT
PSMD2
FAM156A
FAM156B
ATXN2
TBC1D30
GNS
ZW10
CLDN25
C19orf48
MFSD1
OSCAR
NDUFA3
ZSCAN25
C2orf69
EDF1
QTRT1
TMPO
TIGAR
SULT2B1
EXOSC8
ALG5
SIRT3
PSMD13
CDH1
GID4
ATPAF2
BLOC1S2
MTHFSD
PDCD6IP
TPP2
XPOT
RNF103-CHMP3
RMND5A
SMARCA5
TAF1B
SRSF5
KIF1B
REXO4
ADAMTS13
RPSA
TRIM65
MRPL38
CAAP1
ZFAND5
HBS1L
POLR2C
PTPN6
C12orf57
ATN1
ERCC6L2
KDM3B
NUP93
GTF2I
AURKAIP1
ITGB8
NOM1
NUDCD3
TXNDC15
PCYT1A
TRIM13
SLC24A1
GPN2
TOP2B
POR
TMEM104
NAT9
EPHB3
PDF
NIP7
COG8
ATP9B
INO80
STYXL1
MDH2
YIPF4
IARS1
BUD13
PAOX
ECHS1
SRF
CUL9
TTC9C
HNRNPUL2
SMIM41
ATG101
SENP5
SYCE2
TMEM242
PCNA
TMEM230
WDR4
SLC25A37
RAD54L2
ALDH3A2
KATNBL1
CZIB
CNBP
ABAT
CLPX
HMGCS1
SH3YL1
ACP1
GATAD2A
ACAD9
ZFP36
VCL
PLEKHG2
CNTNAP1
CCR10
ANXA2
PKP4
CCDC148
CBWD5
CBWD3
EXT1
RPS20
YWHAQ
SLC25A38
ASB6
GSTT4
CABIN1
RBSN
UFL1
PFKM
SENP1
GMFB
CPEB3
MARCHF5
MRRF
PCNX4
ARHGAP19
PPP1CC
PARK7
TMEM109
PRPF19
CANT1
MRPL40
HIRA
EXOC2
MIDEAS
PSMD8
ANKFY1
CBWD6
AGK
THAP4
ATG4B
SHBG
FXR2
EEF1E1
RPL18A
CEP350
ASNS
CCDC91
ADARB1
RBL1
COMMD2
MRTFA
WFDC3
DNTTIP1
PNRC2
C16orf95
SNRPD1
NDUFS6
MRPL36
CENPS-CORT
CENPS
YTHDF2
ELF1
WBP4
C16orf70
PGAP2
MTG1
YIPF6
ADCK1
GET4
RPL17-C18orf32
RPL17
C18orf32
SC5D
CCNC
SAR1B
TRPC4AP
EDRF1
MINPP1
EIF5
NFYC
WDR74
STX5
HAP1
CLDN6
TNFRSF12A
THOC6
HCFC1R1
NFKB2
UBE2S
NTMT1
C9orf50
LUC7L
FAM234A
NFATC4
SLC39A7
RXRB
RING1
HSD17B8
COL11A2
YIF1A